Sequence of DPV Potato leafroll virus
Potato leafroll virus isolate JokerMV10, complete genome.
ACC No: JQ346191
Dated: 2012-05-10 | Length: 5865 | CRC: -1448677190
ID JQ346191; SV 1; linear; genomic RNA; STD; VRL; 5865 BP.
XX
AC JQ346191;
XX
DT 10-MAY-2012 (Rel. 112, Created)
DT 10-MAY-2012 (Rel. 112, Last updated, Version 1)
XX
DE Potato leafroll virus isolate JokerMV10, complete genome.
XX
KW .
XX
OS Potato leafroll virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
XX
RN [1]
RP 1-5865
RA Huehnlein A., Schubert J., Thieme T., Zahn V., Steinbach P.;
RT "Variants of PLRV with reduced symptome severity under field conditions";
RL Unpublished.
XX
RN [2]
RP 1-5865
RA Huehnlein A., Schubert J., Thieme T., Zahn V., Steinbach P.;
RT ;
RL Submitted (03-JAN-2012) to the INSDC.
RL Institute for Biosafety in Plant Biotechnology, Julius Kuehn Institute,
RL Erwin-Baur-Str. 27, Quedlinburg 06448, Germany
XX
CC ##Assembly-Data-START##
CC Assembly Method :: Lasergene v. 8.0
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1. .5865
FT /organism="Potato leafroll virus"
FT /host="Solanum tuberosum L."
FT /isolate="JokerMV10"
FT /mol_type="genomic RNA"
FT /country="Germany"
FT /collection_date="10-Sep-2010"
FT /db_xref="taxon:12045"
FT 5'UTR 1. .53
FT gene 54. .797
FT /gene="P0"
FT CDS 54. .797
FT /codon_start=1
FT /gene="P0"
FT /product="ORF0"
FT /protein_id="AFI93511.1"
FT /translation="MIVLTQSGTLLFDQRFKLSKFLFVVIATGFPLLLQQASLLYGYNH
FT EQIYRICRSFLYVLPLLNCKRGRISTSGLQLPRHLHYECLEWGLLCGTHPAIQIVGPSI
FT IVELDNPTTAAAYRSELLRISSSSYVKNSVGFSNGWGHDMEAFVRNAICLLELRERSIP
FT QSGLRNLMGNYQHLVRSLLDACTVDYFVPLDFQHRSLMLNFARLYNQLDLQGRAKSFRA
FT LTGFPVYVPSEDYLEGSFLQKELQE"
FT gene 187. .2106
FT /gene="P1"
FT CDS 187. .2106
FT /codon_start=1
FT /gene="P1"
FT /product="polyprotein"
FT /protein_id="AFI93512.1"
FT /translation="MNRFTAFAALFFMFSLCSTAKEAGFQHPAFNFRGTSIMSVSSGDY
FT SAAPTPQYKSWALPSLSNSTTPPPLLLTDRSYYELVQALMSKIRLDFQMVGDMTWRHLS
FT EMLFASWNSVREVSLRAASVTLWAIISIWFGLYWTLARLITLFLWTFSIEALCLILLGC
FT ITSLIYKGALSLSEHLPVFLFMSPLKIIWRAAFSKRNYKNERAVEGYKGFSVPQKPPKS
FT AVIELQHENGSHLGYANCIRLYSGENAWVTAEHCLEGAFATSLKTGNRIPMSTFFPIFK
FT STRNDISILVGPPNWEGLLSVKGAHFITADKIGKGPASFYTLEKGEWMCHSATIDGAHH
FT QFVSVLCNTGPGYSGTGFWSSKNLLGVLKGFPLEEECNYNVMSVIPSIPGITSPNYVFE
FT STAVKGRVFSDEAVKELEREASEAVKKLARFKSLTGKNWADDYDSDEDYGLEREAATNA
FT PAEKTAQTNSAEKTAPSTSAEKTAPTNKPLNGQAAPSAKTNGNSDIPDAATSAPPMDKM
FT VEQIITAMVGRINLSEIEEKIVSRVSQKALQKPKQKKRGRRGGKNKHNSSPPTSTQSTS
FT GAPKKEAAPQASGSAGTSRATTTPAPEAKPSGGKNSAKFIPSWRRKQQDSAGQKPDLKL
FT NSKA"
FT gene 1511. .1651
FT /gene="Rap1"
FT CDS 1511. .1651
FT /codon_start=1
FT /gene="Rap1"
FT /product="replication associated protein"
FT /protein_id="AFI93513.1"
FT /translation="MTPMRITVWRERLQQMRPQRKLLKQTQQRRLLHQLQQRKLLQQTS
FT L"
FT gene <1524. .3374
FT /gene="P2"
FT CDS <1524. .3374
FT /codon_start=1
FT /gene="P2"
FT /product="putative RNA polymerase"
FT /note="translated by ribosomal frameshift"
FT /protein_id="AFI93514.1"
FT /translation="GLRSGERGCNKCARRENCSNKLSREDCSINFSRENCSNKQAFKWA
FT SGTVRQNKRQLRHPRRRYKRTTNGQNGRTDHHSYGGENQSLGDRGEDSEQGVSESPAEA
FT QTKEARKAWREEQAQQFTSYFNAIYKWGAQEGGCPPGFRKCGHIPCYYHPRTRGETQWG
FT QKLCQVHPELAEKTAGFGWPKAGSEAELQSLNLQAARWLQRAESATIPGAEARKRVIEK
FT TVEAYRNCITNAPLCSLKSKLDWAGFQQDIREAVQSLELDAGVGIPYIAYGLPTHRGWV
FT EDHKLLPVLTQLTFDRLQKMSEASFEDMSAEELVQEGLCDPIRLFVKGEPHKQSKLDEG
FT RYRLIMSVSLVDQLVARVLFQNQNKREISLWRSVPSKPGFGLSTDTQIAEFLECLQKVS
FT GAPSVEELCANHKEYTRPTDCSGFDWSVAYWMLEDDMEVRNRLTFNNTQLTKRLRAAWL
FT KCIGNSVLCLSDGTLLAQTVPGVQKSGSYNTGSSNSRIRVMAAYHCGANWAMAMGDDAL
FT EAPNSDLEEYKTLGFKVEVGRELEFCSHIFRNPTLAIPVNTNKMLYKLIHGYNPECGNP
FT EVIQNYLAAVFSVLQELRHDRELVAKLHQWLVPSATTKEH"
FT gene 3572. .5725
FT /gene="P5"
FT CDS 3572. .5725
FT /codon_start=1
FT /transl_except=(pos:4196. .4198,aa:OTHER)
FT /gene="P5"
FT /product="minor capsid protein"
FT /note="read through protein"
FT /protein_id="AFI93515.1"
FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPR
FT RRRRRRGGNRRSRRTGVSRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL
FT KAYHEYKITSNLLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA
FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPKXVDSGSEPGPSPQP
FT TPTPTPQKHERFIAYVGIPMLTIQARENDDQIILGSLGNQRMKYIEDENQNYTNVSSEY
FT YSQSSMQAVPMYYFNVPKGQWSVDISCEGYQPTSSTSDPNRGRSDGMIAYPNADSDYWN
FT VGEADGVKISKLRNDNTYRQGHPELEINSCHFREGQLLERDATISFHVEAPTDGRFFLV
FT GPAIQKTAKYNYTISYGDWTDRDMELGLITVVLDEHLEGTGSANRVRRPPREGHTYMAS
FT PREPEGKPVGNKPRDETPIQTQERQPDQTPSDDVFDAGSVNNGGSTESLQLEFGVNSDS
FT TYDATVDGTDWPRIPLPGHPPEPRVSGNSRTVTDFSPEADLLENWDAEHFDPGYSKEDV
FT AAATIIAHGSIQDGRSMLEKREENVKNKTSSWKPPLPKAVSPAIAKLRSIRKSQPLEGG
FT TLKKDATDGVSSIGSGSLTGGTLKRKVTIEERLLQTLTTEQRLWYENLKKTNPLAATQW
FT LFEYQPPPQVDRNIAERPFQGRK"
FT gene 3572. .4198
FT /gene="P3"
FT CDS 3572. .4198
FT /codon_start=1
FT /gene="P3"
FT /product="major capsid protein"
FT /protein_id="AFI93516.1"
FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPR
FT RRRRRRGGNRRSRRTGVSRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL
FT KAYHEYKITSNLLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA
FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPK"
FT gene 3597. .4067
FT /gene="P4"
FT CDS 3597. .4067
FT /codon_start=1
FT /gene="P4"
FT /product="putative movement protein"
FT /protein_id="AFI93517.1"
FT /translation="MSMVVYNNQEGEEGNPFAGALTEFSQWLWSRPLGNPGAEDVEEEA
FT IAAQEELEFPEDEAQARHSCLQRTTSWATPKEVSPSGRVYQTVRHSRMEYSRPTMSIRS
FT QATYFSSSARPLPPPPAPSLMSWTPIAKYHPSSPTSTSSKLRRAAPKLIKRG"
FT gene 5130. .5318
FT /gene="P6"
FT CDS 5130. .5318
FT /codon_start=1
FT /gene="P6"
FT /product="ORF6"
FT /protein_id="AFI93518.1"
FT /translation="MLQSMVQTGPEFLYQGTHLNLEFPAIQELLLTFLRKPIYWRIGMP
FT NTSTLVIPKKMSLLLLL"
FT gene 5348. .5725
FT /gene="P7"
FT CDS 5348. .5725
FT /codon_start=1
FT /gene="P7"
FT /product="ORF7"
FT /protein_id="AFI93519.1"
FT /translation="MLEKREENVKNKTSSWKPPLPKAVSPAIAKLRSIRKSQPLEGGTL
FT KKDATDGVSSIGSGSLTGGTLKRKVTIEERLLQTLTTEQRLWYENLKKTNPLAATQWLF
FT EYQPPPQVDRNIAERPFQGRK"
XX
SQ Sequence 5865 BP; 1627 A; 1476 C; 1425 G; 1337 T; 0 other;
jq346191 Length: 5865 10-MAY-2012 Type: N Check: 5759 ..
1 gaaattgcag ctttagcgca taaactttac actcattgcg aacgttatag
51 catatgattg tattgactca gtctggaacc ttgcttttcg accaaagatt
101 taaactttca aagtttcttt ttgtagtcat tgcaacaggt tttcctcttc
151 tcctgcaaca agcgagctta ctttacggtt acaatcatga acagatttac
201 cgcatttgcc gctcttttct ttatgttctc cctttgctca actgcaaaag
251 aggcaggatt tcaacatccg gccttcaact tccgaggcac ctccattatg
301 agtgtctcga gtggggatta ctctgcggca cccaccccgc aatacaaatc
351 gtgggccctt ccatcattgt cgaactcgac aaccccacca ccgctgctgc
401 ttacagatcg gagctactac gaattagttc aagctcttat gtcaaaaatt
451 cggttggatt ttcaaatggt tggggacatg acatggaggc atttgtcaga
501 aatgctattt gcctcctgga actccgtgag agaagtatcc ctcagagcgg
551 cctccgtaac cttatgggca attatcagca tttggttcgg tctctattgg
601 acgcttgcac ggttgattac tttgttcctc tggactttca gcatagaagc
651 cttatgctta attttgctcg gttgtataac cagcttgatc tacaagggcg
701 cgctaagtct ttcagagcac ttaccggttt tcctgtttat gtcccctctg
751 aagattattt ggagggcagc tttctccaaa aggaattaca agaatgagag
801 ggctgtggaa ggatacaaag ggttttcggt cccacagaaa ccgccaaagt
851 ctgccgtaat tgaactacaa catgaaaacg gcagccatct cgggtacgcg
901 aactgcattc gcttgtacag tggagagaac gcctgggtga cagctgaaca
951 ctgtctagaa ggcgctttcg caacgtcgtt gaaaactgga aacaggattc
1001 cgatgtcgac tttctttccc attttcaaaa gtacccgtaa tgatatctcc
1051 atactagtag gtccacccaa ctgggaaggt ctactatcag tcaaaggagc
1101 tcatttcatt acagctgaca aaatcggcaa aggtcctgcc tctttctaca
1151 ctcttgagaa aggggagtgg atgtgccata gtgccaccat agatggagcc
1201 catcaccagt tcgtgtctgt tttatgcaac actggacccg gatattccgg
1251 aacagggttt tggtcttcaa agaatctgct tggtgtgctt aaaggcttcc
1301 cactggaaga ggagtgtaac tacaatgtta tgtctgttat accctcgatc
1351 ccaggaatca cttccccaaa ttatgtgttt gagtcgaccg ccgtaaaagg
1401 ccgcgtcttc tcggatgaag ctgtgaaaga gctagagcgg gaagcatccg
1451 aagccgtcaa gaaacttgcc agatttaaat cacttaccgg caagaactgg
1501 gctgatgatt atgactccga tgaggattac ggtctggaga gagaggctgc
1551 aacaaatgcg cccgcagaga aaactgctca aacaaactca gcagagaaga
1601 ctgctccatc aacttcagca gagaaaactg ctccaacaaa caagccttta
1651 aatgggcaag cggcaccgtc cgccaaaaca aacggcaact ccgacatccc
1701 cgacgccgct acaagcgcac caccaatgga caaaatggtc gaacagatca
1751 tcacagctat ggtggggaga atcaatctct cggagataga ggagaagata
1801 gtgagcaggg tgtctcagaa agccctgcag aagcccaaac aaaagaagcg
1851 cggaaggcgt ggagggaaga acaagcacaa cagttcacct cctacttcaa
1901 cgcaatctac aagtggggcg cccaagaagg aggctgcccc ccaggcttca
1951 ggaagtgcgg gcacatcccg tgctactacc acccccgcac cagaggcgaa
2001 acccagtggg ggcaaaaact ctgccaagtt catcccgagc tggcggagaa
2051 aacagcagga ttcggctggc caaaagccgg atctgaagct gaactccaaa
2101 gcctgaatct acaggctgcc aggtggctcc aacgcgcgga gtcggccact
2151 atccctggcg cagaagcaag aaagcgcgtg attgagaaaa cagtggaggc
2201 atacagaaat tgtataacta acgccccact gtgctccctt aaatccaaac
2251 tggattgggc tggctttcaa caagatatcc gtgaagcagt ccagtccctt
2301 gagctagacg ctggtgtagg tattccctat atcgcgtatg gcctccccac
2351 acaccgagga tgggttgagg accataagct tctcccagtg ctcactcagc
2401 tgacctttga ccgtctacag aagatgtcag aggccagctt tgaggatatg
2451 agcgcagaag agctggttca agaagggctc tgtgatccta tcagactatt
2501 tgtcaaagga gagccccata aacagagcaa actcgatgaa ggccgctacc
2551 gcctcatcat gtctgtttcc ttggtggatc aactggtagc ccgggttctg
2601 ttccaaaatc agaacaaaag ggaaatttcc ctgtggaggt ctgtgccttc
2651 caaacccggt tttggccttt caactgacac tcaaattgct gaattcttgg
2701 agtgtcttca aaaggtgtct ggagcgccat ctgtggaaga attgtgtgca
2751 aatcacaagg agtacacgcg cccaaccgac tgttccggtt tcgactggtc
2801 agtcgcgtat tggatgctgg aggatgatat ggaagtgaga aatcgcctga
2851 catttaataa cacccagctc accaaacgcc ttcgggctgc ctggttgaag
2901 tgcataggaa actccgtcct gtgcctgtcc gatggcactt tacttgccca
2951 aactgttccc ggtgtgcaaa agagcggaag ttacaataca ggttcctcca
3001 actctcgaat ccgggttatg gctgcctatc actgtggcgc caactgggca
3051 atggccatgg gggacgatgc tctcgaagcc cccaactccg acctggagga
3101 gtataaaaca ctaggtttca aagtcgaggt aggtcgagaa ctcgaattct
3151 gttcacacat tttcagaaat ccgaccctcg ccattccggt caacaccaac
3201 aaaatgctct acaagttgat ccatggttat aatccggaat gtggcaatcc
3251 agaagtgatt caaaactatc tggctgcagt attctctgtg ctgcaggaac
3301 tccgacacga tcgtgagctc gttgccaagc tccaccagtg gttggttccg
3351 agtgccacca caaaagaaca ctgaaggagc tcactaaaac tagccaagca
3401 tacgcgagtt gcaagcattg gaagttcaag cctcgttaca tcaaccggac
3451 aaaatagatt ataaattctt agcgggattt gctttaggat tctcatccgc
3501 aatcccattt tcagtagccg gtttatattt tgtttaccta aagatttcct
3551 cccacgtgcg atcaattgtt aatgagtacg gtcgtggtta aaggaaatgt
3601 caatggtggt gtacaacaac caagaaggcg aagaaggcaa tcccttcgca
3651 ggcgcgctaa cagagttcag ccagtggtta tggtcacggc ccctgggcaa
3701 cccaggcgcc gaagacgtag aagaggaggc aatcgccgct caagaagaac
3751 tggagtttcc cgaggacgag gctcaagcga gacattcgtg tttacaaagg
3801 acaacctcat gggcaactcc caaggaagtt tcaccttcgg gccgagtcta
3851 tcagactgtc cggcattcaa ggatggaata ctcaaggcct accatgagta
3901 taagatcaca agcaacttac ttcagttcgt cagcgaggcc tcttccacct
3951 cctccggctc catcgcttat gagttggacc cccattgcaa agtatcatcc
4001 ctccagtcct acgtcaacaa gttccaaatt acgaagggcg gcgccaaaac
4051 ttatcaagcg cggatgataa acggggtaga atggcacgat tcttctgagg
4101 atcagtgccg gatactgtgg aagggaaatg gaaaatcttc agataccgca
4151 ggatccttca gagtcaccat cagggtggct ttgcaaaacc ccaaataggt
4201 agactccgga tcagagcctg gtccaagccc acaaccaaca cccactccaa
4251 ctccccagaa gcacgagcga tttattgctt acgttggcat acctatgcta
4301 accattcagg ccagggagaa cgacgaccaa atcatattgg gttccttagg
4351 aaaccaaagg atgaaatata tagaggacga gaaccagaac tatacaaatg
4401 ttagttctga gtattactct caatcgagca tgcaagccgt ccctatgtat
4451 tactttaatg tcccgaaagg gcaatggtca gtcgacatca gctgcgaagg
4501 gtatcaaccc actagcagca cctcggatcc aaaccggggt aggagtgacg
4551 ggatgatcgc gtatccaaac gcggattccg attattggaa tgttggtgaa
4601 gcggatggtg tcaaaatttc gaagctacgc aacgataaca cctaccgcca
4651 aggtcaccca gaacttgaaa ttaactcgtg tcattttcgc gagggccaac
4701 tccttgaacg ggacgctaca attagcttcc acgttgaagc gcctactgat
4751 gggcgattct ttctcgttgg tcccgctatt cagaaaaccg caaagtataa
4801 ctatactatc tcatacggtg actggacgga ccgagacatg gaactggggc
4851 tgatcaccgt ggtgcttgat gaacatttag aaggcactgg ttcggctaac
4901 agagtgcggc ggcccccacg ggagggccac acctatatgg cctcgccgcg
4951 cgaaccggaa ggaaaaccgg ttggaaataa accaagggac gaaaccccga
5001 tacaaacgca ggaaagacaa cctgatcaaa ctccgtctga cgacgtattc
5051 gatgctggtt cggtaaacaa cggcggctca actgagtcgc tgcaattgga
5101 gttcggggta aactcggata gtacctacga tgctacagtc gatggtacag
5151 actggcccag aattcctcta ccagggcacc cacctgaacc tagagtttcc
5201 ggcaattcaa gaactgttac tgacttttct ccggaagccg atctattgga
5251 gaattgggat gccgaacact tcgaccctgg ttattccaaa gaagatgtcg
5301 ctgctgctac tattatagcg cacggcagta ttcaagatgg gcgaagtatg
5351 ttggagaaga gagaggaaaa tgtcaagaac aaaacctcct cctggaagcc
5401 cccgttacct aaagcggtga gcccagccat agccaaattg cgctcgattc
5451 gcaaatccca acccctcgag ggagggaccc ttaagaaaga cgccactgat
5501 ggtgtctcat ctattggcag tggttctcta acaggtggta cgcttaagag
5551 gaaggttact attgaagagc gtttactgca gaccttaaca actgagcaaa
5601 ggctgtggta cgagaatttg aagaaaacta accctctagc tgctacccaa
5651 tggctgtttg aatatcagcc acctccccaa gtagatagaa acatagctga
5701 aaggccattc caagggagga aatgagtcga ctcacgactt aaaactgagt
5751 gtccgccgga cattaagcgg aacgaaagcc gaaaggtgat taggctctca
5801 acgcctgcta gagaccgtcg aaagacgcga ctgtgtagcc aggatcctct
5851 tacagggttg tgtag