Sequence of DPV Fig badnavirus 1

Fig badnavirus 1 isolate CA42 putative DNA-binding protein gene, complete cds; and polyprotein gene, partial cds.

ACC No: JQ282676

Dated: 2012-07-25 | Length: 1019 | CRC: 1649239932

                
ID   JQ282676; SV 1; linear; genomic DNA; STD; VRL; 1019 BP.
XX
AC   JQ282676;
XX
DT   01-APR-2012 (Rel. 112, Created)
DT   25-JUL-2012 (Rel. 113, Last updated, Version 2)
XX
DE   Fig badnavirus 1 isolate CA42 putative DNA-binding protein gene, complete
DE   cds; and polyprotein gene, partial cds.
XX
KW   .
XX
OS   Fig badnavirus 1
OC   Viruses; Retro-transcribing viruses; Caulimoviridae; Badnavirus.
XX
RN   [1]
RP   1-1019
RA   Laney A.G., Hassan M., Tzanetakis I.E.;
RT   "An integrated badnavirus is prevalent in fig germplasm";
RL   Phytopathology 0:0-0(2012).
XX
RN   [2]
RP   1-1019
RA   Laney A.G., Hassan M., Tzanetakis I.E.;
RT   ;
RL   Submitted (13-DEC-2011) to the INSDC.
RL   Plant Pathology, University of Arkansas, 495 N Campus Dr PTSC 217,
RL   Fayetteville, AR 72703, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1019
FT                   /organism="Fig badnavirus 1"
FT                   /host="Ficus carica Sequoia"
FT                   /isolate="CA42"
FT                   /mol_type="genomic DNA"
FT                   /country="USA:California"
FT                   /collection_date="Nov-2011"
FT                   /db_xref="taxon:1034096"
FT   CDS             25. .432
FT                   /codon_start=1
FT                   /product="putative DNA-binding protein"
FT                   /note="P2"
FT                   /db_xref="UniProtKB/TrEMBL:G8G8W2"
FT                   /protein_id="AFF58912.1"
FT                   /translation="MSSYIVSQGTNSYKEAIKATEGIESPAAGFVRPADFQGGTSAARV
FT                   QIKQNNTLIQLLIQIAESLKDIREEQRVLKEEVRQLQKDKAASITEELVERLQSLSLGV
FT                   PEKKVAEKKGTFRVFKDPLRILEEEKEKLPK"
FT   CDS             429. .>1019
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="P3"
FT                   /db_xref="UniProtKB/TrEMBL:H9NHI9"
FT                   /protein_id="AFF58913.1"
FT                   /translation="MNRSRTVTQQLPAVSTRRREEINRDQPLFEDQIRDYRRNQRRRFV
FT                   AEQAVRRTMGRMRGRRYNQTLEQIVDPEVELNQSMQERANLVPAEVLYRSRRDNINHQV
FT                   YNHRSEEAMLCVGEQQDRMFIQPNSFQELQRSGMQFIHLGVLQVRLQILHRADEGTMAL
FT                   VVFRDNRWQGDQSIFAISEIDLTRGSQIVYVIPD"
XX
SQ   Sequence 1019 BP; 349 A; 204 C; 267 G; 199 T; 0 other;

jq282676 Length: 1019  25-JUL-2012  Type: N  Check: 5278  ..

       1  gaaagttgaa agttggacct cttcatgagt agttatattg tctcccaagg
      51  gacaaatagc tacaaggagg ccataaaagc tactgaagga atagaatccc
     101  cagcagcagg gttcgtgaga ccagccgact tccagggagg aacatcggca
     151  gcgagggttc agattaagca gaataatacc cttattcagc ttctaatcca
     201  gatcgctgag tccctgaagg acatccgaga agagcagcga gtcctaaagg
     251  aggaggttag gcaactgcag aaggacaaag cagcttcaat cacagaagag
     301  cttgtggaaa gacttcaaag tctctcgtta ggagtcccag aaaagaaggt
     351  agctgagaag aaaggaactt ttagggtatt caaagaccct ttaagaatcc
     401  ttgaagagga aaaagaaaag ctgccaaaat gaacaggtcg agaacggtga
     451  ctcagcagct gccagctgtg agtaccagac ggagggaaga aattaacagg
     501  gatcaacctc tgttcgagga tcagatccgt gactaccgga ggaatcaaag
     551  gcgaaggttt gtagctgaac aagccgtaag acgaaccatg ggaagaatgc
     601  gaggacgacg atacaaccaa actctggagc agatcgtaga tccagaggta
     651  gagctgaacc aatctatgca ggaaagagcg aacctagtac ctgcagaagt
     701  tctgtaccgc tcaagaagag acaacataaa ccatcaggtc tataatcata
     751  gatccgagga agcgatgctt tgtgtaggag aacagcaaga caggatgttt
     801  atccaaccta acagcttcca agaactacag aggagtggta tgcagttcat
     851  acatctggga gttttgcaag taagactcca gatactgcat agggcagatg
     901  aaggaacaat ggccttggta gtcttcagag ataaccgatg gcaaggagat
     951  cagtcaatct tcgcaatctc agaaattgac ttgactagag gatcgcaaat
    1001  agtatacgtg atacctgac