Sequence of DPV Golden Gate virus
Golden Gate virus isolate BC segment L, complete sequence.
ACC No: JQ717263
Dated: 2012-10-07 | Length: 6922 | CRC: 1014581456
ID JQ717263; SV 1; linear; genomic RNA; STD; VRL; 6922 BP.
XX
AC JQ717263;
XX
DT 21-AUG-2012 (Rel. 113, Created)
DT 07-OCT-2012 (Rel. 114, Last updated, Version 2)
XX
DE Golden Gate virus isolate BC segment L, complete sequence.
XX
KW .
XX
OS Golden Gate virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae;
OC unclassified Arenaviridae.
XX
RN [1]
RC Publication Status: Online-Only
RP 1-6922
RX PUBMED; 22893382.
RA Stenglein M.D., Sanders C., Kistler A.L., Ruby J.G., Franco J.Y.,
RA Reavill D.R., Dunker F., Derisi J.L.;
RT "Identification, characterization, and in vitro culture of highly divergent
RT arenaviruses from boa constrictors and annulated tree boas: candidate
RT etiological agents for snake inclusion body disease";
RL MBio 3(4):e00180-12(2012).
XX
RN [2]
RP 1-6922
RA Stenglein M.D., Franco J.Y., Kistler A.L., Sanders C., Reavill D.,
RA Dunker F., DeRisi J.L.;
RT ;
RL Submitted (28-FEB-2012) to the INSDC.
RL Department of Biochemistry, University of California, San Francisco, Byers
RL Hall, Rm s403c, 1700 4th St, San Francisco, CA 94158-2330, USA
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CC GenBank Accession Numbers JQ717263, JQ717264 represent sequences
CC from the 2 segments of Golden Gate virus isolate BC.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6922
FT /organism="Golden Gate virus"
FT /segment="L"
FT /host="Boa constrictor"
FT /isolate="BC"
FT /mol_type="genomic RNA"
FT /country="USA:California"
FT /collection_date="08-Jul-2009"
FT /db_xref="taxon:1223562"
FT gene 121. .471
FT /gene="Z"
FT CDS 121. .471
FT /codon_start=1
FT /gene="Z"
FT /product="Z protein"
FT /protein_id="AFP93554.1"
FT /translation="MSGSTAIGLTTEVISIITFILVIAIFVIEIVSCVTMMTLKAITLK
FT KRLSFCQGCGKNASLVILPCKNKVCMECALKMRCPVCYEACLWCENPDGSLSSLALINK
FT ERNKVRDNLPEP"
FT gene complement(630. .6830)
FT /gene="L"
FT CDS complement(630. .6830)
FT /codon_start=1
FT /gene="L"
FT /product="L protein"
FT /note="L polymerase"
FT /protein_id="AFP93553.1"
FT /translation="MSSICPEDSELERLKGLVLEVLSYERDLYRPGWISNTAGEMAMNA
FT IKLRSTIHELNCCRDTGLKHNNDLKEMNELFDEAIGSHETVKTIVPDGYLIDKNNNVLT
FT VLEVSTRTEPSDQTKKVQLDRLKYDGFENLLRPLGWTLNVITISEKKPRIGRIPEILMF
FT KLLSTSLSILSYTTDICNWISEEDYLELKKSLTSYDFRTLTEEFKGQRLLFDIESAEDP
FT YKDLFDWMLKNSEKLPFSLNWEGPKITEMIQDFKREDKQLRLLEIMRSAVTGLNFRTNH
FT LSLLNKLKSLNLLNTRRKQNKVYDYIALMLFVRDSEIHDFPKGWFPSVNDRLVRVDSVD
FT SPLSVYKKLVERMIKSLQSLQNEVGSKQKLGELKILIKFLEESSNNFIEPPVLKTMYFG
FT LPARVLVPQPSLCLKIINDVPYEPQTTIVTSDETDTIEKVALNLILSQKTRSTPRASMS
FT EEFFFQSVNGCLLLYKCTGEGQKAFSILCKSYKQGELRYSFYSFNINPSRLFPLIFSAK
FT PIANLVDQLIMLINPICEDAERLQETIKRQESVNEFLISSEYSDKQIDDLKVKVTYLIY
FT GILTTPTKRLQIELQSQRYYIMDTLSIIHHKDLKAKVIGNCITYDEYYLRDLAHGLINE
FT ILSCKNIGLFLKVTWALNISYLCHLITKETPDRLSDLRDCYEKFFKPKFQFMSNMIYDC
FT KSVDELVERMEQEVNDFIQCEEPSFETKPFLYEPILADFLKWISTEKFNGIDGEQLLNP
FT KDYLTSNIDVLDLTSNKSTFKRSKNHHMNDVLDQQYDTEKLLKRVISERLHKRITKSTK
FT AGDDPSTAKSFKSGGESVKERNWKAGGEKRKKTRLAYEEFLGIVQGLIVETDSEEDLND
FT FLLQINKCLHEIDDELKKMNPKEINDLQKTKYCLVLDVIRELLGPEVCDLVRSTCYSTK
FT LSDLPTDLLRKEAYERIVGETMSRAPLEFPRNVDTIDVTNISAGMVVTKYELKEFFSSF
FT KFLLLWAGFNNFQGTYDHRSGPQSSFLSISNKYRGESMLSTRVTNSEALQDRLIAIKYG
FT APTLRNILFSTLNLEMKNSEIGPNNKPLQFGLAIKEQVGGPRELYVGDSDTKLITRVLE
FT ETSRNIGNRLNNSCLNSDKKFSNFMKRIARSFFENEIVLSMDHSKWGPFNSPLQYHLMF
FT EAMESINDTDGRRLDFSFAKTILKWHLFKAVETPQILAEDVILSSLDVSLGRRDRQIGK
FT ERTFETFMVDAVLSNKPVPSQIHSWFDMGQGILHHTSDLYGSLASEYITKKIKEIFGVR
FT SSTMNTSDDMVLLFHIKYKNEDSNQKDELLLITNFLCLVSNCLNKHISPKFCCSPLVGE
FT FKSHFEVEATMVPLFTKFFAASINNFRCKTPMELFNTCDAIVEQGICNGMSLKVADSLK
FT GRMVEMLGWLGYVADPLMKPVESRQQDWLEGCLSYRKLRSLESWLMDLGIGKLKLDVLK
FT LELLKVIKELRESSIAPSVAYNKMVDISKSELGEITLWFPTLNGEFKLIVRSKLNLGTT
FT INETCENLLIKKLINHYSRYSKQGLGLLIAEGLERSAFQSSVVTGFIGLSISLSGACIR
FT KGDGTFLTLKESKNVVKPVAEVFPSLVMQSVCAVGDWVCGVESEMDKQMNKSIYMRTSL
FT VNTAEFRFGLDELTAAIEMTMPDLFDKYLKDIVPPDKRLLMRHSWKVRPEMELLIECAN
FT KGLSIFDGRIDRQEEAVVLVDYYEPGRLLRRTMKLEKRGPERTARKGLQAIVNRMILDS
FT ILEPKIIDKTMVMDATKLAPYEGSMEDLKSHGESGVRRYIQQVLLGRESHYRQKEDEPN
FT EITSSNVVVYGRGTPEFPLEDGTWLRGAKLGTSNPIKLQCCLQQISNDLKIQATLITHT
FT GRAHYQDFMFLKRVIISDSDFDEPEILDTLEFRDVVVVENSKPNGKPCFLFMGCVIPLE
FT SDLVGSIMTHMSEAEWEELWKLVRTYFITRMKGEISCLPKARFDALWGMVSRIFGYSTV
FT EKVVTMGFHQLDSFAEFLTFTDRVFTTKGPTLVFHRLKGLLVSYPAGPLLYKGHRLMLY
FT KDWASGTPEPETLED"
XX
SQ Sequence 6922 BP; 1944 A; 1529 C; 1220 G; 2229 T; 0 other;
jq717263 Length: 6922 07-OCT-2012 Type: N Check: 3287 ..
1 cgcactgggg atccgcgttt tccagtatcc atccgaagtt ctccattcaa
51 tagtgaggaa tctgacgact gccatctgaa cgtgtggaat caacggagcc
101 acatctgact agtgcccagc atgagcggct ccaccgccat tgggctgact
151 acagaggtga tctccataat aacattcata ctagtgattg ctatatttgt
201 gattgagatt gttagctgtg ttacgatgat gactctgaaa gcaatcacat
251 tgaaaaaaag actcagcttt tgtcagggtt gtgggaaaaa tgctagtctt
301 gtcattctcc cctgcaaaaa caaggtctgc atggaatgtg ctctgaagat
351 gagatgccca gtttgctatg aagcatgcct ttggtgtgag aatcctgatg
401 gatctctttc ctcactagca ctcatcaaca aggaaagaaa caaagtcagg
451 gacaacctcc ccgaaccata aaggctcaga caaacaaccc accgaccaat
501 ggacagagag acaacaaccg gaaaggagca agaaagagac aacccagacc
551 accggagacg gccctgccgt ctccggtggt ctggggggtc tcctgtgcct
601 ccgcccgttc ccgccgggac ctccgctgct cagtcctcca gggtctcggg
651 ctcaggtgtc ccagatgccc agtccttgta aagcatgagt ctgtgcccct
701 tatatagcag tggtcctgct gggtaactca caagcaaccc ttttaatcta
751 tggaacacca gagtgggacc ttttgtagtg aaaaccctat ctgtgaatgt
801 tagaaattct gcaaaggagt caagttgatg aaaacccatg gtaactacct
851 tttcaactgt agaataacca aaaattctgc ttaccatccc ccacagagca
901 tcaaatctag cctttggaag acatgatatt tctcccttca ttcttgttat
951 gaaatatgtc ctcactaact tccaaagctc ctcccattca gcctctgaca
1001 tatgagtcat tattgatccc actaaatctg attccagagg aatcacacaa
1051 cccatgaata aaaaacatgg ttttccattt ggttttgagt tttccacaac
1101 cacaacatct ctaaactcca acgtgtctaa tatctcaggt tcatcaaaat
1151 ctgagtcaga aatgatcacc cttttaagaa acatgaagtc ttgatagtga
1201 gcacgtcctg tgtgtgtgat cagtgtcgcc tgaatcttga gatcattgct
1251 gatttgctga aggcagcact gcaactttat tggattagat gttcccaatt
1301 tggcacctct aagccatgtg ccatcttcta ggggaaactc tggggtgcct
1351 ctcccataca caaccacatt gctagatgtt atttcatttg gttcatcttc
1401 cttctgtcta taatgtgact ctctacccaa aaggacttgt tgaatatacc
1451 tcctaacacc agattctcca tgcgatttta ggtcttccat ggaaccttca
1501 tatggggcga gttttgttgc atccatgacc atagtcttat caataatttt
1551 tggctccaat attgaatcta agatcattct attaactatt gcttgcaagc
1601 cttttcttgc agtcctttca ggtcctctct tctcaagctt catggttcgt
1651 ctgagcaatc tacctggttc ataatagtcc accaacacga ctgcctcctc
1701 ctgcctatca attctaccat caaaaataga caatccttta ttggcacact
1751 ctatcaacaa ctccatttca ggtctaactt tccaagagtg tctcatgagc
1801 agccttttgt ctggtggtac aatatcttta agatacttat caaaaagatc
1851 aggcattgtc atttcaatgg ctgcagttaa ctcatctaac ccaaatctga
1901 attctgcagt gttgacaagt gatgttctca tataaatgct tttattcatc
1951 tgcttatcca tttcactttc aactccacaa acccaatcac caactgcaca
2001 gactgattgc atgaccaagg agggaaagac ttcagctact ggtttaacaa
2051 catttttgga ctcctttaag gtcaggaatg tgccatcacc cttcctaatg
2101 catgcaccag ataagctaat actcaatcca atgaaccctg tcaccactga
2151 gctttgaaaa gcagacctct cgagaccttc tgctatcagt aagccaagac
2201 cctgctttga atatctagag tagtggttga tcagtttttt gattaacaag
2251 ttctcacatg tctcatttat tgttgtgccc aaattgagtt tgcttctgac
2301 aattaatttg aattctccat tgagagttgg gaaccataaa gtgatttctc
2351 ctaattctga tttactgatg tctaccatct tattatatgc tacagatggt
2401 gctattgatg actctcttaa ctcttttatc accttaagta actcaagctt
2451 cagcacatca agtttcaatt ttccaattcc caaatccatc agccaactct
2501 ctaaagatct cagttttctg taagaaagac agccctccaa ccagtcttgt
2551 tgtcttgatt ctacaggctt catcaaagga tcagcaacat atcctaacca
2601 gcctaacatc tcaaccattc tcccttttag tgagtcagcc accttcagag
2651 acataccatt acaaatcccc tgttcaacaa tagcatcaca tgtgttgaaa
2701 agttccatcg gtgttttgca tctgaaattg ttgattgagg ctgcaaaaaa
2751 cttcgtgaat agaggaacca tggtggcctc aacttcaaaa tgtgatttga
2801 attctccaac aagtggacta cagcaaaatt tgggagaaat gtgtttgttc
2851 agacagttgg acaccaaaca cagaaagttc gtaatcaaaa gtagttcatc
2901 cttctgatta ctgtcctcat ttttatactt aatgtgaaac aataagacca
2951 tatcatcaga tgtgttcatg gtacttgacc taactccaaa aatttctttt
3001 atcttttttg ttatgtattc ggatgctaag gaaccgtaga gatctgatgt
3051 gtgatgtaag attccctggc ccatatcaaa ccaagagtgg atttgtgaag
3101 gcacgggttt gttggataga acagcatcca ccataaatgt ttcaaaagtt
3151 ctttctttcc caatttgtct gtctcttctc cccaagctta catcaagaga
3201 agaaaggatg acatcttcag ctaagatttg gggtgtctcc actgccttaa
3251 acaaatgcca ttttagaatg gtcttagcga atgagaaatc tagtcgtctc
3301 ccatctgtgt cattgatact ctccatcgcc tcaaacatta aatggtactg
3351 gagaggactg ttaaaggggc cccattttga gtgatccatg cttaaaacaa
3401 tctcattttc aaaaaaagac cttgcaattc ttttcatgaa gttggaaaac
3451 ttcttatctg aattaaggca gctattgtta agcctgttac caatgttcct
3501 tgaagtttct tccaaaactc tagttattag ttttgtatca gaatccccaa
3551 catatagttc tctgggtcca ccaacctgct cttttattgc aagtccaaat
3601 tggagtggct tgttgtttgg cccaatttca gaattcttca tctctaaatt
3651 tagtgtggaa aaaaggatat ttctcaatgt tggtgcacca tattttattg
3701 ctatgagtct atcctgtaat gcttctgaat ttgtaaccct tgttgaaagc
3751 atgctttctc ctctatattt attggagatt gacaagaatg aactttgggg
3801 gcctgatcta tgatcatatg ttccctgaaa attgttaaac cctgcccaaa
3851 gaagcaggaa cttaaaactt gagaaaaact ccttcaactc atattttgtg
3901 acaaccatac ctgctgatat attagtcaca tcaatggtgt caacattcct
3951 aggaaattct agtggggctc ttgacattgt ctcaccaaca attctttcat
4001 aagcctcctt tctgagcagg tctgtaggga gatctgacaa tttagtgctg
4051 taacacgtag aacgaacaag gtcacaaact tcaggaccta gcagttcacg
4101 aatcacatcc aaaaccaagc agtacttggt tttttgaaga tcatttatct
4151 cctttggatt cattttttta agctcatcat caatctcatg taagcattta
4201 ttgatttgta ggaggaagtc atttagatct tcttcagaat cagtttcaac
4251 aatgagtccc tgaacaattc ccaagaactc ctcataagcc aatctggttt
4301 tcttcctttt ttcaccgcca gctttccagt tcctttcctt cacagattca
4351 ccccctgatt taaagctctt ggctgtgctt ggatcatctc cagctttggt
4401 tgattttgtt attctcttgt gtagtctctc gcttatcact ctcttaagaa
4451 gcttctcagt gtcatattgc tggtctagta catcattcat gtggtggttc
4501 ttagatctct tgaacgtact cttatttgag gttagatcca agacatcaat
4551 gtttgaagtt aggtaatcct tcgggttaag taattgctca ccatcaatgc
4601 cattaaattt ttctgttgag atccacttta gaaaatcagc aagaataggt
4651 tcatatagaa aaggttttgt ctcaaaggaa ggttcctcac actgaataaa
4701 atcgttgacc tcctgttcca ttctctcaac cagctcatca acactcttac
4751 aatcataaat catattagac atgaactgaa actttggttt gaagaacttt
4801 tcataacagt ctcttaaatc tgacaacctg tctggggtct cctttgtgat
4851 caaatggcac aagtacgata tgttcaaggc ccatgtcact tttaagaaca
4901 gacctatatt tttacaagaa agaatttcat tgatcagtcc gtgggcaaga
4951 tctcttaaat aatattcatc ataagtaata cagtttccaa taactttggc
5001 tttcaagtcc ttgtggtgaa tgatagacaa agtatccata atgtagtatc
5051 tctgtgattg tagctctatc tgcagtcttt tggttggagt tgtcaaaata
5101 ccgtaaatca ggtatgtgac cttgacctta agatcatcaa tctgcttgtc
5151 agaatattca gatgaaatta agaattcatt cacagattcc tgtctcttaa
5201 ttgtttcctg cagcctttca gcatcttcac agattggatt aatcagcata
5251 attaattgat caactaagtt cgcaatgggc tttgcgctaa atatgagtgg
5301 gaaaagtctt gaagggttaa tattgaaaga atagaaactg tatctaagct
5351 caccctgctt gtagctttta caaagaatac taaatgcctt ctgtccttca
5401 cctgtgcact tgtacagtag gagacagcca ttaactgatt gaaagaaaaa
5451 ctcttcactc atgctggctc ttggtgtgct tcttgttttc tgggaaagaa
5501 tgagatttaa tgcaaccttt tcaatagtat ctgtctcatc ggatgttaca
5551 atggttgttt gtggctcata aggtacatca ttaatgattt ttagacataa
5601 tgatggctga ggtacaagga ctcttgctgg caacccaaaa tacatagtct
5651 tcaacactgg aggttcaatg aaattattag atgattcttc tagaaattta
5701 atgagaattt tcaattctcc caatttttgt ttgctgccta cttcattctg
5751 aaggctttgg agtgatttta tcattctctc aactaatttt ttgtacactg
5801 agagtggtga atctacagaa tccacccgca caagtctgtc attcacactt
5851 gggaaccaac cctttggaaa atcatgaatc tctgaatctc ttacaaagag
5901 catcaatgca atgtaatcat acaccttatt ctgcttcctt ctggtgttta
5951 atagatttag tgattttagt ttgttcagta gactcaagtg attggttcta
6001 aaatttaagc ctgttacagc acttctcatt atttctaaaa gccgcaactg
6051 cttgtcttcc cttttaaaat cttgtatcat ctctgttatt ttgggacctt
6101 cccagtttaa actgaaaggt aatttctcgc tgtttttcag catccagtca
6151 aagagatctt tatatgggtc ttctgctgac tcaatatcaa aaagtaacct
6201 ttgtccctta aattcctctg tcaaggttct aaaatcataa cttgttaatg
6251 acttcttgag ttccaaataa tcctcttctg agatccaatt gcaaatgtct
6301 gtagtgtaag atagaattga taatgatgtt gatagtaatt tgaacatgag
6351 gatttcagga atcctcccta ttctcggttt cttttctgaa attgtgataa
6401 cattaagtgt ccaaccaagt ggtcgcagca agttctcgaa accatcatac
6451 tttaatctgt caagttgaac cttcttagtt tgatcagatg gctcagtcct
6501 agtactcact tctaaaactg ttagaacgtt attatttttg tcaatcaagt
6551 aaccatcagg aacaattgtt ttgactgtct catgtgatcc aatggcctca
6601 tcgaacaatt cgttcatctc cttgagatca ttgttgtgtt tgagccctgt
6651 atctctgcag caattcaact catggatagt tgatctaagt ttaattgcgt
6701 tcatggccat ctctccagct gtatttgata tccatcctgg tctatacaaa
6751 tccctttcat aagacaacac ctctagcaca agacccttga gtctctctag
6801 ttcggagtcc tctggacata tggagctcat agttgcctgg ttgttgtcac
6851 ctcaccaccc ttgatgcatc aaataaactt ttcacatttg agagatctgg
6901 aaatacgcgg atcctcagtg cg