Sequence of DPV Turnip mosaic virus

Turnip mosaic virus isolate IND3 coat protein gene, partial cds.

ACC No: JQ246076

Dated: 2012-03-26 | Length: 867 | CRC: -494000364

                
ID   JQ246076; SV 1; linear; genomic RNA; STD; VRL; 867 BP.
XX
AC   JQ246076;
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DT   26-MAR-2012 (Rel. 112, Created)
DT   26-MAR-2012 (Rel. 112, Last updated, Version 1)
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DE   Turnip mosaic virus isolate IND3 coat protein gene, partial cds.
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KW   .
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OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-867
RA   Parmar N., Bhardwaj S.V., Thakur P.D., Handa A.;
RT   "Molecular characterization of Turnip mosaic potyvirus (TuMV) infecting
RT   radish (Raphanus sativus L.)";
RL   Unpublished.
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RN   [2]
RP   1-867
RA   Parmar N., Bhardwaj S.V., Thakur P.D., Handa A.;
RT   ;
RL   Submitted (06-DEC-2011) to the INSDC.
RL   Biotechnology, Dr Y S Parmar University of Horticulture and Forestry,
RL   Nauni, Solan, Himachal Pradesh 173 230, India
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FH   Key             Location/Qualifiers
FH
FT   source          1. .867
FT                   /organism="Turnip mosaic virus"
FT                   /host="Raphanus sativus L."
FT                   /isolate="IND3"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Ludhiana, Punjab"
FT                   /collected_by="Nehanjali Parmar"
FT                   /collection_date="2010"
FT                   /identified_by="Nehanjali Parmar"
FT                   /db_xref="taxon:12230"
FT   CDS             <1. .867
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="AFE55683.1"
FT                   /translation="AGETLDAGLTEEQKQAEKEKKERERSEKERERQRQLALKKGKNAA
FT                   QEEGERDNEVNAGTSGTFSVPRLKSLTSKMRVPKYEKRVALNLDHLILYTPEQTDLSNT
FT                   RSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWCIENGTSPNINGMWVMMDGDDQVE
FT                   FPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFD
FT                   FYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGPTVENTERHTTEDVNRNLTN
FT                   LLGVKGL"
XX
SQ   Sequence 867 BP; 285 A; 178 C; 226 G; 178 T; 0 other;

jq246076 Length: 867  26-MAR-2012  Type: N  Check: 6087  ..

       1  gcaggtgaga cgcttgatgc cggtttaaca gaagagcaga agcaggctga
      51  gaaggagaaa aaggagagag agagatcaga gaaagagcga gaaaggcaaa
     101  gacagctagc gcttaagaaa ggcaaaaacg cagcacaaga agaaggcgaa
     151  cgtgacaatg aagtaaacgc cggaacttcc ggaactttta gcgtgcctag
     201  actcaaaagt cttacaagca aaatgcgtgt gccgaagtat gagaaaagag
     251  ttgctctcaa cctcgatcat ttgatcttat acacgccgga gcagacagat
     301  ttatccaaca cgcgttcaac gcggaaacag tttgacactt ggtttgaagg
     351  cgtcatggct gactatgagc taacagagga taaaatgcaa ataattctca
     401  atggtttaat ggtctggtgc attgagaatg gaacctcccc gaatataaac
     451  ggaatgtggg tgatgatgga cggtgatgat caggtggaat tcccgatcaa
     501  gccgctcatt gaccacgcca aacccacatt taggcaaata atggcccatt
     551  tcagtgacgt agctgaagcg tacattgaaa agcgtaacca ggaccgacca
     601  tacatgccac gatatggtct tcagcgcaat ttaaccgaca tgagcttagc
     651  tcgttacgcg tttgatttct atgaaatgac ttctagaact ccaatacgtg
     701  cgagagaggc acacatccag atgaaagcag cagcactgcg tggcgcaaat
     751  aataatttgt tcggcttgga tggtaacgtc ggcccaacgg tagagaacac
     801  ggaaaggcat acgaccgaag acgttaatcg gaacctgact aacttacttg
     851  gcgttaaggg gttatga