Sequence of DPV Sweet potato leaf curl virus
Sweet potato leaf curl virus isolate Bella Vista segment DNA-A, complete sequence.
ACC No: JQ349087
Dated: 2012-10-19 | Length: 2828 | CRC: 1716819300
ID JQ349087; SV 1; circular; genomic DNA; STD; VRL; 2828 BP.
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AC JQ349087;
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DT 21-MAR-2012 (Rel. 112, Created)
DT 19-OCT-2012 (Rel. 114, Last updated, Version 2)
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DE Sweet potato leaf curl virus isolate Bella Vista segment DNA-A, complete
DE sequence.
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KW .
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OS Sweet potato leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RC DOI: 10.1007/s13314-012-0073-7
RP 1-2828
RA Rodriguez Pardina P., Luque A., Nome C., Lopez Colomba E.,
RA Fuentes Delgado S., Di Feo L.;
RT "First report of Sweet potato leaf curl virus infecting sweet potato in
RT Argentina";
RL Australas. Plant Dis. Notes 0:0-0(2012).
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RN [2]
RP 1-2828
RA Rodriguez Pardina P.E., Di Feo L.;
RT ;
RL Submitted (03-JAN-2012) to the INSDC.
RL Instituto de Patologia Vegetal, INTA, Camino 60 Cuadras Km 5 1/2, Cordoba
RL X5020ICA, Argentina
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FH Key Location/Qualifiers
FH
FT source 1. .2828
FT /organism="Sweet potato leaf curl virus"
FT /segment="DNA-A"
FT /host="sweet potato cultivar Okinawa"
FT /isolate="Bella Vista"
FT /mol_type="genomic DNA"
FT /country="Argentina"
FT /collection_date="2010"
FT /db_xref="taxon:100755"
FT CDS 98. .469
FT /codon_start=1
FT /product="AV2"
FT /protein_id="AFD64625.1"
FT /translation="MLFQSWSPSMAELWDPLQNPLPDTLYGFRCMLSVKYLQSILKKYE
FT PGTLGFELCSELIRIFRVRQYDRANARYAEISSVWGETGKTEAELRDSYRALHWECCPN
FT CCPKLCPGFKRRPDEEKEG"
FT CDS 294. .1058
FT /codon_start=1
FT /product="coat protein"
FT /note="CP"
FT /protein_id="AFD64620.1"
FT /translation="MTGRMRVTQRFHPYGGRPVRRRLNFETAIVPYTGNAVPIAARSYV
FT PVSRGVRMKRKRGDRIPKGCVGPCKVQDYEFKMDVPHSGTFVCVSDFTRGTGLTHRLGK
FT RVCIKSMGIDGKVWMDDNVAKRDHTNIITYWLIRDRRPNKDPLTFSQAFTMYDNEPTTA
FT KIRMDLRDRMQVLKKFSVTVSGGPYNHKEQALVRKFFKDLYNHVTYNHKDEAKYENHLE
FT NALMLYSASSHASNPVYQTLRCRAYFYDSHKN"
FT CDS complement(1074. .1508)
FT /codon_start=1
FT /product="replication enhancer protein"
FT /note="REn"
FT /protein_id="AFD64622.1"
FT /translation="MDSRTGESLSHAQTTRALEFETNPMSVGRTAPFHLRIMYVHENTQ
FT GRTILKFQLRVNHRERRQLGFHKIFLQFRILTTRLTGAIHSWTGISERLKWRICNELAN
FT IGFLSLVNLVFVIRYLPRVCSWIDEVDTVDCIDDVKVLLY"
FT CDS complement(1225. .1671)
FT /codon_start=1
FT /product="transcriptional activator protein"
FT /note="TrAP"
FT /protein_id="AFD64623.1"
FT /translation="MSNLPSGLKRKCPIQEPLHAAAKKTKRKVPEQRTRIVWKGCGCSA
FT FITTTCKFQHGFTHRGITKSCSDYESTRIRNQPHVCGSDCTIPSPNNVCPREHTGENHP
FT QIPAEGQPQGKEATGIPQDLPPIPDPDDPSNWCYSQLDWYFGTP"
FT CDS complement(1580. .2674)
FT /codon_start=1
FT /product="replication associated protein"
FT /note="Rep"
FT /protein_id="AFD64621.1"
FT /translation="MAPPKRFKIQAKNYFITYPRCSLSKEDCLAQILNIQTPTNKKYIH
FT IAKELHEDGEPHLHVLVQFEGKFVCTNSRFFDLVSPTRSNHFHPNIQGAKSSSDVKSYV
FT DKDGDTLTWGEFQVDGRSARGGQQTANDAAAEALNAGSKEAALQIIREKLPEKYLFQYH
FT NLVSNLDRIFSPPPSVYSSPFSSSSFNAVPDIISDWAAENVMDSAARPDRPISIVIEGP
FT SRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDW
FT QSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKLWLDKPEQGALKNWATANAIFCDVQSPF
FT WTQEEVSHSGATARSSEEDQEESS"
FT CDS complement(2260. .2517)
FT /codon_start=1
FT /product="AC4"
FT /protein_id="AFD64624.1"
FT /translation="MGNLTSMCWCSSKVNSSAQIADSSTLCHQQGRITFTPTSRELNPR
FT PMSSPTLIRTGIPSPGVNSRSTADLLEEVSRLLTTQPQRL"
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SQ Sequence 2828 BP; 734 A; 582 C; 683 G; 829 T; 0 other;
jq349087 Length: 2828 19-OCT-2012 Type: N Check: 378 ..
1 accggtgccc gccgcgccct ttaaaagtgg gccccacaaa tgggccacgc
51 gtttttcccg tacttacttt aatgatgaca ttgctttata aggaccaatg
101 ctgttccagt cttggtcgcc aagtatggct gaattgtggg accctttgca
151 gaacccacta ccagatactt tatacggttt taggtgtatg ctatccgtaa
201 aatacttgca aagtattttg aaaaaatacg agccaggaac cctagggttc
251 gagctctgtt cggagttaat ccgtatcttc agggtcaggc agtatgacag
301 ggcgaatgcg cgttacgcag agatttcatc cgtatggggg gagaccggta
351 agacggaggc tgaacttcga gacagctatc gtgccctaca ctgggaatgc
401 tgtcccaatt gctgcccgaa gctatgtccc ggtttcaaga ggcgtccgga
451 tgaagagaaa gaggggtgac cgcatcccga agggatgtgt tggtccctgc
501 aaggtacagg actatgagtt caagatggat gtcccacata gtgggacctt
551 tgtttgtgtt tctgatttta ctagaggtac tgggcttact catcgtttgg
601 gtaagagggt gtgtattaag tcaatgggta tagatgggaa ggtctggatg
651 gatgacaacg tggccaagag ggaccacact aacatcatta cttactggtt
701 gatccgagat aggaggccca ataaggatcc attgacgttt tcccaggcgt
751 ttacaatgta tgataacgag cccactactg ctaagatccg aatggatctg
801 cgagatagaa tgcaggtgtt gaagaagttt tctgttactg tttctggtgg
851 tccttataac cacaaagagc aggctttagt tcggaagttt tttaaggatt
901 tgtataatca tgttacttat aatcataagg atgaagctaa gtatgagaat
951 catttagaga atgcattaat gttgtatagt gctagcagtc atgctagcaa
1001 tcctgtgtat cagaccctgc gttgcagggc ttatttctat gattcgcaca
1051 aaaattaata aaattttatt ttattaatac agtaatacct ttacatcatc
1101 aatacaatct accgtatcta cttcatctat ccaagaacat actcttggaa
1151 gatatctaat aacaaacact aaattaacta gactaagaaa ccctatattt
1201 gctaattcat tacatatgcg ccatttaagg cgttccgaaa taccagtcca
1251 actgtgaata gcaccagtta gacgggtcgt caggatccgg aattggagga
1301 agatcttgtg gaatcccagt tgcctccttt ccctgtggtt gaccctcagc
1351 tggaatttga ggatggttct cccctgtgtg ttctcgtgga catacattat
1401 tcggagatgg aatggtgcag tccgacccac agacatgggg ttggtttcga
1451 attcgagtgc tctcgtagtc tgagcatgac ttagtgattc ccctgtgcgt
1501 gaatccatgc tggaacttgc aggttgtggt tatgaaggct gaacagccac
1551 aacccttcca cactatcctc gtcctctgtt caggaacttt cctcttggtc
1601 ttcttcgctg ctgcgtgcag tggctcctga atgggacact tcctcttgag
1651 tccagaaggg agattggaca tcgcagaata tagcgtttgc tgttgcccaa
1701 ttcttgagtg ctccttgctc tggcttgtcc agccagagtt taaatgagga
1751 accctctcct ggattgcaga ggaagatagt gggaattcca cctttaattt
1801 gaactggctt tccgtattta cagttgcttt gccagtcctt ctgggccccc
1851 atgaactctt taaagtgttt tagatattgg gggttgacgt catcaatgac
1901 gttataccaa gcactgttgc tgtatacttt tgggcttaga tctaaatgcc
1951 cacacaaata attgtgaggg cccaaagacc tggcccatac tgttttgcct
2001 attctgcttg ggccttcaat aacaatggat atgggtctat ccggccgcgc
2051 agcggaatcc atgacatttt cagcggccca gtcgctgata atgtcaggaa
2101 cggcattgaa agaagatgaa gaaaaaggtg aagaatatac agaaggtgga
2151 ggagaaaaaa tcctatctaa attagaaact aaattatgat attgaaataa
2201 atatttttca gggagtttct ccctgattat ttgcaacgca gcttctttag
2251 aacctgcgtt tagagcctct gcggctgcgt cgttagcagt ctgctgacct
2301 cctctagcag atctgccgtc gacctggaat tcaccccagg tgagggtatc
2351 cccgtcctta tcaacgtagg acttgacatc ggacgaggat ttagctccct
2401 ggatgttggg gtgaaagtga ttcgaccttg ttggtgacac aaggtcgaag
2451 aatctgctat ttgtgcagac gaatttacct tcgaactgca ccagcacatg
2501 gaggtgaggt tccccatcct cgtgcagttc tttggctatg tgtatgtatt
2551 ttttgttggt tggggtttgg atatttagga tttgggctag gcagtcctct
2601 ttagagagag aacagcgtgg ataagtaatg aagtaatttt ttgcttggat
2651 tttaaaacgt ttgggaggag ccatttggag acactcacaa gttcaaatga
2701 attggagact ggagacaata tatagtatgt ctccaaatgg catttttgta
2751 atttagaaga tccttttaac tttaattcaa attccgacaa ctatgggtcc
2801 accttaaggc gggcaccgta ttaatatt