Sequence of DPV Melon aphid-borne yellows virus
Melon aphid-borne yellows virus isolate MABYV-TW1, complete genome.
ACC No: JQ700307
Dated: 2012-09-03 | Length: 5676 | CRC: -797963081
ID JQ700307; SV 1; linear; genomic RNA; STD; VRL; 5676 BP.
XX
AC JQ700307;
XX
DT 03-SEP-2012 (Rel. 114, Created)
DT 03-SEP-2012 (Rel. 114, Last updated, Version 1)
XX
DE Melon aphid-borne yellows virus isolate MABYV-TW1, complete genome.
XX
KW .
XX
OS Melon aphid-borne yellows virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
XX
RN [1]
RP 1-5676
RA Knierim D., Tsai W.S., Deng T.C., Green S., Kenyon L.;
RT "Full length genome analysis of four polerovirus isolates infecting
RT cucurbits in Taiwan determined from total RNA extracted from field
RT samples";
RL Unpublished.
XX
RN [2]
RP 1-5676
RA Knierim D., Tsai W.S., Deng T.C., Green S., Kenyon L.;
RT ;
RL Submitted (24-FEB-2012) to the INSDC.
RL Virology, AVRDC - The World Vegetable Center, PO Box 42, Shanhua, Tainan
RL 74199, Taiwan
XX
FH Key Location/Qualifiers
FH
FT source 1. .5676
FT /organism="Melon aphid-borne yellows virus"
FT /host="Citrullus lanatus (watermelon)"
FT /isolate="MABYV-TW1"
FT /mol_type="genomic RNA"
FT /country="Taiwan:Yunlin County"
FT /collection_date="Nov-2000"
FT /db_xref="taxon:471717"
FT 5'UTR 1. .20
FT CDS 21. .746
FT /codon_start=1
FT /product="P0"
FT /protein_id="AFM68936.1"
FT /translation="MQIETVKQQLVFRPTRRASTDDRRLSISSFLVDYVFLYQFTRQYG
FT ENFLRLFLARLPLLISEQLSGDYVYTPGVTRRIMVARFHRHCGAPLPSSSAVDLRLPAT
FT KDVARFFLARHYSRVMGEGLQRRQTDLFGGYADFRKFLTVWCSSTSRRLREPTPHAFPI
FT DRIFVELSNLGIGLRGMALTTGVYYRDALARVALHVHRIYGEDGGLDFWRLANFPSKSW
FT PFSSERYLAGSVVQRELQS"
FT CDS join(151. .1482,1482. .3320)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="P1-P2 fusion protein"
FT /protein_id="AFM68938.1"
FT /translation="MVKIFYAFFLLACLCSSVSSYQGTMFTPLESPDASWWLDSTATAV
FT LPSPPQAQLIYDCPPQKMLRDFSSRDIIRELWERGCNDARQTSLEVMQIFENFLLSGAR
FT RLRAGLGSLLHTLFQLIAYLWSSLIWASACAVWHLLREYTIEMLSLASLYMCTVYMVKT
FT AAWIFGDLPIFLLKAGLSAASGISRVLWFKGNYKAEKSVEGFLSFKIPQTPPGKSVLQV
FT QHQDGSHAGYATCVALFNGSTGLITAHHVITPGAKIVSTRNGSKIPASEFQIKLENSKR
FT DLILMTGPPNWEGALACKASQIQTANNLCKSKATFFAWNGEDWESSNAEIVGVSACRNY
FT VSVLSNTNPGHSGTPYFNGKTLLGVHIGGANDENANYLAPIPAVPGLTSPKYVFETTAP
FT QGRLFNDEEIAALIEEFSMSEVASIMRARKGKQVYVEEAAPKQGNRRRGGDRANNRPTL
FT SHPGQRRKQYKRNINNCCSFFTEGTLAPRTIASHEHEPWNDEKPRCFCAIPGHDCFFRN
FT FIGNQERNTGENKPPVNREAGCGSLDEEGNEESRKEATKRQAEDFQRFFDSQYTWEPGS
FT GKEAPGFKQVGRLPEFYHPKQKTGSKWGAKICRQHPEMDAYTQGFGWPQFGAQAELKSL
FT RLQAARWLERAQSVKIPSSEERERVIRKCCEAYKNAKTIGPNATRGDSLSWEGFLEDFK
FT QAVFSLEFDAGIGVPYIAYGRPTHRGWVEDPKLLPILARLTFNRLQKMLEVRFEHLSPA
FT ELVQAGLCDPIRVFVKGEPHKQSKLDEGRYRLIMSVSLIDQLVARVLFQNQNKREITLW
FT RAVPSKPGFGLSTDEQVVEFMEILSAQVGVAPKELIGNWQHHLIATDCSGFDWSVSDWL
FT LEDDMEVRNRLTLDINETTKRLRSAWLKCISNSVLSLSDGTLLSQQVPGVQKSGSYNTS
FT SSNSRIRVMAAYHCGAEWAMAMGDDALESVGSNLAKYAELGFKVEVSSKLEFCSHIFER
FT EDLAIPVNKAKMIYKLIHGYEPECGNAEVLINYLTACFAVLNELRSDPQLVSTLHQWLV
FT LPVQPQKI"
FT CDS 151. .2046
FT /codon_start=1
FT /product="P1"
FT /protein_id="AFM68937.1"
FT /translation="MVKIFYAFFLLACLCSSVSSYQGTMFTPLESPDASWWLDSTATAV
FT LPSPPQAQLIYDCPPQKMLRDFSSRDIIRELWERGCNDARQTSLEVMQIFENFLLSGAR
FT RLRAGLGSLLHTLFQLIAYLWSSLIWASACAVWHLLREYTIEMLSLASLYMCTVYMVKT
FT AAWIFGDLPIFLLKAGLSAASGISRVLWFKGNYKAEKSVEGFLSFKIPQTPPGKSVLQV
FT QHQDGSHAGYATCVALFNGSTGLITAHHVITPGAKIVSTRNGSKIPASEFQIKLENSKR
FT DLILMTGPPNWEGALACKASQIQTANNLCKSKATFFAWNGEDWESSNAEIVGVSACRNY
FT VSVLSNTNPGHSGTPYFNGKTLLGVHIGGANDENANYLAPIPAVPGLTSPKYVFETTAP
FT QGRLFNDEEIAALIEEFSMSEVASIMRARKGKQVYVEEAAPKQGNDDAAATAQTTGPHS
FT ATRGNGESSTKEISTTAAPSSPKEPLPQEPSRATSTNRGMMKSRDVSVQSPDTTASSET
FT LSEIKNAILERINLQSIEKQVVEALTKKATRNRGRRQQKDKPKTSSDSSTPNTHGSREV
FT EKKPLDSNRSAASPSFTTPSRRRGRNGGPRYADSTQKWMPTPRASGGRSSEPRPN"
FT CDS 3516. .5510
FT /codon_start=1
FT /transl_except=(pos:4113. .4115,aa:OTHER)
FT /product="P3-P5 readthrough protein"
FT /protein_id="AFM68941.1"
FT /translation="MNTVAARNQNGMGRRRRNRRRTSKSNRVVVVQTTGQPQRGRRRRR
FT NPRRSPRGGRAGGRPGETFVFSKDNLTGSSSGAITFGPSLSESPAFSSGILKAYHEYKI
FT SMVKLEFISEASSTSSGSISYELDPHCKLNALQSTVNKFGITKSGSRTWSAKLINGLEW
FT HDATEDQFRILYKGNGSSSTAGSFRITIKCQVQNPKXVEGTSPPPAPTPTPPPPAPSPE
FT PTPCKGARFWGYEGNPQSKIQTAENNRNIDSRPLNYVSMYRWEDEKWDQVNLQAGYSRN
FT DRRCMETYFVIPANKGKFHVYLEADGEFVVKHIGGDLDGSWLGNIAYDVSQRGWNIGNY
FT KGCSIKNYQSKTTFVAGHPDASMNGKNFDAARAVEVDWFASFELECDDDEGSWRIYPPP
FT IQKDSSYNYTVSYGNYTEKYCEWGAVSISIDEDNATGRVPQRIKPRKGVMTWSTPEPER
FT QPAEQTPVQEPSETSGLDAPPTTKQEDETTDDLGGKFKEPQIPEFSTPMHMLARDLGGL
FT TESSSRAPEGVASWVQLEADPVNESEYSSDNETIASPPTTTVSSPFTSIPNTERVLQMP
FT GVYQGDRQIASSVLDEHRKRSFAKRLLPSLGGSRASALSGGTLRQKHSDLIKQYMTAAE
FT HAEAQRIRNQLGKGAQTRYIESLNLHDRV"
FT CDS 3516. .4115
FT /codon_start=1
FT /product="P3"
FT /protein_id="AFM68939.1"
FT /translation="MNTVAARNQNGMGRRRRNRRRTSKSNRVVVVQTTGQPQRGRRRRR
FT NPRRSPRGGRAGGRPGETFVFSKDNLTGSSSGAITFGPSLSESPAFSSGILKAYHEYKI
FT SMVKLEFISEASSTSSGSISYELDPHCKLNALQSTVNKFGITKSGSRTWSAKLINGLEW
FT HDATEDQFRILYKGNGSSSTAGSFRITIKCQVQNPK"
FT CDS 3544. .4119
FT /codon_start=1
FT /product="P4"
FT /protein_id="AFM68940.1"
FT /translation="MAWEGGDGTVDALQRVTAWLWSKPLANHNAEDDDDEIQDVLLEEA
FT ELEDAQVKHLYSAKTISRAVPPEQSLSGRLYQRAQHSALEYSRPTMSIKSQWSSWSSSP
FT RPLPPPQVPSLMSWTPTASLTPSNPRLINSESRRVDLEHGARSSLTGWNGTTPRKINSA
FT SYTKETGALQRRDRSGSPSSARSRTRNR"
FT 3'UTR 5511. .5676
XX
SQ Sequence 5676 BP; 1570 A; 1436 C; 1431 G; 1239 T; 0 other;
jq700307 Length: 5676 03-SEP-2012 Type: N Check: 588 ..
1 acaaaagata caagcggggg atgcaaattg agactgtaaa acaacaactt
51 gttttcagac caacccgtcg agcaagcaca gacgatcgca gactatcaat
101 atcttcattt ttagtcgatt acgtcttttt gtatcaattc acaaggcaat
151 atggtgaaaa ttttctacgc ctttttcttg ctcgcttgcc tctgctcatc
201 agtgagcagc tatcagggga ctatgtttac acccctggag tcaccagacg
251 catcatggtg gctcgattcc accgccactg cggtgctccc ctcccctcct
301 caagcgcagt tgatttacga ctgcccgcca caaaagatgt tgcgcgattt
351 ttcctcgcgc gacattattc gagagttatg ggagaggggc tgcaacgacg
401 ccagacagac ctctttggag gttatgcaga ttttcgaaaa tttcttactg
451 tctggtgctc gtcgacttcg cgcaggctta gggagcctac tccacacgct
501 tttccaattg atcgcatatt tgtggagctc tctaatctgg gcatcggcct
551 gcgcggtatg gcacttacta cgggagtata ctatcgagat gctctcgctc
601 gcgtcgctct acatgtgcac cgtatatatg gtgaagacgg cggcttggat
651 ttttggcgac ttgccaattt tccttctaaa agctggcctt tcagcagcga
701 gcggtatctc gcgggttctg tggttcaaag ggaattacaa agctgagaaa
751 tccgtggaag gatttctctc attcaaaatc ccacaaaccc ctcccggtaa
801 aagcgtgttg caagtgcagc accaggatgg atctcacgca ggttatgcaa
851 cctgcgttgc acttttcaat ggatcaacag ggctcataac agcccaccat
901 gtgatcactc ctggcgctaa aatagtctcc actcggaatg gctctaagat
951 cccagcctcc gagtttcaaa ttaaattaga aaattccaag agagacttga
1001 tactgatgac cggcccacca aattgggagg gggccttggc ttgcaaagcg
1051 tcacaaatcc agactgctaa taatttgtgc aagtccaagg cgaccttttt
1101 cgcctggaat ggtgaagatt gggagtcatc aaatgctgaa attgtcgggg
1151 tttcagcgtg tagaaattat gtatcagtgc ttagcaacac gaatcccggc
1201 cacagcggca ccccatactt caatggaaaa acattgttgg gtgtccacat
1251 tgggggcgca aatgatgaaa atgccaacta tttagccccc atccctgctg
1301 tgcctggtct cacgtcaccg aaatacgttt tcgagaccac agcaccccaa
1351 ggccgcttgt ttaacgatga agaaattgcg gcgttaatag aggagttcag
1401 catgtctgag gtcgcctcaa tcatgagggc ccggaaaggt aagcaagtat
1451 atgttgaaga agctgctcct aagcagggaa acgacgacgc ggcggcgacc
1501 gcgcaaacaa ccggcccaca ctcagccacc cggggcaacg gagaaagcag
1551 tacaaaagaa atatcaacaa ctgctgctcc ttcttcaccg aaggaaccct
1601 tgccccaaga accatcgcga gccacgagca cgaaccgtgg aatgatgaaa
1651 agccgcgatg tttctgtgca atccccggac acgactgctt cttccgaaac
1701 tttatcggaa atcaagaacg caatactgga gagaataaac ctccagtcaa
1751 tagagaagca ggttgtggaa gccttgacga agaaggcaac gaggaatcga
1801 ggaaggaggc aacaaaaaga caagccgaag acttccagcg attcttcgac
1851 tcccaataca catgggagcc gggaagtgga aaagaagccc ctggattcaa
1901 acaggtcggc cgcctccccg agttttacca ccccaagcag aagacggggt
1951 cgaaatgggg ggccaagata tgccgacagc acccagaaat ggatgcctac
2001 acccagggct tcgggtggcc gcagttcgga gcccaggccg aactgaaatc
2051 cttgcggcta caggccgcca ggtggctgga gcgcgcccag tctgttaaaa
2101 tcccctcgtc tgaggagcgg gagcgcgtga tcaggaaatg ctgtgaggcc
2151 tacaaaaatg ccaaaactat agggcccaac gcaacaagag gagacagctt
2201 atcctgggaa ggattccttg aagattttaa gcaagctgtc ttctcgctcg
2251 aatttgatgc aggcatcggc gtaccataca ttgcttatgg aaggccaacc
2301 caccgagggt gggttgaaga tccaaaatta ttgccgatct tagctcgcct
2351 gacctttaac cggctacaga agatgttaga ggttaggttc gagcatctaa
2401 gccctgcgga gcttgtgcag gcgggtctct gtgacccgat acgtgtgttt
2451 gttaaaggtg aaccgcacaa gcagagtaaa ttagatgaag gccgctaccg
2501 cctcatcatg agcgtttcct tgatagatca attggtagcc cgggttttat
2551 tccagaatca gaataaaaga gaaatcactc tgtggagggc agtaccctct
2601 aaacccggtt ttggcttgtc tacggatgag caagtcgtgg agttcatgga
2651 aatactctcc gcgcaggtgg gggttgcacc caaagaatta ataggcaatt
2701 ggcaacacca ccttattgcg actgactgct ccggctttga ctggagcgtt
2751 tcggactggc tccttgaaga tgatatggaa gtccgaaacc gcctgacgct
2801 ggacattaat gagaccacca agcgcttaag atcagcttgg ttgaagtgca
2851 tctcgaatag cgtcctcagc ctctccgatg ggaccctcct gtcacaacag
2901 gtccccggag tacagaaatc tggcagctat aacacctcat cctccaattc
2951 taggattcga gtgatggctg catatcattg cggggctgag tgggcaatgg
3001 cgatgggcga tgacgccctt gagtcagtcg gatcaaacct agcgaaatac
3051 gctgagctag gttttaaagt cgaggtttcc tcaaaactgg aattctgctc
3101 acatatcttt gaacgtgagg acctcgccat tccggtcaat aaagccaaaa
3151 tgatatataa gttgatacat ggctatgagc cggaatgtgg caatgctgag
3201 gtcttgatta actatctgac cgcctgtttc gcagttctca acgaattgcg
3251 gtcagatcct cagcttgtct cgactctcca tcagtggctg gttcttccag
3301 tgcagccaca aaagatataa ggggagtata aagaacacta gccggaaata
3351 cgttgttgca attgccggaa gtttaagcca actacaaaat aggccaagcg
3401 gatttcagat tcgtagcagg attcacatcg ggcttcctgg cagctatacc
3451 actttgcgca ctaggcctat acttaatcta cctaaagatt tcagcccacg
3501 ttcgatcaat tgttaatgaa tacggtcgcg gctagaaatc aaaatggcat
3551 gggaaggagg agacggaacc gtcgacgcac ttcaaagagt aaccgcgtgg
3601 ttgtggtcca aaccactggc caaccacaac gcggaagacg acgacgacga
3651 aatccaagac gttctcctcg aggaggcaga gctggaggac gcccaggtga
3701 aacatttgta ttcagcaaag acaatctcac gggcagttcc tccggagcaa
3751 tcactttcgg gccgtctcta tcagagagcc cagcattcag ctctggaata
3801 ctcaaggcct accatgagta taaaatctca atggtcaagt tggagttcat
3851 ctccgaggcc tcttccacct cctcaggttc catctcttat gagttggacc
3901 cccactgcaa gcttaacgcc ctccaatcca cggttaataa attcggaatc
3951 acgaagagtg gatctagaac atggagcgcg aagctcatta acgggctgga
4001 atggcacgac gccacggaag atcaattccg catcctatac aaaggaaacg
4051 ggagctcttc aacggcggga tcgttcagga tcaccatcaa gtgccaggtc
4101 cagaacccga aataggtaga aggcacctcc ccccccccag caccaacacc
4151 aacccccccc ccaccggccc cctcacccga gcccacacct tgtaaaggcg
4201 ctcgtttctg gggctatgag ggcaacccac aaagcaagat acaaacggca
4251 gaaaataata gaaacatcga ttcaaggccg ttgaattatg tatccatgta
4301 ccggtgggaa gatgagaaat gggatcaagt taatctgcaa gctggctact
4351 caagaaatga cagacgttgt atggaaacat acttcgtgat accggcgaac
4401 aagggaaagt ttcacgtgta ccttgaggcc gatggagaat tcgtcgtaaa
4451 acacataggc ggcgatctcg atggtagctg gcttggaaac atcgcgtatg
4501 atgtatccca gcgaggttgg aatattggga attacaaagg ttgcagcata
4551 aagaactatc agtcgaaaac gacctttgta gctggacacc ctgacgcatc
4601 catgaatgga aagaactttg atgcggctag ggcagtggaa gttgattggt
4651 tcgcctcatt tgaactagaa tgtgatgatg acgaaggcag ttggaggatc
4701 tatcctcccc ccatacagaa ggacagttcg tataattaca ctgtctcgta
4751 cggaaactac acagagaaat actgtgaatg gggagccgtt tccatctcta
4801 ttgatgagga caacgccaca gggagggtgc cacaaagaat taaaccacgt
4851 aagggggtaa tgacgtggtc aacgcccgag ccggaaagac aaccggctga
4901 acaaactccg gttcaagaac cgtccgagac atctgggctc gatgccccgc
4951 ctacgacaaa acaagaagac gaaacaaccg acgatctagg cgggaagttt
5001 aaagaacccc aaattcctga gttttcgacg ccaatgcata tgctagcgcg
5051 ggatttgggc gggctaacgg aatcttcttc cagagcgccc gagggagtgg
5101 ccagctgggt ccagctagaa gcggatccag taaatgaaag tgaatattcc
5151 tcagataatg agacgatcgc gagccctccc actacaaccg tttcctctcc
5201 cttcacttca attccgaaca cggaaagggt gcttcaaatg cccggagtgt
5251 accaaggtga tcgacagatc gcctcaagcg tgttagatga acaccgcaaa
5301 aggtccttcg caaagcgcct cctcccaagc ttgggaggat ctagagcttc
5351 agcccttagt ggagggactc tccgccaaaa gcattcagat ttgattaagc
5401 aatatatgac ggcggcagag catgcggaag cgcagaggat ccggaatcaa
5451 ctcggtaaag gtgctcaaac tcgatacatt gagtctttaa acttgcacga
5501 ccgagtgtaa agaaccgctt tgtggagacg cgcgtgactc cacccggcta
5551 caggcgcccg accaaagacc tgatgacatc aagccaaaga tgtaaaactg
5601 gaacgactcc gaaaggatag gcaacgaatg ttctcactct tgtgagtaca
5651 gggggactcc cctggcattt cggtgt