Sequence of DPV Potato virus A

Tamarillo mosaic virus isolate LL6 helper component protease gene, partial cds.

ACC No: JQ796691

Dated: 2012-06-11 | Length: 1371 | CRC: -1382740768

                
ID   JQ796691; SV 1; linear; genomic RNA; STD; VRL; 1371 BP.
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AC   JQ796691;
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DT   11-JUN-2012 (Rel. 113, Created)
DT   11-JUN-2012 (Rel. 113, Last updated, Version 1)
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DE   Tamarillo mosaic virus isolate LL6 helper component protease gene, partial
DE   cds.
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KW   .
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OS   Tamarillo mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1371
RA   Pechinger K., Cohen D., Blouin A.G., Joblin R., Laird A., MacDiarmid R.R.;
RT   "Identification of a naturally occurring, mild isolate of Tamarillo mosaic
RT   virus from a New Zealand tamarillo orchard";
RL   Unpublished.
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RN   [2]
RP   1-1371
RA   Pechinger K., Blouin A.G., MacDiarmid R.R.;
RT   ;
RL   Submitted (19-MAR-2012) to the INSDC.
RL   Bioprotection, The New Zealand Institute for Plant & Food Research Limited,
RL   120 Mt Albert Road, Sandringham, Auckland 1025, New Zealand
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1371
FT                   /organism="Tamarillo mosaic virus"
FT                   /host="Cyphomandra betacea (tamarillo)"
FT                   /isolate="LL6"
FT                   /mol_type="genomic RNA"
FT                   /country="New Zealand"
FT                   /collected_by="Allan Laird"
FT                   /collection_date="2004"
FT                   /identified_by="Robin MacDiarmid"
FT                   /PCR_primers="fwd_name: tamv 982 f, fwd_seq:
FT                   tagtragrggtagatgcaatgg, rev_name: tamv 2537 r, rev_seq:
FT                   tggytgytcatgtattatctcc"
FT                   /db_xref="taxon:12226"
FT   CDS             <1. .>1371
FT                   /codon_start=1
FT                   /product="helper component protease"
FT                   /note="HC-Pro"
FT                   /protein_id="AFL64816.1"
FT                   /translation="STGDVFWRGFNKTFLENKPINLDHVCSSDFSVEECGSIAALICQS
FT                   LLPCGKITCRACAAKNLSMDEDTFKEFQTQRAREMSAIILSKYPNFACVSQFIERYFSH
FT                   QRVLNPNVNAYREILKIVGGFTQSPYTHIQELNEILVLGGRATPEQLSSASAHLLEITR
FT                   FVRNRTDNIKKGSLALFRNKISAKAHVNTALMCDNQLDKNGNLIWGERGYHAKRFFSNY
FT                   FDIITPGGGYKQYIERRVPNGVRKLAIGNLIVTTNLEALREQLEGEPVEKKVITKACVS
FT                   MSDNNYKYPCCCVTLDDGTPLYSTFIMPTKNHLVIGNSGDPKFLDLPTDISTQMYIAKS
FT                   GYCYINIFLAMLVNVDEPDAKDFTKKVRDIIVPDLGEWPTLIDVATSCSLLSAFYPATS
FT                   AAELPRILIDHDLKTMHVIDSYGSLNTGYHVLKANTVRQLIQFASNSLDSEMKHYRVG"
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SQ   Sequence 1371 BP; 441 A; 264 C; 309 G; 357 T; 0 other;

jq796691 Length: 1371  11-JUN-2012  Type: N  Check: 9145  ..

       1  tcaacagggg atgttttctg gagagggttc aacaagacct ttttagaaaa
      51  taaaccgatc aatttagacc atgtgtgctc ttcagatttt tccgtagagg
     101  aatgcggatc aatagcagca ttaatttgcc aatcactgtt accgtgtggt
     151  aagatcacat gcagagcttg tgcagcgaag aatctgagta tggatgagga
     201  tacttttaag gaatttcaaa cgcagagagc ccgtgaaatg agcgcaatta
     251  ttctgagtaa gtatccaaac tttgcatgtg tctcacaatt cattgagcgt
     301  tacttctcac accaaagagt gttgaatccc aatgtcaacg cgtatagaga
     351  gatattaaag atagtgggtg gtttcacgca atcaccgtac acacacatac
     401  aggagctcaa tgaaatactg gtcctaggtg gtagagcaac tcccgagcag
     451  ctgagttctg cgtcagcgca cttgctcgaa ataacaaggt tcgttagaaa
     501  taggacggac aacataaaga agggatcatt ggctctcttt aggaacaaaa
     551  tctctgcaaa agcacatgtg aacacagcct taatgtgtga caatcaactt
     601  gataagaatg gcaatctgat atggggagaa agaggatacc atgcaaaacg
     651  tttcttctca aattactttg atattatcac accaggaggt ggatataaac
     701  agtatattga gagaagagtt ccaaatggtg tcagaaaact tgccattgga
     751  aaccttatag taaccacaaa tctggaagcc ctgcgggagc aacttgaagg
     801  agagccagtg gagaagaagg tcatcacgaa agcttgtgtg agcatgagtg
     851  acaacaacta caaatatcca tgctgttgcg tgacattgga tgacggcaca
     901  ccactatatt caacattcat catgccaact aagaaccatc ttgtcattgg
     951  taattcaggt gatccaaagt ttttagactt gcccacagac attagcacac
    1001  aaatgtatat agctaaatca ggatattgtt acattaacat attcttagct
    1051  atgcttgtaa atgtggatga accagatgct aaggatttca ccaagaaagt
    1101  tagggacatc atagtaccag atctgggtga gtggccaaca ctgattgatg
    1151  tagcaacgag ctgtagcctc cttagtgcat tctatcctgc tacgagtgct
    1201  gctgagttgc cacggatcct gatagatcat gatctcaaaa caatgcatgt
    1251  gattgattca tatggttcgc tcaatacagg gtatcatgtg ctaaaagcaa
    1301  atacagtgag acagttgatc cagtttgcaa gcaactcact ggactctgag
    1351  atgaagcatt atcgagttgg g