Sequence of DPV Tomato leaf curl Joydebpur virus
Tomato leaf curl Joydebpur virus clone HJP07 segment DNA-A, complete sequence.
ACC No: JQ654462
Dated: 2012-05-17 | Length: 2770 | CRC: -2010651088
ID JQ654462; SV 1; circular; genomic DNA; STD; VRL; 2770 BP.
XX
AC JQ654462;
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DT 17-MAY-2012 (Rel. 112, Created)
DT 17-MAY-2012 (Rel. 112, Last updated, Version 1)
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DE Tomato leaf curl Joydebpur virus clone HJP07 segment DNA-A, complete
DE sequence.
XX
KW .
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OS Tomato leaf curl Joydebpur virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2770
RA Kumar J., Tuli R.;
RT "Evolution of a Tomato leaf curl Joydebpur virus variant in India";
RL Unpublished.
XX
RN [2]
RP 1-2770
RA Kumar J., Tuli R.;
RT ;
RL Submitted (09-FEB-2012) to the INSDC.
RL Agri-Biotechnology, National Agri-Food Biotechnology Institute, India,
RL C-127, Phase-8, Mohali, Punjab 160071, India
XX
FH Key Location/Qualifiers
FH
FT source 1. .2770
FT /organism="Tomato leaf curl Joydebpur virus"
FT /segment="DNA-A"
FT /host="Phaseolus aureus"
FT /mol_type="genomic DNA"
FT /country="India"
FT /collection_date="Mar-2011"
FT /clone="HJP07"
FT /db_xref="taxon:309390"
FT gene 208. .510
FT /gene="AV2"
FT CDS 208. .510
FT /codon_start=1
FT /gene="AV2"
FT /product="movement protein"
FT /protein_id="AFJ54074.1"
FT /translation="MLAVKYLQLVEKTYSPDTLGYDLIRDLISVIRARNYVEATSRYNH
FT FHARLEGTPPSQLRQPICQPCCCPHCPRHQSKSMGEQAHEQEAQDVQDVQKPRCS"
FT gene complement(292. .582)
FT /gene="AC5"
FT CDS complement(292. .582)
FT /codon_start=1
FT /gene="AC5"
FT /product="AC5"
FT /protein_id="AFJ54076.1"
FT /translation="MTLPMCWTSCRDSKDWTLHGPSHPLGTSGLLYILYILGFLFMGLF
FT AHAFALVTRTMGAAARLAYGLSKLRRRRTFEAGVEMIISAGRFDIISSPDD"
FT gene complement(305. .979)
FT /gene="AC6"
FT CDS complement(305. .979)
FT /codon_start=1
FT /gene="AC6"
FT /product="AC6"
FT /protein_id="AFJ54077.1"
FT /translation="MVFILASLLLVIHNIIVNSNKLLHERLLLRCILTTSHSCMPLPQH
FT LIPVTMHVLHSRRTWLIIKHVEYLTKVLGLINGPTISNKEKHNTIRVILSLDVLIHPNL
FT AQNIDGLNTKPFTNSLGQPSSTSNITNTHDFTYVLDIMSGLKRLDLTWAFTSPRNIWAS
FT VHPVHPGLPVHGPVRPCFCFGDADNGGSSTAGIWAVEVETAAYLRGGRGNDYICWSLRH
FT NF"
FT gene 314. .1084
FT /gene="AV1"
FT CDS 314. .1084
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AFJ54075.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKAKAWA
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVQHIGKVMCVSDVTRGTGLTQR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH
FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(1081. .1485)
FT /gene="AC3"
FT CDS complement(1081. .1485)
FT /codon_start=1
FT /gene="AC3"
FT /product="REn"
FT /note="replication enhancer"
FT /protein_id="AFJ54078.1"
FT /translation="MDLRTGEPITAAQAENGVFIWEITNPLYFKITEHHHRPFLMNHDI
FT ITVQVQFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVLRFLNNFAVISINN
FT VIRAVDHVLWNVFAQTIYVQSSNIIKFNIY"
FT gene complement(1226. .1630)
FT /gene="AC2"
FT CDS complement(1226. .1630)
FT /codon_start=1
FT /gene="AC2"
FT /product="TrAP"
FT /note="transactivator protein"
FT /protein_id="AFJ54079.1"
FT /translation="MRPSSPSKAHSTLVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR
FT CHDYGFTHRGTHHCSSGREWRVYLGDNKSPVFQDNRAPPPAIPNEPRHHNSPSTIQSQP
FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI"
FT gene complement(1533. .2618)
FT /gene="AC1"
FT CDS complement(1533. .2618)
FT /codon_start=1
FT /gene="AC1"
FT /product="Rep"
FT /note="replication initiation protein"
FT /protein_id="AFJ54080.1"
FT /translation="MPPPKRFQIYAKNYFLTYPQCSLTKEDALSQLQNLSTPTNKLFIR
FT VSRELHENGEPHLHVLIQFEGKFKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKAYV
FT EKDGDFIDFGVFQIDGRSARGGQQSANDAYAEAINSGSKAAALNILREKAPKDYVLQFH
FT NLNANLDRIFTPPLEVYVSPFSSSSFDQVPDELDEWAAENVVSAAARPLRPVSVVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLEGPL
FT YSCSNQSAAQASQEGDQASSR"
FT gene complement(2168. .2467)
FT /gene="AC4"
FT CDS complement(2168. .2467)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4"
FT /note="suppressor of PTGS"
FT /protein_id="AFJ54081.1"
FT /translation="MKMGNLICTSSYSSKVNSNAKTTDSSTSFPLPGQHISIRTFRELK
FT ARQMSRPMWRKTETSLILEFSRSMEDQLEEVSSLPTTHMPRQSIQGPKLRPSIY"
XX
SQ Sequence 2770 BP; 760 A; 578 C; 650 G; 782 T; 0 other;
jq654462 Length: 2770 17-MAY-2012 Type: N Check: 14 ..
1 accggatggc cgcgattttt tcctagtggg ccccacaacg cacgtgctta
51 caaggacaat tggaccaatt agaaacgccg ctcaaagctt aattatttcg
101 tggtccccta tataaacttg ggctccaagt agtgcactca taccaatgtg
151 ggatccaggg atccgttagt aaacgacttt cctgaaaccg ttcacggttt
201 taggtgtatg ctagccgtta aatatcttca gctagtagaa aagacctatt
251 ctccagatac tctcgggtac gatttaatcc gggatttaat ttcagtcatc
301 agggctagaa attatgtcga agcgaccagc agatataatc atttccacgc
351 ccgcctcgaa ggtacgccgc cgtctcaact tcgacagccc atatgccagc
401 cgtgctgctg cccccattgt ccgcgtcacc aaagcaaaag catgggcgaa
451 caggcccatg aacaggaagc ccaggatgta caggatgtac agaagcccag
501 atgttcctag gggatgtgaa ggcccatgta aggtccagtc ttttgagtcc
551 cgacatgatg tccaacacat aggtaaagtc atgtgtgtta gtgatgttac
601 tcgtggaact gggctgaccc aacgagttgg taaaaggttt tgtgttaagt
651 ccgtctatgt tctgggcaag atttggatgg atgagaacat caagactaag
701 aatcacacga atagtgttat gtttttcctt gttagagatc gtaggcccgt
751 tgataagccc caagactttg gtgaggtatt caacatgttt gataatgagc
801 caagtacggc gactgtgaag aacgtgcatc gtgacaggta tcaggtgttg
851 aggaagtggc atgcaactgt gactggtggt caatatgcat cgaaggagca
901 agcgctcgtg aagaagttta ttagagttaa caattatgtt gtgtataacc
951 agcaagaggc tggcaagtat gaaaaccata gtgagaatgc attaatgttg
1001 tacatggcgt gtactcatgc ctctaatcct gtgtatgcta ctttgaagat
1051 acggatctat ttctatgatt ccgtaacaaa ttaataaata ttgaatttta
1101 ttatgtttga actttgtaca taaattgttt gcgcgaatac attccataat
1151 acatgatcga cagctctaat tacattgttt atactaatta cagcaaaatt
1201 atttaaaaac cgcaacactt gggtcctaaa tacccttaag aaatgaccag
1251 tctgaggctg taaggtcgtc cagattcgga aggttagaaa acatttgtgt
1301 atccccaacg ctttcctcag gttgtgattg aattgtactt ggactgttat
1351 gatgtcgtgg ttcattagga atggccggtg gtggtgctcg gttatcttga
1401 aatacagggg atttgttatc tcccagataa acacgccatt ctcggcctga
1451 gctgcagtga tgggttcccc tgtgcgtaaa tccatagtcg tggcagcgta
1501 atgcgatgaa atatgaacag ccgcagtcca ggtcaacgcg acgacgcctg
1551 gtccccttct tggctagcct gtgctgcact ttgattggaa caagagtaga
1601 gtgggccttc gagggtgatg aaggtcgcat tctttaaagc ccaatttttg
1651 agtgcggaat tcttctcttc atccaagaac tctttatagc tggaattggg
1701 tcctggattg cagaggaaga tagcgggaat tccaccttta atttgaactg
1751 gctttccgta tttcgtattt gattgccagt ccctttgggc ccccatgaat
1801 tctttaaagt gctttaggta gtggggatcg acgtcatcaa tgacgttgta
1851 ccaggcgtca ttactgtaga ccttagggct aaggtctagg tgaccacaca
1901 aataattgtg tggacccaac gacctagccc acatggtctt ccctgtccga
1951 ctatcaccct ctatgactac acttacgggt ctcaaaggcc gcgcagcggc
2001 actcaccaca ttctcggcag cccattcgtc aagttcatcg ggaacttgat
2051 caaaagaaga agaagaaaaa ggagaaacat aaacctccaa cggaggtgta
2101 aaaatcctat ctaaatttgc atttaaatta tgaaactgta atacataatc
2151 cttgggagct ttctccctta atatattgag ggccgcagct ttggaccctg
2201 aattgattgc ctcggcatat gcgtcgttgg cagactgctg acctcctcta
2251 gctgatcttc catcgatctg gaaaactcca aaatcaatga agtctccgtc
2301 tttctccaca taggccttga catctgacga gcttttagct ccctgaatgt
2351 tcggatggaa atgtgctgac ctggtagggg aaacgaggtc gaagaatctg
2401 ttgttttggc atttgaattt accttcgaac tgtatgagga cgtgcagatg
2451 aggttcccca ttttcatgta attcacgaga aaccctgatg aataatttat
2501 tagtgggggt gcttaggttt tgaagttggg aaagtgcatc ctctttagtg
2551 agggaacact gtggataggt taagaaataa tttttagcat atatttgaaa
2601 tcgttttgga ggaggcatgt tgacttggtc aatcggtact caacaaactt
2651 ggctatgcaa tcggtgaatg gtactcaata tatagtgtga gtaccaaatg
2701 gcatgatcgt aattttgaaa gaaaattcaa aattcaaatc ccgacaaaag
2751 cggccatccg cactaatatt