Sequence of DPV Golden Gate virus
Golden Gate virus isolate BC segment S, complete sequence.
ACC No: JQ717264
Dated: 2012-10-07 | Length: 3482 | CRC: -1724567719
ID JQ717264; SV 1; linear; genomic RNA; STD; VRL; 3482 BP.
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AC JQ717264;
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DT 21-AUG-2012 (Rel. 113, Created)
DT 07-OCT-2012 (Rel. 114, Last updated, Version 2)
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DE Golden Gate virus isolate BC segment S, complete sequence.
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KW .
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OS Golden Gate virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae;
OC unclassified Arenaviridae.
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RN [1]
RC Publication Status: Online-Only
RP 1-3482
RX PUBMED; 22893382.
RA Stenglein M.D., Sanders C., Kistler A.L., Ruby J.G., Franco J.Y.,
RA Reavill D.R., Dunker F., Derisi J.L.;
RT "Identification, characterization, and in vitro culture of highly divergent
RT arenaviruses from boa constrictors and annulated tree boas: candidate
RT etiological agents for snake inclusion body disease";
RL MBio 3(4):e00180-12(2012).
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RN [2]
RP 1-3482
RA Stenglein M.D., Franco J.Y., Kistler A.L., Sanders C., Reavill D.,
RA Dunker F., DeRisi J.L.;
RT ;
RL Submitted (28-FEB-2012) to the INSDC.
RL Department of Biochemistry, University of California, San Francisco, Byers
RL Hall, Rm s403c, 1700 4th St, San Francisco, CA 94158-2330, USA
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CC GenBank Accession Numbers JQ717263, JQ717264 represent sequences
CC from the 2 segments of Golden Gate virus isolate BC.
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FH Key Location/Qualifiers
FH
FT source 1. .3482
FT /organism="Golden Gate virus"
FT /segment="S"
FT /host="Boa constrictor"
FT /isolate="BC"
FT /mol_type="genomic RNA"
FT /country="USA:California"
FT /collection_date="08-Jul-2009"
FT /db_xref="taxon:1223562"
FT gene 161. .1444
FT /gene="GPC"
FT CDS 161. .1444
FT /codon_start=1
FT /gene="GPC"
FT /product="glycoprotein"
FT /note="GPC protein"
FT /protein_id="AFP93555.1"
FT /translation="MMSHIRLVLCSALLSMMSCPTSGTIGEMLSLAASSNSSICHGMQF
FT TEPTESFMGILPNETLPMFIFSIMHSEAVPKVGKTLRISHDMKLFGGEAVNYMIFVNKI
FT LYEPISYYNYTGSCRQQGLSSCVRVYSDLVNGSKGNPSVKLGFTAIELNKTKNTDFHNL
FT GFKICFSCRDHNGIRLVVYNKNNRTAQLMMCPSELIFSQDFTINSTSVNPSEEAAVPLL
FT NVTGYTCIALHNKNMLTHHSPALSSGSKVDNTLEPGCDSNVGLFGHSTGTDYGWGLANF
FT FSAGITNSLQISQLEHVTDAIACKIAKTSNYTTTALFLLNKEEGEIRDHVIEHEVALNY
FT LLAHQGGLCSVVKGPMCCSDIDDFRRNVSDMIDKVHEEMKKFYHEPDPFGGLGTWGFYG
FT TIFGHVLQWIPIIIMVVVVCFVCSWVRK"
FT gene complement(1616. .3391)
FT /gene="NP"
FT CDS complement(1616. .3391)
FT /codon_start=1
FT /gene="NP"
FT /product="nucleoprotein"
FT /note="NP protein"
FT /protein_id="AFP93556.1"
FT /translation="MAAFQKAAVNQLALKKKLNKMLAPYQRELNNQIFKDVKALRVGLD
FT INKVNDTLRRLRKETKGPNDLKNLRDLNETAAGLSGMVATQRTVEIDSSLMSDEELIQC
FT IENIDVIKKKAEYKGGSRPRISEFESETGMSKSDHEMFNKLFNRFAPKKDPGPAAFSTP
FT KSWVGISPADLANQFGTSPAITICLIMMRTNSPFKQILDALHDISLLDQGMFVNASVVK
FT AMTSQHPCLDCVEYTVPKNSSGYNITVKAVVKAANVLSKLPKVEKLVIDDDNRVEIIRT
FT LLTIQRELNIKIQVNEERGLFEDIFYKICVSPNGPCVVSIRSELTGRGWENTIFRLRRP
FT PPYAPRLYPDLMDLDLDALPPVKGDKKTEEESKIYIFKPAADEIDEYIRSPESASSDSE
FT IPDPRVLYMANACEDLFKGGDSVFMDIEGTAQDPVEIALFNPDTGKFVHIFRMPKDKDG
FT FKKASKHAHGLLLDDISDHPDLQTDKNIEAFFSKVPLSARIFCQGSDIEECLKFFGRKD
FT LKPTDCKWKREEFMKYHENILDELSEVFPCKHSGTVKDKKGALTAPHCALLDCLMFSRT
FT ASGGKKTKDPTPATI"
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SQ Sequence 3482 BP; 895 A; 798 C; 734 G; 1055 T; 0 other;
jq717264 Length: 3482 07-OCT-2012 Type: N Check: 3718 ..
1 cgcactgggg atccgagttt tccagtatcg aacaaaaata aacaatcaaa
51 aggagtccaa tctcaagcca acaaccacaa gagcgccgac aagaaaggag
101 ccagcaaaaa agcacaaggc accaaggctc ctgcccacaa aggcagccct
151 gaagaccaga atgatgagtc atatccggtt ggtgctctgc tcagctctgc
201 tgtctatgat gtcctgccca acatctggga caattggtga aatgctttcc
251 ttggcggcat caagcaactc tagcatatgt cacggcatgc agttcactga
301 accaactgag tcattcatgg gaatcctgcc aaatgagacc ctaccaatgt
351 tcatcttctc tattatgcac agtgaggctg tgcccaaggt ggggaagact
401 ttgagaatca gccatgatat gaaactcttt ggaggggaag ctgtcaatta
451 catgatattt gtcaacaaga ttctttatga accaatttct tactacaact
501 acactggctc ttgtagacaa caagggctct catcctgtgt gagggtttat
551 tccgatcttg ttaatggctc caaaggcaac ccatcagtga agcttggttt
601 cacagccatc gaactcaaca aaaccaaaaa caccgacttt cacaacttag
651 gcttcaaaat ttgcttctcc tgtagagatc ataatggaat aagattggtt
701 gtctacaaca aaaataaccg cactgcacaa ttgatgatgt gtcccagtga
751 attaatcttc tctcaggact tcactattaa ttcaacatcg gtgaatccta
801 gtgaggaggc cgcagtacca ttgctgaatg tgacaggtta cacgtgcatt
851 gccttacaca acaaaaatat gctcacccac catagccccg ctctttccag
901 tgggtccaag gtagacaaca cactggaacc tggttgtgac tccaacgttg
951 gactcttcgg ccatagcaca gggaccgatt atggctgggg gcttgcaaat
1001 ttctttagtg caggcataac aaactcactt caaatatcac aattagaaca
1051 tgtgactgac gccattgcat gcaagatagc caaaacatcc aactacacaa
1101 ccacagccct gttcctgtta aacaaggaag aaggtgaaat cagagatcat
1151 gtcattgagc atgaagttgc tctaaattat ctcttagctc atcagggtgg
1201 actctgcagt gttgtgaagg gcccaatgtg ttgctctgac attgatgact
1251 ttagaaggaa tgtttctgat atgattgata aagttcatga agaaatgaag
1301 aaattctatc atgaaccaga tccctttggt gggcttggca cttggggctt
1351 ctatggtacc atttttgggc atgtgctaca gtggattcct ataataatta
1401 tggtagtcgt ggtttgtttt gtttgcagct gggtaagaaa gtaacaccac
1451 gtgcccaccc tctggttgtt tgtttcccgg aatggtagtc gtggtttgtt
1501 ttgtttgcag ctgggtaaga aagcaacacc acgtggccca ccctctggtt
1551 gtttgtttcc cggtccgccc gccctgggtg ctttgttcgg tccgggcttg
1601 gttgtttgga cccgtttaga tggtggctgg ggttgggtcc tttgtttttt
1651 tgcctccact tgctgttcta ctgaacatca ggcaatccag cagagcacaa
1701 tgtggtgcag tcagggctcc tttcttgtcc ttcactgttc ctgagtgctt
1751 gcaggggaaa acttcagata gctcatcaag tatattctca tgatatttca
1801 taaattcttc ccttttccac ttacagtctg tgggctttaa atcttttcta
1851 ccaaagaatt taaggcactc ctcaatatct gacccttggc agaagattct
1901 tgctgagagc ggtactttgg aaaagaaagc ctcaatgttt ttgtcagtct
1951 gcaggtctgg atggtcagat atatcatcca acaaaagacc atgtgcatgt
2001 ttggatgcct ttttgaaacc atccttgtcc tttggcatcc taaaaatatg
2051 cacaaatttg cctgtgtcgg gattgaacag tgctatttcc acaggatctt
2101 gagctgtacc ttctatgtcc ataaacacag agtctcctcc cttgaaaagg
2151 tcttcacaag cgtttgccat ataaagaact cttggatcag ggatctcaga
2201 gtctgagctt gcactttctg gacttcttat gtactcatca atctcatctg
2251 cagcaggctt gaagatgtaa attttggact cttcttcagt tttcttgtca
2301 cccttcactg gtggaagtgc atccaagtca agatccatca aatcagggta
2351 caatcttgga gcataaggag gtggtcttct caaacggaag atggtatttt
2401 cccaacccct gcctgttagt tctgatctta tggaaaccac acaagggccg
2451 tttggcgaga cacagatttt atagaagata tcttcaaaca gtcccctttc
2501 ttcattcact tgtattttga tgttaagttc tctctgtatg gtcagtaagg
2551 ttcttattat ttcaacccta ttgtcatcat caataaccaa tttctcgacc
2601 tttgggagct ttgacaacac atttgctgcc tttaccacag ctttgactgt
2651 aatgttgtaa ccagaagagt tctttggcac tgtatattca acacaatcta
2701 aacaaggatg ttgagaagtc atggccttta ccacagaagc gttcacaaac
2751 ataccctgat ccaacagtga gatgtcatgt agagcatcca gtatttgctt
2801 gaaaggagaa tttgtcctca tcattattag acagatagta atggcgggtg
2851 atgtcccaaa ctggtttgca agatctgctg ggctgattcc cacccatgat
2901 ttgggagtgg agaatgctgc aggtcctggg tccttctttg gggcaaacct
2951 gttgaacaac ttgttgaaca tttcgtgatc actttttgac attccagtct
3001 ctgactcaaa ctcactgatg cgtggtcttg atcctccttt gtattccgcc
3051 tttttcttta taacgtctat attttcaatg cactgaatta actcttcatc
3101 actcattaat gaagagtcaa tctccacagt cctctgagtt gccaccatgc
3151 ctgagaggcc tgcagcagtt tcatttagat ctctcagatt tttcagatca
3201 tttggtccct ttgtctcctt ccttagtctc ctcagggtgt cattgacttt
3251 attgatgtca agacccaccc ttagtgcttt cacatcttta aaaatctgat
3301 tgttgagctc cctttgatag ggtgccaaca tcttgttcaa cttctttttt
3351 aaggctagct gatttacagc agctttttga aaggctgcca tgttgcttgc
3401 agagctctgg tctcactttt ggggatagtc ttgcaggtat tgtccctttg
3451 gctatcgctg tgaaactcgg atcctctgtg cg