Sequence of DPV Switchgrass mosaic virus

Switchgrass mosaic virus polyprotein gene, partial cds.

ACC No: JQ768542

Dated: 2012-06-03 | Length: 1057 | CRC: -500645520

                
ID   JQ768542; SV 1; linear; genomic RNA; STD; VRL; 1057 BP.
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AC   JQ768542;
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DT   03-JUN-2012 (Rel. 113, Created)
DT   03-JUN-2012 (Rel. 113, Last updated, Version 1)
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DE   Switchgrass mosaic virus polyprotein gene, partial cds.
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KW   .
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OS   Switchgrass mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC   Tymoviridae; Marafivirus.
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RN   [1]
RP   1-1057
RA   Agindotan B.O., Okanu N.U., Oladeinde B.T., Voigt T.B., Gray M.E.,
RA   Long S.P., Bradley C.A.;
RT   "Detection of Switchgrass mosaic virus in Miscanthus and other grasses";
RL   Unpublished.
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RN   [2]
RP   1-1057
RA   Agindotan B.O., Okanu N.U., Oladeinde B.T., Voigt T.B., Gray M.E.,
RA   Long S.P., Bradley C.A.;
RT   ;
RL   Submitted (09-MAR-2012) to the INSDC.
RL   Energy Bisociences Institute, University of Illinois, 1206 W. Gregory
RL   Drive, Urbana, IL 61801, USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1057
FT                   /organism="Switchgrass mosaic virus"
FT                   /host="Miscanthus x giganteus (Kurt Bluemel)"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collected_by="Bright O. Agindotan"
FT                   /collection_date="Jul-2011"
FT                   /identified_by="Bright O. Agindotan"
FT                   /note="acronym: SwMV"
FT                   /db_xref="taxon:1027869"
FT   CDS             <1. .941
FT                   /codon_start=3
FT                   /product="polyprotein"
FT                   /note="contains capsid protein"
FT                   /protein_id="AFK73080.1"
FT                   /translation="GEAPESLLSMAFQGLKWASHSVYALMNSSHRRQLLHSSRRPRSLP
FT                   EDPEVSQLQGELLHQFQSLHLPLRGASMPNPLAAPFRLLPLGSASLGPSYSVAPLQPPP
FT                   ASASPDSMAENATQVGPAPARDDRLDRQPAIPAPPRVVETAPTHYIDLPFQWKITDFTG
FT                   AAAYHDTGDLSASPVLTTLCAPYRHAELISVELSLAPCPPSFTKPIMFTVVWTPATLSP
FT                   TDGKETDFYGGRQISIGGPVMLSSTTAIPADLTRMNPVIKSSVAYRDTPRWTMSVPAVS
FT                   GGDTKVNLATGFIRGVIRVSAPSGAAIKAAS"
XX
SQ   Sequence 1057 BP; 184 A; 413 C; 241 G; 219 T; 0 other;

jq768542 Length: 1057  03-JUN-2012  Type: N  Check: 6459  ..

       1  ttggtgaggc tcccgagtct ctcctttcca tggctttcca aggcttgaaa
      51  tgggcgtccc actccgtcta cgccctcatg aactcgagtc accgtcgcca
     101  gctcctccac agctctcgcc gtcctcgctc tctccccgaa gaccctgagg
     151  tctctcagct tcagggtgaa ttgcttcacc agttccaatc tctccacctg
     201  ccgctccgag gagcttccat gccaaatccg ctcgctgcgc cctttcgcct
     251  cctgcctctc ggttcagcct ccctcggtcc atcttactcc gtggcgcctc
     301  tccagcctcc gcctgcctcc gcgtcccccg actcaatggc cgaaaatgcc
     351  acgcaagtcg ggcccgctcc agctcgcgat gaccgccttg atcgccagcc
     401  tgctattcct gctcctcctc gtgtggttga aaccgcgccg acgcactaca
     451  tcgacctccc gttccagtgg aaaatcaccg acttcaccgg agccgcagca
     501  taccacgaca caggcgacct ctcagcctcc ccggtactga cgactttgtg
     551  cgccccatac cgacatgctg agctcatctc agttgagctt tcgctcgccc
     601  cctgcccgcc gtccttcacc aagcccatca tgttcaccgt cgtctggacg
     651  ccggccactc tctcacccac cgatgggaaa gagacggact tctacggagg
     701  ccgtcaaatt tccatcggcg gtccggtcat gctctctagc accaccgcca
     751  tcccagccga cctcactcgt atgaaccccg tcatcaagtc gagcgtcgcc
     801  taccgtgaca cccctaggtg gaccatgtcc gtccccgccg tctctggcgg
     851  tgacaccaag gtcaacctcg ccaccggctt catccgggga gtcatccgcg
     901  tctccgctcc atccggagcc gccatcaagg ccgcctctta ggcgcctccc
     951  gcgagaagga aaactcgccc ggctataggc cggtaagatg ttaaacctcc
    1001  agccctccgt gatcgcaaaa tcttaggtag caggtcggcc ataagacctg
    1051  tgggcaa