Sequence of DPV Tobacco ringspot virus
Tobacco ringspot virus segment RNA2, complete sequence.
ACC No: JQ670669
Dated: 2012-04-01 | Length: 4010 | CRC: -918189684
ID JQ670669; SV 1; linear; genomic RNA; STD; VRL; 4010 BP.
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AC JQ670669;
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DT 01-APR-2012 (Rel. 112, Created)
DT 01-APR-2012 (Rel. 112, Last updated, Version 1)
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DE Tobacco ringspot virus segment RNA2, complete sequence.
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KW .
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OS Tobacco ringspot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC Secoviridae; Comovirinae; Nepovirus; Subgroup A.
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RN [1]
RP 1-4010
RA Sorrentino R., Alioto D., Rubino L.;
RT "Sequence analysis of Tobacco ringspot virus isolated from Aeonium";
RL Unpublished.
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RN [2]
RP 1-4010
RA Sorrentino R., Alioto D., Rubino L.;
RT ;
RL Submitted (13-FEB-2012) to the INSDC.
RL Dipartimento di Arboricoltura, Botanica e Patologia Vegetale - ARBOPAVE,
RL Universita di Napoli Federico II, Via Universita, 100, Portici, NA 80055,
RL Italy
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FH Key Location/Qualifiers
FH
FT source 1. .4010
FT /organism="Tobacco ringspot virus"
FT /segment="RNA2"
FT /host="Aeonium sp."
FT /mol_type="genomic RNA"
FT /country="Italy"
FT /collection_date="Mar-2011"
FT /db_xref="taxon:12282"
FT CDS 124. .3510
FT /codon_start=1
FT /product="polyprotein P2"
FT /protein_id="AFG19902.1"
FT /translation="MEPLLWQIDATSSWNNPLLFPGTRPECTPLSRVQTALAFFKDAAR
FT KFSKQADACDLMALAMERVAEHNGFAVRADNVRQLFNFVGQHVANPAERKALRKALREQ
FT REAFCASLPGAPFPLPPRIIQIPLRDLLETKLQMEREFCESLPGAPFPEPKPEGWGIPT
FT PPPLPPPFVWKGCHYNVVAPPPLIPKPPPPPTWKVIPRPCWRVVAPPPLVVYQPVGAPF
FT PRSRSQSALAFFRVAATCRQALVCELVREPAFMTCCASTGEVQEMTAMLTEARSSGKLL
FT TPKEVSSALALKRKEIKGAEENRISFDEGVHLSEEDVFHRVGLLKRFSAPKCDRTLVDV
FT LMPTEHEVVRYPGTRPDGGLQMCVSALPRMSEEAARKLLEKGWKNSKNVSLDIGVTSYM
FT PYGAPIVAFMTIMDGRTDDPEEAALCANYMDLGREKSKVLSLPLVTIPLSEIEHDVGIL
FT DCLYIVTYFHGIQSYQPGTLMMSYGTLEFQEYSNNSFTTATRVRESWEQILKRNENLGK
FT RVHAGIGVLGTIEKEMDTQLAEFPALNLETRPRPVVRTFQQPEQTGLNKCRSMRIGATN
FT FSGITGRKTLQTMPVVQHYEDPPPIQSKPRHSVSGHGFMAPTVVPDRSCCGVFSFKVPK
FT DAKKGKHLHTESLADMMRTYGGIHVQEWWGSCAINPIFKIRMHAPRNAFAGLSIACTFD
FT NFKRIDVAALGGSCPPSEMFEFPTRVFSLKDADVHEWDIDYGALTGNSLICWDNVITSP
FT RLLFYVVTTNQVVMAADWNCVVTVHIDRTQQVESFELAPTVTWPLSVGDSLSVDRYYEA
FT KELKLDGTTKLMYIDYNFGGPIKLTQKSSISFPRAVMARYIGFSGSIKGSIKCTSSIFC
FT TASFVIFPWTWDTNPSWTDIFWGPHQIVTGDSDFEICIKTSLHSTSTTETGYGRLGIFP
FT LGGPIAPEAHTGAFEFIVYISEWKPDAQVHTPMFASEEIYNWFTLLNLKPDATTGVTNF
FT EIPGYIHDFASKDADVVLASNPLSWLVAATGWHFGEVDLLISWARSKKAAEQEGSLSIT
FT TNHRLATDRWQGQARIFDLRQTSCEISLFLGSFAGATPSALLGNVNYVRLSIVNSKDIL
FT SVRVAIRPKSLKFWGRTATLF"
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SQ Sequence 4010 BP; 905 A; 927 C; 983 G; 1195 T; 0 other;
jq670669 Length: 4010 01-APR-2012 Type: N Check: 8416 ..
1 ttgaaaattc tctcacaggg ttcccgatac gttcttcttt tctcctttct
51 tcctttaatt gttttaaaga ttgcgatttt gaagtttcct actctttggc
101 tcccccattt tcttactgct ccaatggagc ccctcctgtg gcagattgat
151 gccacttctt cgtggaataa tccacttctt ttccccggga ctcgtcccga
201 atgcacccct ctctcacggg tgcaaactgc tctggcattc tttaaggatg
251 ccgcccgtaa attttctaag caggctgatg cctgcgatct gatggcgctc
301 gccatggagc gcgttgctga gcacaacggc tttgccgttc gtgctgataa
351 tgtgcgacag ctgttcaact ttgttggaca gcacgtcgcc aaccccgcag
401 agcggaaggc tctgcgtaag gctttgcgcg aacagcgcga ggccttttgc
451 gcttccctcc caggagcgcc cttccccctt cccccccgga taatccaaat
501 cccgcttagg gacttattgg aaaccaagct ccaaatggag cgtgagttct
551 gtgagtctct tccgggagct cctttccccg agcctaaacc cgaaggctgg
601 ggaattccta cccctccccc tcttcccccc ccatttgtgt ggaaggggtg
651 ccactacaat gtggtggcgc ctcctccact tattcccaaa cctcctcctc
701 caccaacctg gaaggtgatt cccaggccct gttggagggt tgttgcccct
751 ccccctcttg tggtgtacca acctgttggt gcaccatttc ccaggagtcg
801 ttctcaatcg gctcttgctt tctttagagt ggctgctaca tgtcggcagg
851 cacttgtgtg cgagctggtc cgtgagccag ccttcatgac atgctgtgcc
901 tcaactggtg aggtgcagga gatgactgcg atgcttactg aagcgcggtc
951 atctggtaag ttattgacac caaaggaggt gtccagcgcc cttgcgctca
1001 aacgcaagga aataaagggc gctgaagaga atcggatctc ttttgatgaa
1051 ggggtccatc tctcggaaga ggacgtgttt caccgcgtcg gtttgttgaa
1101 gcgcttttcg gcgccaaaat gcgatcgtac gttggtggac gtactgatgc
1151 ctacagaaca tgaagttgtt aggtatccag gaactcgtcc tgatggtggt
1201 ttgcagatgt gcgtgtctgc ccttccgcgc atgtctgagg aagcagctag
1251 aaagttgctt gagaaggggt ggaagaactc aaaaaatgtc tcacttgaca
1301 ttggggttac ttcctatatg ccttatggtg cgcctatcgt tgctttcatg
1351 actattatgg atgggcgcac tgatgatcct gaagaggcag cactatgtgc
1401 taattacatg gaccttggtc gagaaaagtc taaggtgttg tctcttccac
1451 ttgtcacaat cccgctctct gagatagagc acgatgttgg tatattggat
1501 tgcttatata tagtaacata ctttcatggc atccaatctt atcaacccgg
1551 tactcttatg atgagttatg gtactcttga gtttcaggag tattcaaata
1601 actcttttac tactgctacc agagtgcggg aaagttggga gcagattctc
1651 aaacgtaacg agaatcttgg taagcgtgtc catgctggaa ttggcgtgct
1701 tgggacaatt gagaaagaga tggatactca gcttgctgaa tttccagctc
1751 ttaatcttga aactcgtccg cggcctgttg tgcggacttt ccagcaacca
1801 gagcaaactg gtttgaacaa atgccgctct atgaggatcg gagcgaccaa
1851 ttttagtggt attactggcc ggaaaacatt acaaacaatg ccagtggtgc
1901 agcactatga agatccccct cccatacaat ccaaaccacg ccatagcgtg
1951 agtgggcacg gtttcatggc ccctacagta gttcctgacc ggagctgttg
2001 tggggtgttt tcttttaagg tgcccaagga tgccaaaaaa ggtaagcatc
2051 tgcatacaga gagtctagca gatatgatgc gaacctatgg aggcattcat
2101 gttcaagaat ggtggggtag ttgtgcaata aatcctattt ttaaaatccg
2151 aatgcacgcc ccccgcaacg cttttgcagg tctgtccata gcttgtacct
2201 ttgataattt caaaaggata gacgttgcag cactaggtgg ctcttgtcca
2251 cctagtgaga tgtttgagtt tcccactcgt gtattttcat tgaaagacgc
2301 tgacgttcac gagtgggata ttgactatgg ggcattaact ggcaattcct
2351 tgatttgctg ggataatgtg atcacaagcc cgcgattatt attctacgtg
2401 gttaccacta atcaagtggt gatggcggca gattggaatt gtgtggtaac
2451 tgtgcatata gatcgcaccc agcaagttga gtcttttgaa cttgccccca
2501 cggttacttg gccgctgagt gttggggatt cactcagtgt tgatagatat
2551 tatgaggcca aagagcttaa gcttgatggg actaccaaat taatgtatat
2601 agattataat tttggtggtc ctatcaagct cactcaaaag agctcgattt
2651 ctttccctcg tgctgttatg gcacgttata taggatttag cggttctatc
2701 aaaggaagta ttaagtgcac ttctagtatt ttttgcactg cttcctttgt
2751 tatcttcccg tggacttggg atacgaaccc ctcatggaca gatattttct
2801 ggggtccaca tcagattgtt actggagatt ctgattttga aatttgcatt
2851 aaaacaagtc tccatagcac ttccaccact gaaacagggt atggtcgcct
2901 aggaatcttt cccctaggtg gtcccatagc tccagaggcg cacactggtg
2951 cgtttgaatt tattgtctac atcagtgaat ggaagcctga tgcccaagtc
3001 catactccta tgtttgcttc agaggagata tataactggt ttactcttct
3051 caatctgaag ccagatgcca ccactggggt cacaaatttt gagatcccag
3101 gatatataca tgattttgcg tcaaaagatg cggatgttgt actggcctct
3151 aaccctcttt cctggcttgt tgcagctact ggttggcact tcggtgaagt
3201 ggacctgctc atttcatggg cgcgttcaaa gaaagctgca gaacaggagg
3251 gttcgttgtc gatcacaaca aaccatcgtt tggccacaga taggtggcag
3301 gggcaggcgc gtatttttga tttgcgccaa acttcctgtg aaatttcact
3351 ctttcttgga agttttgctg gagctacccc ctcagcactc cttggaaacg
3401 taaattacgt tagattatct atagtaaatt ccaaggatat tttgagtgtt
3451 agagtggcta ttcgacccaa gagtcttaaa ttctggggta gaactgctac
3501 tttgttttag aacgctgtca ttaatttgat ggcttttgtt tgttgagtct
3551 tctaaccagg agcagccctt ctgatctttg ttgattggaa accttgttgt
3601 acttggtggt tagttagacg cgtcaataac cgggatctta attgattccg
3651 tcttagtttc ctggtcctac tggactggtc ctgctcttag gtgagtgggg
3701 aagctgtata aactcagctt ttcgggggtg agagcccgag aatgtctgtc
3751 tgtcagctgc ttgtgtaaat gagctttctc cgaggatagc tctcctcggc
3801 acaagtgaaa acgactaccg tggcacgtta gtagccagac ggtcggggta
3851 aaatccctag ttaacaaaat gtgttaggac gttgtttctg gcagctttgt
3901 tggtcctatt gagttttcta aagctgcttt ggtattttgt gtgtttgagc
3951 ccactgttca tatttggttt ggggccttgt atgtttctta gtgtcgtgtt
4001 tgtccaacac