Sequence of DPV CAS virus
CAS virus isolate ATB segment S, complete sequence.
ACC No: JQ717262
Dated: 2012-10-07 | Length: 3368 | CRC: 1887641678
ID JQ717262; SV 1; linear; genomic RNA; STD; VRL; 3368 BP.
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AC JQ717262;
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DT 21-AUG-2012 (Rel. 113, Created)
DT 07-OCT-2012 (Rel. 114, Last updated, Version 2)
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DE CAS virus isolate ATB segment S, complete sequence.
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KW .
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OS CAS virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae;
OC unclassified Arenaviridae.
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RN [1]
RC Publication Status: Online-Only
RP 1-3368
RX PUBMED; 22893382.
RA Stenglein M.D., Sanders C., Kistler A.L., Ruby J.G., Franco J.Y.,
RA Reavill D.R., Dunker F., Derisi J.L.;
RT "Identification, characterization, and in vitro culture of highly divergent
RT arenaviruses from boa constrictors and annulated tree boas: candidate
RT etiological agents for snake inclusion body disease";
RL MBio 3(4):e00180-12(2012).
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RN [2]
RP 1-3368
RA Stenglein M.D., Franco J.Y., Kistler A.L., Sanders C., Reavill D.,
RA Dunker F., DeRisi J.L.;
RT ;
RL Submitted (28-FEB-2012) to the INSDC.
RL Department of Biochemistry, University of California, San Francisco, Byers
RL Hall, Rm s403c, 1700 4th St, San Francisco, CA 94158-2330, USA
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CC GenBank Accession Numbers JQ717261, JQ717262 represent sequences
CC from the 2 segments of CAS virus isolate ATB.
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FH Key Location/Qualifiers
FH
FT source 1. .3368
FT /organism="CAS virus"
FT /segment="S"
FT /host="Corallus annulatus"
FT /isolate="ATB"
FT /mol_type="genomic RNA"
FT /country="USA:California"
FT /collection_date="08-Jul-2009"
FT /db_xref="taxon:1223561"
FT gene 53. .1234
FT /gene="GPC"
FT CDS 53. .1234
FT /codon_start=1
FT /gene="GPC"
FT /product="glycoprotein"
FT /note="GPC protein"
FT /protein_id="AFP93551.1"
FT /translation="MHYPWLHSRGRTKCEAHTAKALIIILLTANCKALIAEMLQAAAGN
FT DSSICHGMMFTEPVGSFLGINPNTTDDPFELHALSLNQNVTDKIMIFQNGLKLFGSETR
FT NYSITSGPGLLVGFFGHSRSGVYKNLTFTNNTTFKICVSCKSRFNITLVVYNKFTKKAS
FT TTICPDEFVRKKRSDVIVSYNLTCVILHNKNMITHHKTALNAEFSPRGLQQLSTKNDVE
FT PGCDSNVGIFGHSSGTDAGWGIAGFFTLGITNSLQISEIEHVTDAIACKIIKTANYTTN
FT ALFLLNKEESEIRDHVVEHELALNYLLAHQGGLCNVVKGPMCCSDIDDFSKNVSDMIDK
FT VHEEMKKFYHEPDPFGGLGSIGFFGTLFGHILQWIPIILLTIFMCFICSWVKK"
FT gene complement(1423. .3177)
FT /gene="NP"
FT CDS complement(1423. .3177)
FT /codon_start=1
FT /gene="NP"
FT /product="nucleoprotein"
FT /note="NP protein"
FT /protein_id="AFP93552.1"
FT /translation="MNQLVVKKHLNKVLRPFQANLNNDLFKDVKLISAKININEVNDVL
FT RRLRKETKTRDDLQKLRKLNKYLAEGTNVTSEQVVVEIDSTQMSDEDLMQCIDNLERIK
FT KKAEYKGGRDKPSSKFEFETGLSHEDHERFSSLFASFVPQKPNPRNENNKPKSWIGVSS
FT EELANQFGTSPSITVSIMLQRSGCTFKELFEALNDISLLDAGMFVNASVIKALSSKHHC
FT LDVVEFSVPKNSSGYNITVKSVVKAANSISSHPKLEKIMVTDQNRTKLLSVLVAAQKDL
FT QLEIKLDEERTLFEDLFYKVCVSPNGACVVSIRSNLTGRGWDNTVFKLRRPPPYAPSKL
FT YPDLMDLDLPQSPPNKWLKDDSKKILKPVELETSGGIDDFLSSPSEDSPNELEIIDPRS
FT LVLSDMAQKLFKNNKEVFIDIEGSATDPVEIALYGVEKNQYIHIFRLPKDSESFKKASR
FT HSHGLIASDMADHINLFIDKNIKSMFSAIPKDQIVHCQGSDIKELLKFYGRSDINVADS
FT KWKKKDYMSYHEGILDIVSDILPCKHSGTVKDKTGALTSPHCALVDCMMFACAAKGHIT
FT IEDPKPVQ"
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SQ Sequence 3368 BP; 890 A; 695 C; 699 G; 1084 T; 0 other;
jq717262 Length: 3368 07-OCT-2012 Type: N Check: 1144 ..
1 cgcactgggg atccgagtta aagtatcaat cttccgtgta taatctcaag
51 agatgcatta tccatggctg cactccaggg gccgcaccaa gtgtgaggcc
101 cacacagcaa aagccctcat aataattctc ctgacagcca actgcaaagc
151 cctcattgct gagatgctcc aagcagcagc aggcaacgac agctccatct
201 gtcatggaat gatgtttacc gaaccagttg gttcatttct aggcataaat
251 cccaacacca ctgatgaccc atttgaacta catgctcttt cactgaacca
301 aaatgtgact gacaagatca tgatctttca aaatggattg aaactatttg
351 ggtctgaaac aaggaattat agcataacca gcggtcctgg acttctggtt
401 ggcttctttg gtcacagtag atcaggagtc tataaaaacc ttactttcac
451 aaacaacaca acattcaaaa tttgtgtttc ttgcaaaagt agattcaata
501 tcactcttgt tgtatacaat aaattcacaa agaaggctag cacaaccatt
551 tgccctgatg aatttgttcg aaagaagcgc agtgatgtaa tagtgtcata
601 caacttaacc tgtgttatat tacacaacaa gaacatgatc acccatcaca
651 aaactgcttt aaatgcagaa ttttcaccaa gaggcttaca acaattgtct
701 accaagaatg atgtggaacc tggttgtgac tctaatgttg gtatctttgg
751 acatagcagt gggactgacg caggatgggg gattgcaggt ttcttcacat
801 tagggataac aaattcactt caaatatctg aaattgaaca tgttacagat
851 gctatagcgt gtaaaattat aaaaactgca aattatacaa ccaacgccct
901 gttcttattg aacaaagaag agtcagaaat tagagaccat gtagttgaac
951 atgaactagc cttgaattac ttactggcgc accaaggtgg cctttgcaat
1001 gtggtgaagg gcccaatgtg ttgttcagac attgatgatt tttcaaaaaa
1051 tgtctcagac atgattgaca aagtccatga agaaatgaag aaattttatc
1101 atgagccaga cccattcgga ggtctaggat caattgggtt ctttggaact
1151 ttgtttggac atattttgca gtggattcca atcatccttt taaccatatt
1201 tatgtgtttc atctgttcgt gggtcaaaaa atagagagac caaccgtccc
1251 gacgggtcgg ttgtctgctt gtctcccggt gggccgccct ggctgctctt
1301 ttcctccggg ggttgtcgct tggtggtttc ggttggtttg tctgtctccc
1351 ggcgggccgc cctggctgct cttttcctcc gggggttggg gcttggtggt
1401 cgtggctggg cctgcgggct ggttactgaa ctggtttggg gtcctcgatt
1451 gtgatatggc ccttagcagc acaagcaaac atcatgcaat ctactagtgc
1501 acagtgtgga ctagtcaagg caccagtttt gtcctttaca gttccagagt
1551 gtttgcatgg aaggatgtct gagactatgt ccaaaatgcc ttcgtggtaa
1601 ctcatataat cctttttctt ccactttgaa tctgctacat ttatgtcaga
1651 cctcccataa aacttcagaa gttctttgat gtcagagcct tgacaatgta
1701 caatctgatc ttttggtatt gcactaaaca ttgacttgat gtttttgtca
1751 ataaacaggt ttatgtggtc tgccatatct gaagcaatca acccatgtga
1801 gtgccttgac gcctttttga aactctctga gtctttaggg agtctgaaaa
1851 tatggatata ttgattcttt tcaacaccat aaagtgctat ttcaacaggg
1901 tctgtggctg aaccttctat gtcaatgaaa acctctttgt tattcttgaa
1951 caatttctgt gccatgtcag aaagaactaa agagcgtggg tcaattattt
2001 ctaactcatt aggactgtct tcactgggac tgctgagaaa atcatcaata
2051 ccaccactag tttccagctc aactggctta agaatctttt tagaatcatc
2101 ttttagccac ttgtttggtg gactttgtgg caggtctaaa tccattaaat
2151 cagggtatag ttttgatggt gcatatgggg gaggtctcct cagtttaaaa
2201 actgtgttgt cccaaccgcg acctgttaga tttgatctta tagacacaac
2251 acatgcacca tttggtgaaa cacatacctt ataaaacaag tcttcaaaaa
2301 gtgttctctc ctcatcaagt ttgatttcaa gttgtaggtc cttttgggct
2351 gcaacaagca cagacaaaag ctttgttctg ttctgatctg ttaccatgat
2401 cttttcaagc tttggatgac tacttattga attagcagcc ttcacaacac
2451 ttttcactgt gatattatag cctgatgagt tttttggtac actgaattca
2501 acaacatcaa gacagtgatg ttttgatgat aaagctttaa ttactgaggc
2551 attaacaaac attcctgcat ccagcaatga tatatcattt agagcttcaa
2601 acaattcttt gaatgtacat ccagatctct gtagcatgat ggagactgta
2651 atcgatggtg aagtaccaaa ctgatttgct agttcttctg agctaacacc
2701 aatccatgat ttgggtttgt tgttctcatt tctggggttg ggtttttgag
2751 ggacaaagct agcgaatagt gaactaaatc tctcatggtc ttcatgactg
2801 agaccagtct caaattcaaa tttgcttgag ggtttgtctc tgccaccttt
2851 gtattctgct tttttcttta ttcgttccag attgtcaatg cattgcatta
2901 gatcttcatc tgacatttgt gttgaatcta tttcaactac aacctgttct
2951 gaggtcacat ttgttccttc agccaagtat ttgttaagtt ttcttagttt
3001 ttgtagatca tccctggttt ttgtctcttt cctcagacgt cttagtacat
3051 cattcacctc attaatgttt atttttgcac taatcagttt gacatcttta
3101 aagaggtcgt tgtttaggtt ggcctggaaa ggccttagga ctttatttag
3151 atgtttcttt acaactaact gattcatggc cttgtttggg tggagggggc
3201 ctctgctgct gggctgttcg ttgttggcag gctgcttggg gcgcagggga
3251 cgagattgcc ctgcgcacaa ccacgctgtc caattccctg ttgagatgct
3301 gtccacctgt gtttattcac ttttgattta tcttaaagat agatcttgaa
3351 actcggatcc tctgtgcg