Sequence of DPV Lily mottle virus

Lily mottle virus isolate LMoV-CQ HC protein gene, partial cds.

ACC No: JQ361105

Dated: 2012-04-25 | Length: 1374 | CRC: -1075799838

                
ID   JQ361105; SV 1; linear; genomic RNA; STD; VRL; 1374 BP.
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AC   JQ361105;
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DT   25-APR-2012 (Rel. 112, Created)
DT   25-APR-2012 (Rel. 112, Last updated, Version 1)
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DE   Lily mottle virus isolate LMoV-CQ HC protein gene, partial cds.
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KW   .
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OS   Lily mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1374
RA   Wang L., Kong B., Chen H.;
RT   "Detection of Lily mottle virus in Lily by RT-PCR";
RL   Unpublished.
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RN   [2]
RP   1-1374
RA   Wang L., Kong B., Chen H.;
RT   ;
RL   Submitted (05-JAN-2012) to the INSDC.
RL   Department of Phytopathology, Yunnan Agricultural University, National
RL   Center for Agricultural Biodiversity, Kunming, Yunnan Province 650201,
RL   China
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1374
FT                   /organism="Lily mottle virus"
FT                   /host="Lilium davidii (lily)"
FT                   /isolate="LMoV-CQ"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Chongqing"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:32624"
FT   CDS             <1. .>1374
FT                   /codon_start=1
FT                   /product="HC protein"
FT                   /note="HC-Pro"
FT                   /protein_id="AFI26393.1"
FT                   /translation="SGPGDKFWAGFNSQFLRIKPKGIPHTCTSNFNVFECGQVAALMCQ
FT                   ALYPCGRITCQQCASEYLELTKVELGEKLSDGLYRTSSQIRENHQEFAHVAHILTVIAD
FT                   LLSLKNNNMEAFTEVHKLIGEQTQSPFTHLNRLNSILIKGSDMSSNELYECSDCICELA
FT                   RFQKNRTDNIKKLDVSVFRNKASSKSYFNLDLMCDNQLDKNGNFEWGQRGYHAKRFLSN
FT                   YFEVVNTQNAYREHTLRKHPNGTRELAIGKFIVSTNFEVFRKSMEGKRIPQMPVTEACL
FT                   SQRGERFIYQCCCVTNEDGTPLESTFRMPTKNTLVLGNTGDEKFVDMPTDTDEKMYIAR
FT                   EGYCYINIFFAMLINVRESQAKAFTKMVRDRLVPELGTWPTMIDVATACHTLTVFFPDT
FT                   LSAELPRILVDHNTKTMHVIDSYGSVSTGYHQLKANTVSQLVLFASDTLKSEMKHYQVG
FT                   "
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SQ   Sequence 1374 BP; 409 A; 331 C; 332 G; 302 T; 0 other;

jq361105 Length: 1374  25-APR-2012  Type: N  Check: 5570  ..

       1  tcgggcccag gcgataaatt ctgggcagga ttcaactccc aattcctcag
      51  gatcaaaccc aagggaatac cacacacttg cacatcaaac ttcaatgtct
     101  tcgagtgtgg gcaggtcgcg gctcttatgt gccaagcact gtacccatgt
     151  gggagaatta catgtcagca gtgtgcgtcc gagtacctgg agctgacgaa
     201  ggttgaactc ggggaaaagc tcagcgatgg tttgtataga acaagttcgc
     251  aaattcgtga aaaccaccaa gagttcgccc atgtggcaca catactcact
     301  gtgatagctg atcttctgag cctcaagaac aacaacatgg aggcgttcac
     351  agaggtccac aaactcatag gtgagcaaac acagtcacca ttcacacacc
     401  tcaatcgctt gaactcaata ctgatcaaag gcagcgatat gagcagcaat
     451  gagctgtatg aatgttcaga ctgcatttgt gagctagcgc gattccagaa
     501  gaacaggaca gataacatca agaaactgga cgttagcgtg tttcggaata
     551  aagcttcctc caagtcatac ttcaacctgg acttgatgtg tgacaaccaa
     601  ctcgacaaga atggaaattt cgaatggggc cagcgaggct atcatgccaa
     651  acggttctta tcgaattatt ttgaggttgt caacacacag aatgcctacc
     701  gagagcacac actgaggaag catccgaatg gcacgcgaga gctcgcaatc
     751  gggaaattta tagtgtcaac aaactttgaa gtgtttcgca agagcatgga
     801  agggaagcgc ataccacaaa tgcctgttac tgaggcttgc ctgagtcagc
     851  gtggagagcg tttcatttac cagtgctgct gtgtaacaaa cgaagatggc
     901  actccactcg agtcgacatt caggatgcca acgaagaaca cactcgtgct
     951  tgggaacacg ggtgacgaga aatttgtcga catgcccacc gacacggatg
    1001  agaagatgta tatagctcga gagggctact gctacatcaa catatttttc
    1051  gccatgttaa taaacgttcg tgaaagtcaa gcaaaggcat ttacgaagat
    1101  ggtgcgagac cgcctcgtac ccgagcttgg aacatggcca accatgatcg
    1151  atgtggcaac agcatgccac acattgactg tcttcttccc agacacactg
    1201  agcgcagaac tcccgcgaat tctcgtggac cacaacacta agacgatgca
    1251  tgtgattgac tcatacggat ctgttagcac tggctaccac cagttaaagg
    1301  ctaacacagt gagtcagcta gttctctttg ctagtgacac gctgaagtca
    1351  gaaatgaagc actatcaggt cggc