Sequence of DPV CAS virus
CAS virus isolate ATB segment L, complete sequence.
ACC No: JQ717261
Dated: 2012-10-07 | Length: 6812 | CRC: -1692646862
ID JQ717261; SV 1; linear; genomic RNA; STD; VRL; 6812 BP.
XX
AC JQ717261;
XX
DT 21-AUG-2012 (Rel. 113, Created)
DT 07-OCT-2012 (Rel. 114, Last updated, Version 2)
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DE CAS virus isolate ATB segment L, complete sequence.
XX
KW .
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OS CAS virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae;
OC unclassified Arenaviridae.
XX
RN [1]
RC Publication Status: Online-Only
RP 1-6812
RX PUBMED; 22893382.
RA Stenglein M.D., Sanders C., Kistler A.L., Ruby J.G., Franco J.Y.,
RA Reavill D.R., Dunker F., Derisi J.L.;
RT "Identification, characterization, and in vitro culture of highly divergent
RT arenaviruses from boa constrictors and annulated tree boas: candidate
RT etiological agents for snake inclusion body disease";
RL MBio 3(4):e00180-12(2012).
XX
RN [2]
RP 1-6812
RA Stenglein M.D., Franco J.Y., Kistler A.L., Sanders C., Reavill D.,
RA Dunker F., DeRisi J.L.;
RT ;
RL Submitted (28-FEB-2012) to the INSDC.
RL Department of Biochemistry, University of California, San Francisco, Byers
RL Hall, Rm s403c, 1700 4th St, San Francisco, CA 94158-2330, USA
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CC GenBank Accession Numbers JQ717261, JQ717262 represent sequences
CC from the 2 segments of CAS virus isolate ATB.
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FH Key Location/Qualifiers
FH
FT source 1. .6812
FT /organism="CAS virus"
FT /segment="L"
FT /host="Corallus annulatus"
FT /isolate="ATB"
FT /mol_type="genomic RNA"
FT /country="USA:California"
FT /collection_date="08-Jul-2009"
FT /db_xref="taxon:1223561"
FT gene 76. .423
FT /gene="Z"
FT CDS 76. .423
FT /codon_start=1
FT /gene="Z"
FT /product="Z protein"
FT /protein_id="AFP93549.1"
FT /translation="MSMCINGTNSIGISNEVVLSLTLISSLTTLILLIINTITMFGLKA
FT LTLKKRLSFCTACGKNSSLVKLPCKHKCCIQCPLANLKCPICYEPCLWCEKADGSLESL
FT SLMKKNLQELP"
FT gene complement(516. .6656)
FT /gene="L"
FT CDS complement(516. .6656)
FT /codon_start=1
FT /gene="L"
FT /product="L protein"
FT /note="L polymerase"
FT /protein_id="AFP93550.1"
FT /translation="MDPDTNLLKNVILEILSIEPDLYKQSSIVDDPYKLAMSAIRLRAT
FT IHELNCCRDLGIIHNTKEISLNMVIDRAIPIHPTFQHIVPDGYTIDRANMTIIVLEAST
FT RSMPSDQKRKITSDKLKYSGVEDHLKHEGWLFNIIVISETKPRNGNVPERLLFELLKLS
FT LSILSYSDKSSQWISEEEYDELKRSLTTYDFKTLTSEFSGTKLYTDLDEPSETLDADIL
FT SWLASLETQNKLPFNTAWDGPQITKLIHKWRDIELQPKDYKPLRLMRLMSSATTGLNLP
FT TKHLSLLNKLKSLNLLNSRRHQNILYDYMAFMSLPEMNDYPSGWFPSVNDRLVSVKSID
FT SNFRQLEKLKKRLMISMFKLQASTPKGYIHDLLKDAIEMVKSCKIVKPNFKMRNRGPVP
FT EPFINYKIAREREGKTKDYNNIDKQRIEDCALNLLLSQKTKSCPRSSNETEYFFQSRKG
FT QLLIYKASGEGQKAFSLLVETQVAKNHHVNIFLSFNINPSRLFPLIFSSESINAVLRQY
FT KDLLTFIDTPIADITDNVIKSQQAINPFLTSNIMTEELAKQTLHKLKVLIYGVLTNPTK
FT RLQVELQSQRYYIMDALSLIHHKDLVSKVVGNCITTDEYFLRSLAHDLINTVLSCGNMS
FT LFLKVTWCLNISYLCHLITKESPDRLNDMRDCFEKFMKPKIEFMSNPIINSKNVDELID
FT KFEDESERFFLNAPTIEVKPSVYKPVMSDFLRWVKMNKFNGQNGEPLLSDENVLSSSVD
FT VLDLTSNKSTFKRTKNGEIESALDVLYNPKLIIKRIICEKLHKNTVKSSSIKERNKGIT
FT TEKSTIIVKLEELSSTIERIIGDEGLLDELEYGEFLLQMLDVADEIKEEITNKAGVPDE
FT KELTNYEIVLETISSIVGTESKNLIKSTCMSTKLSDLTSDILSEDCMKEIIESVITRLP
FT SSFPRDAELVSLDNVSAGLVVARLQEGDIFSSFKFLLLWAGFNNFQGTYTHHSGPQSSI
FT LKLSDKYRKKMMISSRVTNSESIQERLLNVSFGAPTLRNILFSTLDMDIKNSEIGPNNK
FT LLQFGLSFKEQVGGPRELYVGDSDTKLITRVLEESSRNLGSLLENSCLSSEKKFDSFMK
FT EISRAFYNGYIILSMDHSKWGPYNSPIQYHMLYEALEEIRGANGKKLNLAFAKTILKWH
FT LFKAVEVPVTIIEDIYQTMTDISLNNRERRPDKERSYETYFINQLKTKKIKTHDNKVPS
FT QIHSYFDMGQGILHYTSDLYGSLASEYICNKVNELFNIKLISMNTSDDMVVIVKRMFRA
FT KHINSIREEMMYLMNYIYALSNFLNKHVSPKYCCSPLVGEFKSHFEVEGKVVPLFIKFF
FT SACIGNFRCKNPTELFNTCDTIVEQGVCNGLSLTVADCLKKRMVNMLDWLGYSSDPQMH
FT PHTSRQQDWLMGCLSYRKLRSLETWLLENGVEELTLDVVRGKLYEVIQSLRMRMIAPIV
FT ALEKMRDVVRTHLGKIDIWFPTLWGGFRLIVRSKLNLGQTLVESCENPLVKKLMNHYSR
FT FTKQGLGLLISEGLERSAFQSSVVTGFIGLSISLSGPCVKSENGNFIPIHQSKQITKEV
FT CEVYTTLLMDSVCSIGDWVCGEDRQLNKFQPHGVYVRTSLINTPTFNYGLDELTATLEL
FT TSPELFDKFLATLVPIDKRLNLRTNWSVRPEMELLVECSKLGMSVFDGKFDRKEESVML
FT TEYFKLEHLVTRSLPLQKTHKSGTAVQELNRICDGMILSSILRPQMVEPSLIGDVLKTE
FT PFTSSLEVLKDIKVSGLMRYIKQVLLGRKSYYKFGEEHADGDQNLFDYQFTGTPEEPIK
FT GYWTTTISYRDSKPKISLTIRQEFVEGGVESQAVLATVVGRPHLQDFLLLKRKHLEYSD
FT YPESIDLIEFGDVKVIEKTVGHGQPVVLYMASLFPIGLTKIAEQGIGCHNEKNDATLKS
FT LLKTAILNMTPDDVSLLPRSKLDAIDHVVRNVYLRFNNSSAVSYGLHKLQSFEKILQLN
FT GRIYETKESTLVFHHKKGVLVEDLKGLMSYKTLRVSEWREKQEPEEARVEVLEE"
XX
SQ Sequence 6812 BP; 1879 A; 1436 C; 1194 G; 2303 T; 0 other;
jq717261 Length: 6812 07-OCT-2012 Type: N Check: 5156 ..
1 cgcactgggg atccgcgttt cagtataaat cttccaaggt tctactgaag
51 ttctacatct ctaagtgcaa agccaatgag tatgtgcatc aacggcacaa
101 acagcattgg tatctccaac gaggttgtcc tctccctaac tctcatctcc
151 agtctcacca ccctgatact cctaatcata aacaccatca caatgtttgg
201 tctaaaggcc ctcacattga agaagagact cagtttctgc actgcctgtg
251 gcaagaactc aagtctggtc aaactaccat gcaagcacaa atgctgcatt
301 cagtgtcctc ttgctaatct gaaatgtccc atctgctatg agccttgttt
351 gtggtgcgaa aaagctgatg gctcacttga gtctctctca ctgatgaaga
401 agaacctgca agaactcccc taagaccaac cacagcacgc agcgcccggc
451 ggacgggtcg ggcgtgcgcc tgtgcctgct cttgccgtgt ctgcggctgg
501 ggctgtcctg gggacctact cctccagcac ttcaactctg gcctcctcgg
551 gctcctgctt ctctctccac tcagaaaccc taagagtttt atatgacatc
601 aaccccttta gatcctcaac aagtacacct ttcttatggt gaaacactaa
651 agttgattcc tttgtctcat agattctccc attcaattgt aagatctttt
701 caaacgattg cagtttgtgg agaccataac tgacagcact tgaattatta
751 aaccttaggt aaacatttct aacaacatgg tctatggcat ccaatttaga
801 tctcggtaga agtgacacat catccggtgt catgttcaga attgcagttt
851 taaggaggct tttaagagtt gcatcattct tctcattatg gcacccaatg
901 ccctgttctg caattttggt taaaccaatt ggaaatagtg atgccatgta
951 caacacgaca ggctgaccgt gcccaactgt cttttcaatc actttaacat
1001 cgccaaactc aattagatca atcgactcag gataatcaga atattctaag
1051 tgttttctct tcagtagtag aaagtcttga agatgaggcc tacctaccac
1101 agtggctaac actgcctgtg actccacacc cccttccaca aactcttgcc
1151 tgatggtcaa agaaatcttt ggttttgaat ccctatagga aatagttgta
1201 gtccagtatc ctttaattgg ttcttcagga gttcctgtaa actgataatc
1251 aaaaaggttc tgatcaccat cagcatgttc ctcaccaaat ttgtagtatg
1301 attttctgcc aagcagcact tgcttaatat atctcatcaa tccactaacc
1351 ttgatatcct ttagtacctc tagactactg gtaaatggtt cagtcttcaa
1401 cacatcacca attaaagatg gctctaccat ttgtggtctg agtattgaag
1451 ataatatcat cccatcacaa attctgttta gttcttgtac tgcagtacca
1501 gatttgtgag ttttttgaag tggtaatgat ctagtaacta ggtgttctaa
1551 tttaaaatac tcagtcagca ttacagattc ttccttccta tcaaacttac
1601 catcaaaaac agacatccct aactttgaac actcaacaag cagctccatt
1651 tcgggtctta cagaccaatt tgttctcagg ttgagccttt tgtcaattgg
1701 cacaagtgtg gctagaaact tgtcaaacaa ctctggtgat gttagctcca
1751 atgttgcagt taattcatcc aatccatagt tgaaagttgg tgtgtttata
1801 agacttgttc taacatacac accatgtggt tggaatttgt tcaactgtct
1851 gtcctcacca caaacccaat caccaataga acaaacagag tccattagta
1901 aggttgtata aacttcacaa acctcttttg tgatctgttt tgattggtga
1951 attggaatga aattcccatt ttctgacttc acacaaggcc cagataaact
2001 aattgacaag cctataaacc ctgtcacaac tgaactctga aatgctgatc
2051 tttccaaacc ttcgctgatt aagagtccca gaccttgctt agtgaatcgt
2101 gagtagtgat tcatcagttt tttgactaat ggattctcac agctttctac
2151 aagagtctga ccaagattta acttgcttct tacaatgagt cggaaaccac
2201 cccacagagt tggaaaccat atatctattt tacccagatg tgtccttacc
2251 acatctctca ttttctcaag tgctactatt ggtgcaatca ttctcatcct
2301 aaggctttgg attacctcat aaagcttacc cctgacaaca tcaagagtca
2351 actcctcaac accattctcc aacagccaag tttctaatga cctcagtttt
2401 ctataactca agcagcccat caaccaatct tgttgtcgac tggtgtgtgg
2451 gtgcatttga gggtcagaac tataacccag ccaatctaac atattgacca
2501 ttctcttttt gagacagtct gcaactgtca atgacaaacc attacaaact
2551 ccttgttcaa caattgtgtc acaagtatta aatagttctg taggattttt
2601 acatctaaag tttcctatac aagctgagaa aaacttaata aatagaggaa
2651 caactttacc ttcaacctca aagtgtgact tgaattcacc tacaagaggg
2701 ctacaacaat actttggtga aacatgtttg tttaggaagt ttgacagtgc
2751 atatatataa ttcattagat acatcatttc ttctctaatg ctatttatgt
2801 gttttgctct aaacattctt tttacaatca ctaccatgtc atctgatgtg
2851 ttcatggaga ttaatttaat gttgaagagt tcattgactt tgttacaaat
2901 atattctgag gccaatgagc cataaagatc agatgtatag tgtaatatcc
2951 cttgtcccat gtcaaaataa ctgtgtattt gagaaggcac cttattgtca
3001 tgtgtcttta ttttctttgt tttcaactgg tttatgaaat aggtttcata
3051 gcttctttcc ttgtcaggtc gcctttcacg attgtttaaa ctaatatctg
3101 tcattgtttg ataaatgtct tcaattattg tcacaggtac ttcaacagcc
3151 ttaaataggt gccacttgag aattgttttt gcaaaggcca aattcaactt
3201 tttcccatta gctcctctta tttcttcaag tgcctcatac aacatatggt
3251 actgaattgg actattgtaa ggcccccatt ttgaatgatc catacttagt
3301 atgatataac cattatagaa ggctctactt atctctttca taaaactgtc
3351 aaacttcttc tcagaagaca aacagctatt ctccagcaaa gagcccaaat
3401 tccttgacga ttcttcaagc actctagtga tcagttttgt gtctgagtca
3451 ccaacataaa gttctcttgg ccctccgact tgttccttaa atgatagtcc
3501 aaattggagc aatttgttgt taggccctat ttcagagttc tttatatcca
3551 tatctaatgt cgaaaacaga atgtttctca gtgttggtgc accaaaacta
3601 acatttaaca accgttcttg aattgactct gaatttgtga ctctacttga
3651 aatcatcatc ttttttctgt acttgtctga taattttaga atggaacttt
3701 ggggaccaga atggtgtgtg tatgtccctt gaaaattgtt gaatcccgcc
3751 cataaaagaa gaaatttgaa acttgagaaa atgtcacctt cctgtaatct
3801 agcaactact aaacctgctg aaacattatc taaagacact aattcagcat
3851 cccttgggaa agatgagggt aatctggtta tgactgattc aatgatctcc
3901 ttcatgcagt cttctgacaa aatgtcactt gtcaagtctg atagttttgt
3951 tgacatgcat gttgacttga taaggttctt ggactcagta cctacaatag
4001 aactaatagt ttcaagaaca atttcataat tagttagttc tttctcatct
4051 gggaccccag ccttgtttgt gatttcttct ttgatctcat cagcaacatc
4101 cagcatttgc aacaaaaatt caccatactc cagttcatct agcaacccct
4151 catccccgat gattctttca attgttgagc taagttcttc aagcttgaca
4201 attattgtag acttctctgt ggtgatacct ttattccttt ctttgatgga
4251 actggatttc actgtgtttt tgtgtaactt ctcacaaatt atgcgtttta
4301 taattaattt tgggttgtat aaaacatcaa gtgcactctc aatttcacca
4351 ttttttgtcc ttttaaaggt gcttttgtta gatgtgagat ccaatacatc
4401 aaccgaggac gacaaaacat tctcatcaga cagaagtggt tcaccatttt
4451 gtccattaaa cttgttcatt ttaacccacc gcaagaagtc gctcatgact
4501 ggcttgtaaa ctgatggctt tacttcaata gtgggtgcat ttaaaaagaa
4551 tctttctgac tcatcctcaa acttgtctat taattcatca acattttttg
4601 aattaataat gggatttgac atgaactcaa ttttgggttt catgaacttc
4651 tcaaagcagt ctcgcatgtc atttaatcta tcaggtgatt cttttgtaat
4701 caagtgacaa aggtaggata tattcaaaca ccaagtgact tttaaaaaca
4751 aactcatgtt tccacagctt aatacagtat tgattaagtc atgtgcaagg
4801 cttcttagaa agtactcatc tgttgtgata caattaccaa caactttact
4851 gaccaggtcc ttatggtgta ttagtgataa ggcatccatt atataatatc
4901 tttgtgactg taactctact tgtagtcttt tagttggatt tgtcaacact
4951 ccataaatca atacctttaa cttatgcaat gtttgttttg ctagctcttc
5001 cgtcataatg tttgatgtaa gaaatgggtt aatagcttgt tgactcttaa
5051 ttacattgtc tgttatatca gcaatcggtg tgtcaataaa tgttaataaa
5101 tctttgtatt gtctgagtac ggcattgata ctctcactgg agaatatcag
5151 tggaaacagt ctagatggat taatattaaa ggataaaaat atatttacgt
5201 gatgattctt agcaacctgg gtttccacaa gcaaactgaa tgccttttga
5251 ccttcaccag aagctttgta gatcaatagc tgtccttttc tgctttggaa
5301 gaaatattca gtctcattac ttgacctagg acaactcttt gttttttgag
5351 ataacagaag atttaaagca caatcttcta ttctttgctt gtctatgttg
5401 ttatagtcct ttgtttttcc ctctcgttct cgggcaatct tgtagtttat
5451 gaatggctca gggactggac ctctgttcct catcttaaaa ttgggtttta
5501 caattttaca tgacttcacc atttcaatgg catctttgag taaatcgtgt
5551 atgtagcctt ttggtgtgga agcttgtagt ttgaacattg agatcatcaa
5601 tcgtttcttt agcttttcca attgtctaaa attggagtca atagatttga
5651 cactcactag tctgtcattc acacttggaa accagccact tgggtaatca
5701 ttcatttctg gtagactcat gaacgccata taatcataga gaatgttttg
5751 atgtcttctt gagtttaata agtttaaaga tttaagttta ttgagcaaac
5801 tcaaatgttt agttggaagg tttagacctg ttgttgcaga gctcattaat
5851 ctcatgagcc tcaagggctt gtaatcttta ggctggagct ctatgtctct
5901 ccacttatga attagctttg ttatctgtgg cccatcccat gctgtattga
5951 agggtaattt attttgtgtt tctaaacttg caagccatga gagaatatcg
6001 gcgtctagtg tctcagaggg ttcatccaag tctgtgtaca actttgtgcc
6051 actaaactct gatgttaaag ttttaaaatc ataagttgtt aatgatcttt
6101 ttaactcatc atattcttct tcactaatcc attgggatga tttgtcagaa
6151 tatgacaaga ttgataatga caattttagt aactcaaaaa gtagtcgctc
6201 tggcacattg ccgtttctgg gttttgtttc tgaaataaca atgatgttga
6251 aaagccaacc ttcatgcttt agatgatctt ctacaccact atacttgagc
6301 ttgtctgatg taatcttcct tttttggtcg gatggcattg accgtgtgct
6351 ggcttctagt acaattatag tcatgttggc tctatcaata gtgtacccat
6401 caggtacaat gtgttggaat gttgggtgaa ttggaattgc tctgtcgatt
6451 accatattca gtgatatttc tttcgtgttg tgaataattc ctaggtctct
6501 gcagcagtta agttcatgga tggttgctct taatctgatt gcactcatgg
6551 ctaacttgta ggggtcatcc actattgatg actgtttgta aaggtcaggt
6601 tcaatgctta gaatctcaag aatgacgttt tttaggaggt tggtgtccgg
6651 gtccattgcc ctcgtggctg gtctgggctc tgccgctccc tccgtgcgtg
6701 cccgctgtct cccgctcagt gtctggctct ctccggtgcc ccaccctcca
6751 agtgtgtgtc tttcggtatt tactcatgta aaagtatcta aataacgcgg
6801 atcctcagtg cg