Sequence of DPV Gooseberry vein banding associated virus
Gooseberry vein banding virus isolate RC HC, complete genome.
ACC No: JQ316114
Dated: 2012-07-03 | Length: 7659 | CRC: 144747217
ID JQ316114; SV 1; circular; genomic DNA; STD; VRL; 7659 BP.
XX
AC JQ316114;
XX
DT 03-JUL-2012 (Rel. 113, Created)
DT 03-JUL-2012 (Rel. 113, Last updated, Version 1)
XX
DE Gooseberry vein banding virus isolate RC HC, complete genome.
XX
KW .
XX
OS Gooseberry vein banding virus
OC Viruses; Retro-transcribing viruses; Caulimoviridae; Badnavirus.
XX
RN [1]
RP 1-7659
RX PUBMED; 22720701.
RA Petrzik K., Pribylova J., Spak J.;
RT "Molecular analysis of gooseberry vein banding associated virus";
RL Acta Virol. 56(2):119-124(2012).
XX
RN [2]
RP 1-7659
RA Petrzik K., Pribylova J.;
RT ;
RL Submitted (22-DEC-2011) to the INSDC.
RL Department of Plant Virology, Biology Centre AS CR, v.v.i., Institute of
RL Plant Molecular Biology, Branisovska 31, Ceske Budejovice 370 05, Czech
RL Republic
XX
FH Key Location/Qualifiers
FH
FT source 1. .7659
FT /organism="Gooseberry vein banding virus"
FT /host="Ribes rubrum cv. Holandsky cerveny"
FT /isolate="RC HC"
FT /mol_type="genomic DNA"
FT /country="Czech Republic"
FT /collection_date="2011"
FT /db_xref="taxon:157270"
FT CDS 393. .1067
FT /codon_start=1
FT /product="hypothetical protein"
FT /note="ORF 1"
FT /protein_id="AFM84637.1"
FT /translation="MRKHTALEFEEKAEAWERTERAARHDFVFRNLKTYPRYDTNQRFP
FT SCEIPCYHYNTGAGTKVCHATISKEGGNQHFVLNSLFDLEVTQIHNQAVIHDCLTQFIQ
FT YSIYKRRKKLRKSRLPTIPEERPLATSEVLKVDPEQISQISSQLTAVKADLREIKSQQS
FT QLKTGFNQLRDSIQELLSRESEPKPIEAATAEVADQLKKQLKEVKAVLEDTKKIVRSLT
FT PE"
FT CDS 1068. .1511
FT /codon_start=1
FT /product="hypothetical protein"
FT /note="ORF 2"
FT /protein_id="AFM84638.1"
FT /translation="MSSWEDTSSKQIYKDALTATNTLYTNGIGEGFVKPAELTGGQVTV
FT KAIRQNNTLIELVVGISAKLDNAAAQLRSLDRRISELETAIQAKEAVSLPESIVDDLTK
FT EFAKLDAGTGRKAPKIGKKGKFFVWKDPKNDDQNPNRASTSRN"
FT CDS 1468. .7200
FT /codon_start=1
FT /product="polyprotein"
FT /note="ORF 3; contains movement protein, capsid protein,
FT aspartic protease, RTase, RNase H"
FT /protein_id="AFM84639.1"
FT /translation="MTTRTRTEQVPRATSTRPSSRGEASSTLDDQIRGYRQTARLRHNV
FT RRRLRSLSPGGFRNTLEQQLSPNQELALSRRRRANLVPAEVLYTHNNNEVVNRVYQHYE
FT ERSAHVVDRQMDLRFIEEESYRRLVDEGLQFIHLGMGMVRIHMLHRNSAGIEAMIVFRD
FT TRWTDDRQVIASMSVDMTHGSQLVYVIPDAMLSIHDFYNHIQVSIQTRGYNGGWTGGDS
FT NMIVTRSLIGRLTNQSTTNFGYQIQGVTDYLTSHGVSCIPGEQWSVTNRSGEWRLQQSS
FT IAPPEQVPTEARLRPGPRGEISMRFTNFRDQAVRERALDEDTDSGRPETSGRDETTPYV
FT GALRFDFKGRSKPREEECFEVAAPDVLQSWMQQLSRSPPRQNRYQGPEWDTLGEPSGKY
FT DYKVRYSAPPPTPWPNKPTGWGDEEEDLPPPRFDSLSESFSGGGEIEPLEYHESSEDSY
FT EEVRRRDMENHNNLIAEGFTQEPRFPGLYAPARIEVIEEDHYEGDASEQSRSEEEPEFD
FT YPQIAAVVNQNNEPELEYPTKKFQELMAKIKGFQNQKVEIAAMNAESSGSGVTSGNFVP
FT PIATTGPSVYPPATGTHGTNIGPQDQGGWGGRMPRSRMPGGYGRPQRPWTLPSAQTENG
FT VMLIIPEDLTLAADAINRWESITINVVSKLAFDNMQDKVDYVENLLGEREKEVWTTWRM
FT KWEDEYRRMVAISDDTRNLTAAIKRVFGVHDPFTGSTFLQNQAYADLERLSCKRMEDVM
FT PFLFTYYQLAAKSGRMWTNEELSDKLFRKLPEAVGPTIEKAYKERYPGLVIGVMARINF
FT IIEYLQNVCKQAALQRSLKNLNFCRTMPVPGYYEKKKYGVRKSTTYKGKPHDTHVKVIK
FT NKDKNAPGRKCKCYLCGIEGHYARECPKKTVQPQRMAYFEGLALADNWDVLSVDVGESD
FT SEGVCSISEGETAGRMDELAAFKTQLPYPVEFEQGMFVLTIEHVTAPAVASGWRRRTEL
FT RGDQKVCPHQWSDVAEVSLEDRFCSLCGDNTPVGRRVHCTTCKANLCPVCAWLEFGIRI
FT VAAKTDATKWNYLNKDELIAQLYEHNAFLTHQNKALQGRIEELTKGRNNDLIDLCEGDP
FT DLMAEICDELFRKPASGETSILRGKERVKLEILEEEVRGYKEEQELRTPLQKLSEGAST
FT SYKAPEESDEERVGALLAEGELEKLAAVAGESYSRMPKGGLNKLYHLNVQFVIPKAEGG
FT HVSFTVAAIIDTGCTCCCINGAKVPEEAQEEASYAMTFAGVNSRGTTRKKMRAGKMVIS
FT GNDFYTPYISVFDMDLPDIDMLIGCNFIKAMQGGIRFEGTEVTIYKKVTTIQTTLEPIK
FT LGYAEFDPDIQVELERAYYAAPVSEAELIKLRDHRLLAELKEQGFIGNDPMLHWAKNQV
FT KCKLDIINPDITIQGKPPSTATPEIKDRYQRHIDALLSIGVIRPSKSRHRTAAFITYSG
FT TSVDPKTGEEIRGKERMVFDYRALNNNTHKDQYTLPGINSIVAAVGNAKIYSKFDLKAG
FT FHQVLMEESSIPWTAFITPVGFYEWLVMPFGIANAPAVFQRKMDNCFHKLREFVAVYID
FT DILVFSNSLQEHESHLRQMLEVCRKNGLVLSPTKMKVAVTTVEFLGAIIGNGKIKLQPH
FT IVKKISEVDDESLRTLKGLRSWLGIINYARNYIPNCGTLLGPLYSKTSENGDRRMSPQD
FT WKLVRKVKELVKSLPDLELPPAGAYVVIETDGCMEGWGGVCKWKHKKGESASAEKVCAY
FT ASGKFPAIKSTIDAEMHGVMNSLEKFQIYFMDKGEVTIRTDCQAIVAFYEKLNANKPSR
FT VRWLNFCDYITNTGVKVVFEHIKGKDNVLADTLSRLTQTLAAVREMPAEQEEILRQALN
FT NTEVQPKERRILMDHICGMLEAQAQKASLHQHGLSP"
XX
SQ Sequence 7659 BP; 2283 A; 1832 C; 2008 G; 1536 T; 0 other;
jq316114 Length: 7659 03-JUL-2012 Type: N Check: 4226 ..
1 tggtatcaga gcttcggctc tacgttagtc tacatggcta gtttctaatt
51 tacctgtgag gttgtgccat aaagcctaac ccgaggttca aacccagctg
101 atcgtcagac cttcggtctg aggttgtagt gttttccgac gattgtcata
151 gtccgaactc cggaaaagct ttctccttac ggtatcataa ggaggttgct
201 gtttgaaacg ttaggagttg cagagttgca aaaggatcag gcagcccgag
251 agccgttagc cgtgggaggc gccgaggcga atagtggtgt ccctgatatg
301 agcaaggtga gcaacgagaa acgagtatct agagcagtag ccaacaccgg
351 ccggagaata gtaaagtaac gactcaagac gtgacagtct atatgcggaa
401 acacacagcc ttagaatttg aagagaaggc tgaagcttgg gagagaactg
451 aaagggcggc gaggcacgac ttcgttttta gaaacttgaa gacttacccc
501 cggtacgata ccaaccagag gtttcccagt tgcgagatcc cttgttatca
551 ctacaatact ggcgcgggaa cgaaagtttg ccacgcaaca atctccaaag
601 aaggcggaaa ccagcacttt gtgcttaaca gtctgtttga cttagaagtc
651 actcagattc ataaccaagc agtcatccac gactgtttga cccagtttat
701 acagtactcc atctacaaga gaaggaagaa actcaggaag agtagacttc
751 caacgatccc ggaggagcgg cctttggcta cctctgaggt cttgaaggta
801 gatccggagc agatctccca gatctcatca cagctcaccg ctgtgaaggc
851 agatctccga gagatcaaga gtcagcaatc ccagctcaag acgggattca
901 accagctgag agattccatc caggaattac tctccagaga atcggaaccc
951 aaaccgattg aagcagccac agctgaggtg gccgatcagc tcaagaagca
1001 gcttaaggaa gttaaggctg tgcttgagga caccaagaag atcgtcagat
1051 ctttgacccc ggagtagatg agcagctggg aagacacttc cagtaagcag
1101 atctacaagg acgcgttaac cgcaacaaac acgctctaca ccaacggcat
1151 cggcgaaggg ttcgtcaagc cagcagagct aacagggggt caggtcaccg
1201 taaaggcgat ccgacagaac aacacgctca tcgagctagt tgttgggata
1251 agtgcgaagc tagataacgc tgccgcacaa ctaagaagcc tcgacaggag
1301 gatatcggag ctcgaaacag ccatccaggc aaaggaggct gtatccttac
1351 cggagagtat agtcgacgac ctcaccaagg agttcgccaa actagacgcc
1401 ggaacaggaa ggaaggctcc taagatcggg aagaaaggca agttcttcgt
1451 gtggaaagac ccgaagaatg acgaccagaa cccgaacaga gcaagtacct
1501 cgcgcaacta gcacccgacc cagtagtcgc ggtgaggcgt cgtcaaccct
1551 agacgaccag atacgagggt acagacagac cgccagacta agacacaatg
1601 tcaggcgaag actaaggagt ttatctcctg gtgggttcag gaacacgcta
1651 gagcagcagc ttagccctaa tcaagagcta gcactaagta gaaggagacg
1701 agcgaacctc gtgccagcag aagtgctcta cacccacaac aacaatgagg
1751 tagtcaatag agtctaccag cactacgagg agcgaagcgc gcacgtagtg
1801 gacagacaga tggaccttcg gttcatcgag gaggagtcct atcgcaggct
1851 agtcgatgag ggcttacagt tcattcacct tggcatgggg atggtaagga
1901 tccacatgtt acacagaaac tcggccggga ttgaggccat gatagtcttc
1951 agagacacaa ggtggaccga cgacaggcag gtgatagcca gcatgtccgt
2001 cgatatgaca cacggatcac agttggtata tgtgattccg gatgcgatgc
2051 tctccatcca tgatttctac aatcacatcc aggtcagcat acagaccagg
2101 ggatacaacg gaggatggac gggtggtgac tctaacatga tagtcaccag
2151 gtcactgatt ggtaggttaa ccaaccagag cacgaccaac tttggttacc
2201 aaatacaagg agtcacggac tacctcacaa gccatggagt ctcttgcatt
2251 ccaggagaac aatggagtgt aaccaacaga tcaggagagt ggcgattaca
2301 gcaatcatcc attgcgccac cggagcaggt ccctacggag gctaggctaa
2351 ggccaggacc tagaggtgaa atcagcatga ggttcacgaa cttccgagac
2401 caggcggttc gggagagagc gttggacgaa gataccgaca gtggtagacc
2451 agaaacaagt gggcgagatg aaacaacgcc ctatgttggt gcgctgagat
2501 tcgatttcaa aggcaggtca aaaccacgag aagaggagtg cttcgaagta
2551 gcagctccag acgtgcttca aagctggatg caacagctat ccagaagtcc
2601 accaaggcag aatcgctacc aaggccctga atgggatacg ctaggcgagc
2651 caagtggcaa gtatgactac aaggtcaggt actcagcacc accaccaaca
2701 ccgtggccaa ataagccaac tggttggggg gatgaagaag aggatcttcc
2751 accaccaaga tttgactcat tgtcagaatc tttttcgggg gggggggaga
2801 tagaaccttt ggagtaccac gaaagcagcg aagacagcta tgaagaggtc
2851 agaaggcgtg atatggaaaa tcacaacaac ctcatagcag agggattcac
2901 ccaggaacct aggttcccag gcttatacgc gccagccagg atagaagtga
2951 tcgaggaaga tcactatgaa ggtgacgcta gtgagcaaag tcggtctgag
3001 gaggagccgg aattcgacta tccccagata gcagcagtgg tgaaccaaaa
3051 caacgaaccc gaactggaat atccgacaaa aaaattccag gagcttatgg
3101 ctaaaatcaa agggttccag aaccagaagg tggagattgc cgccatgaac
3151 gctgagtctt cgggatcagg cgtaacatcg ggcaactttg tgccaccaat
3201 agcaaccact ggtccatcag tatacccgcc agctacggga acacatggca
3251 ctaacatcgg gccacaggac caaggaggtt ggggagggcg tatgcccagg
3301 agtagaatgc caggagggta tggtaggcct cagaggccat ggaccttgcc
3351 ttcagcgcag accgagaacg gcgtcatgct aatcattccg gaggatttaa
3401 ccctcgcagc agatgctatc aacagatggg agtcaatcac catcaacgtc
3451 gtcagcaaac ttgccttcga caacatgcag gacaaagtcg actacgtcga
3501 aaacctgctg ggtgaacgtg aaaaggaagt ttggaccact tggagaatga
3551 agtgggaaga cgagtaccgg cggatggttg ccatttcaga tgacaccaga
3601 aatctgaccg ccgcaatcaa aagggtgttt ggggtacatg acccattcac
3651 aggaagtacc ttcctacaaa accaggccta tgcggacttg gagaggttaa
3701 gctgcaaaag aatggaggac gtgatgccat tcctattcac gtactatcag
3751 ctggcagcaa aatccggtag gatgtggaca aacgaagagc tctccgataa
3801 actgtttcgg aagctaccag aggcagtagg ccccacaata gagaaagcct
3851 acaaagagcg ctacccaggg ttagtaatcg gggtaatggc tcggatcaac
3901 ttcataatcg agtacctgca gaacgtgtgc aaacaagcag cgttacagcg
3951 gagtttgaag aatctcaact tctgccgaac aatgccagtg ccagggtact
4001 acgagaagaa gaagtatgga gtgcgcaagt ccacaacata caaaggtaaa
4051 ccacatgaca ctcatgtgaa ggttatcaag aacaaggaca agaacgcacc
4101 agggcgcaag tgtaaatgct acctttgcgg catagaaggc cattacgcaa
4151 gggaatgccc taagaagacg gtacagccac aaaggatggc gtacttcgaa
4201 ggtctcgctc tcgcggataa ttgggatgtt ctttctgtag acgtcgggga
4251 aagcgacagc gaaggagtct gctccatttc tgaaggagag acagcaggca
4301 ggatggatga gctagcagcg ttcaaaacac agctccccta ccctgtagag
4351 ttcgaacagg gcatgttcgt tctcaccatt gagcacgtca ccgctcctgc
4401 agtagcctca ggatggcgca ggcgtacaga gctacgaggt gaccagaagg
4451 tgtgtccgca ccaatggagt gacgtcgccg aggtgtcact agaggacaga
4501 ttctgttctc tctgcggaga caatacgcca gtcggcagaa gggtacattg
4551 cacgacatgt aaggcaaacc tgtgcccagt ttgcgcttgg ttggagtttg
4601 gcatcagaat tgtagcagcc aaaactgacg ccaccaagtg gaactacctg
4651 aataaggatg agttgatcgc tcagctgtac gagcacaacg cattcctcac
4701 tcaccagaac aaagctctgc aaggtagaat tgaggagtta acaaaaggcc
4751 gaaacaatga tctcatcgat ctttgtgaag gtgatccaga cctcatggca
4801 gagatttgcg acgagctttt ccgcaagcca gctagcggag aaacctcgat
4851 tttgcggggg aaggagaggg taaaactcga aatcctggaa gaagaagtcc
4901 gaggatacaa agaagagcaa gagctcagga cccccctaca aaaactttct
4951 gagggtgcat caacatctta caaggcacca gaagaaagcg atgaagaaag
5001 agtcggagca ctcttagctg aaggagaatt agagaaactc gctgccgttg
5051 caggagaatc ctattctcgc atgcctaaag gtggcctaaa caagctgtat
5101 cacttaaatg tgcagtttgt catccccaaa gctgagggtg gtcacgttag
5151 cttcacagtc gcggccataa ttgatacagg gtgcacctgt tgctgtataa
5201 acggcgcgaa agttccagaa gaagctcaag aggaagcctc atatgcaatg
5251 acgttcgcgg gcgtcaactc gagaggcaca acaagaaaga agatgagggc
5301 gggaaaaatg gtcatcagtg ggaatgattt ctacaccccc tacatctcag
5351 tctttgacat ggacctccca gacattgata tgctgatagg atgtaacttc
5401 atcaaagcca tgcaaggagg gatcaggttc gaaggcactg aagtcaccat
5451 ctacaagaag gtgaccacaa tccagacgac tctggagcct atcaaattgg
5501 gctatgcaga gttcgaccct gacatccagg tggagcttga aagggcttac
5551 tatgccgctc cagtgtcaga agcggagctg ataaagctca gggatcacag
5601 gctgctcgct gaattaaaag agcaaggctt cataggcaac gacccaatgt
5651 tgcactgggc aaagaaccag gtcaagtgca agcttgacat tatcaacccg
5701 gatatcacca tccagggcaa gccgcctagc acagccacac ctgagatcaa
5751 agaccgctac cagcgtcaca tagatgcact gctatccatt ggggtcatcc
5801 gaccaagcaa aagcaggcac cgaacagcgg cattcatcac ctattcgggc
5851 actagcgtgg acccgaagac tggggaagaa atcagaggca aagaaaggat
5901 ggtcttcgac tatcgcgctc tgaacaacaa cacgcacaag gaccagtaca
5951 cattgcctgg catcaactcg atcgtagcag ctgttggcaa cgccaaaatc
6001 tacagcaaat tcgacttgaa ggctggtttc caccaggtcc taatggaaga
6051 atcctctatc ccttggacag cgttcatcac gcccgtagga ttctatgaat
6101 ggttggtaat gcctttcggt attgctaacg ctccagcggt tttccagagg
6151 aaaatggata actgcttcca caagctgaga gagttcgtcg cggtttatat
6201 cgacgacatc ctcgtcttca gcaattccct gcaagaacat gagagccatt
6251 tacggcaaat gctggaagtt tgcaggaaga atgggttggt gctgtcacca
6301 acaaaaatga aggttgctgt cacaacagta gaattcctag gggccatcat
6351 cggcaatggg aaaatcaagt tgcagcctca catcgtcaag aagatttctg
6401 aagttgacga tgaatccctc agaaccctca aagggttaag aagctggttg
6451 ggcataatca actatgccag gaattacatt cctaactgtg gaactttgct
6501 tggtccactt tacagcaaaa ctagcgaaaa tggggatcga agaatgagtc
6551 ctcaggactg gaagctggtc aggaaggtca aagagctcgt caagagtctg
6601 ccagacttag agctaccacc agcaggagcc tatgtggtca tcgaaacaga
6651 cggctgcatg gaaggatggg gaggagtgtg caaatggaag cacaagaaag
6701 gagaatctgc ctcagcagag aaagtctgcg catatgcaag tggcaaattc
6751 ccggctatca aatccaccat cgatgctgag atgcatggag taatgaactc
6801 cctggaaaaa ttccagatct acttcatgga caaaggtgag gtcaccatca
6851 gaacagactg ccaggccata gtagcgttct acgaaaagct caacgctaat
6901 aaaccttcga gggttcgctg gcttaacttc tgtgactaca tcaccaatac
6951 aggagtcaag gtcgtcttcg agcacatcaa agggaaggac aacgtcctag
7001 cagacacgct cagccgactc acacagacct tagctgcggt tcgggagatg
7051 cccgcagaac aggaagagat cctcagacag gctctcaaca atactgaggt
7101 ccagcccaag gaacgaagga tcctcatgga tcacatctgt ggaatgctgg
7151 aagcccaggc ccaaaaggcc agtctccacc aacatgggct tagcccatga
7201 tctatctgat aatggaagct gacgcaccgg atgacttcac cataaatgat
7251 tcgtcatcgc ttacgccatc agctctatta ttgctttact tttgtaagtg
7301 cgcctgtagt gcgctgagtc agggaatctt atcccttatg tcctttagcc
7351 acactttcgg tggtagtgga tgcttttagt acaagcatta ttgtaaaagc
7401 taagcttttg agctgtcgat ggggcccaat gagcacccga gcttcaaaac
7451 cttatcttct actccctata tatggagtct taggtagaag gagcaaggca
7501 tcgaatagct ttcatcgaat gtctttccct tccttgtaag cattattcct
7551 caataaacaa atcttccgca atactctgtt tcctttcttt agttctttac
7601 tgttacctag ccagtcagta gagaagatcc aggaaaattt tatttttccg
7651 ggaccattt