Sequence of DPV Garlic virus X
Garlic virus X isolate SW3, complete genome.
ACC No: JQ807994
Dated: 2013-04-02 | Length: 8428 | CRC: 197470364
ID JQ807994; SV 1; linear; genomic RNA; STD; VRL; 8428 BP.
XX
AC JQ807994;
XX
DT 02-APR-2013 (Rel. 116, Created)
DT 02-APR-2013 (Rel. 116, Last updated, Version 1)
XX
DE Garlic virus X isolate SW3, complete genome.
XX
KW .
XX
OS Garlic virus X
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC Alphaflexiviridae; Allexivirus.
XX
RN [1]
RP 1-8428
RA Wylie S.J., Jones M.G.K.;
RT "Viruses of Garlic in Western Australia";
RL Unpublished.
XX
RN [2]
RP 1-8428
RA Wylie S.J., Jones M.G.K.;
RT ;
RL Submitted (20-MAR-2012) to the INSDC.
RL Plant Virus Group, WA State Agricultural Biotechnology Centre, Murdoch
RL University, South Street, Perth, WA 6150, Australia
XX
FH Key Location/Qualifiers
FH
FT source 1. .8428
FT /organism="Garlic virus X"
FT /host="garlic"
FT /isolate="SW3"
FT /mol_type="genomic RNA"
FT /country="Australia"
FT /collected_by="Stephen Wylie"
FT /collection_date="Aug-2011"
FT /db_xref="taxon:150284"
FT 5'UTR 1. .167
FT CDS 168. .4802
FT /codon_start=1
FT /product="replicase"
FT /note="RdRp"
FT /protein_id="AFV61767.1"
FT /translation="MTTVQKLLDQISDPNARAAYSQDCLSAAKNAATKAMTIAPYAVTQ
FT TEALTLERIGITTSPFATTSHTHAADKIIENDCLEIIGRYLPKGSVTLIQLKRAKLHLL
FT KRGPNTDVFQNYCHEPKDVLRFGLTNPHVCPVVNTSCAVISDTLHFMSSQQVWTLFKRN
FT PQLQRLYGTLVLPIEALNKLPSLFPEIYKLEYYDNHFAYMPGGHGGGAYIHSYGTLKWL
FT STAQIGTESNHLSIEKIETKGAHHIMLIQRRRPELPWPLPPLWVFHASDYVRLPEIFYP
FT SEANVQRAYPHIFIKRLQLYCFSVKAVSLRDIFAKIRQVIPTEELSRFSTADLIRLANY
FT LLFITGMQQTSDYQSPLMESLLGKLCLSIRARVREFFQNLMGKSSYAALLTVTDVRPVY
FT FTTKPIRRPICGQPWFDEAEMESKPETPTITGYPNPSPDDLDLLAEFEQYERATTEEDC
FT STSRTNVTSNRAQNTQQRAEHVTSEKLEHSNDEFHSQITKSQGENDHTRSTEQSRPTNT
FT CENFADDEDMVDGHITDWTDSDSDHDDADSETHPETNLSQTIQDDMLPDVSDLPELESI
FT ADEQGDAEDNEDSANDQADHCNTTHDTETDKPATTPVEVESSPKITSRVDLTPLDSDTV
FT EILKLHGFTNYKPQHDGDFQIAPVFYNHQACQLPLYDGITNSVQSKFIEMAHALKRNCY
FT NYTLDAKRATAFMSDVKNNLTGLVLPKLDRDLLTSWVALSENACRKVGLIVIHGAGGAG
FT KSRALQEILRSNSIDTNEVNIIVPTINLAVDWKKKMPKIDPRRVMTFEKACEREGKSVV
FT IMDDYGKLPAGYIDAYLAIKFNVEIVILTGDQRQSVFHNDRKDSQIALLTSNTAHFKRY
FT CDYYLNATHRQPRRLANPIRVHAEREVGGAIKHSTLIPTHAMTLVPAFRSQSLLTDLGR
FT QAMTYAGCQGLTLPHLTIVLDKDTPLCSDEVLYTALSRASETITFVNTYSSNKDFLDKL
FT DSTPYLKTLISGVREDEQAGAEIPPPEPEVRDAPTKTHIPVANNNVQLESKIETMEDKD
FT TRELWSGEEKTNLMQTQDPVIQLFPHQQAKDEALFKITINERIKLANPETNCKALKETL
FT NTGNLLFEAYANFMNVPRETQPFDKRLWAHCRQLALRTYLSKPTSNLQQGAQRQDPDFP
FT ENAIALFNKSQWVKKLEKVGCKFKAGQTISAFKQSTVLLTTTMALYLRKKRESHQPDNI
FT FVMCEKTPEQFNSFVLTKWDFSRPNYTSDYTQYDQSQDSAFLNFELRKAKHFGLPDEIV
FT DFYAFIKTHAKTFLGNLAVMRLSGEGPTFDANTECNIAYDALRFQLDSTVNACYAGDDL
FT VRDKACDERPGWKYAEPLFSLKAKPLVTSKPDFCGWRLTKYGIVKSPVQLYQSLQLALR
FT LGKVEEVKRSYAIDYLFAYRLGDQLYDIFDEDELAKHQLVTRTLIKKGMQPPSSGEHLP
FT TFHVTSDRLIRDPKAIKVLSYESDRIIVPTDVIEDHFTSASRTDRDDMTAESNRRASGL
FT CTPVNPRNSAGTLLTDMFPSIATL"
FT CDS 4914. .5618
FT /codon_start=1
FT /product="TGB1 protein"
FT /note="triple gene block 1"
FT /protein_id="AFV61768.1"
FT /translation="MKTQLLIQLLNNFGFHRTAEPIKEPLIVHGVPGCGKSTLIKTLIT
FT HQSVAAYTLGVPYGKTLAHPGVLNPPTLEDILDFETRILDEYQLGAKEDFKTFNILFGD
FT PFQGDTHLPAHFIKSLSHRVPRQICQFLNSLQYEIQGEKEGVLNHLPVFKANSTGPKGV
FT VLHLGPISCQLTRTYRVASKTPAEVQGLEFKEVTLVYHSSELIANPNAFFIAATRACDC
FT LNLITDKVPHDS"
FT CDS 5615. .5935
FT /codon_start=1
FT /product="TGB2 protein"
FT /note="triple gene block 2"
FT /protein_id="AFV61769.1"
FT /translation="MSFTPPPDHSKSFLALAAGAAAGLLIFTLRSNQLAPVGDNTHQLP
FT HGGQYRDGNKFVNYNGPNTGASSHSIWWPAIAAITLTVVIHFLSSTRRRICLRCTESTL
FT PH"
FT CDS 6037. .7107
FT /codon_start=1
FT /product="40 kDa protein"
FT /protein_id="AFV61770.1"
FT /translation="MTHATAWHLYETQNYIVDHINMILSQIALRVSDTRGAATQQQQFL
FT DHKIREIVPALDAITTSISARTQNNAQNIQNRRASDQSTELRQSTINRTFFTNLNAALD
FT TTSNLINHVPPTRYALPSVSLPLDELYGLLHALHKNSLEWLTHISHDTEQIINKLNNIE
FT TILLDEVRTNSRKIDTVLGKLVDVETHLGKIADSNFERELAKSLASIETQVQELHAKFR
FT DMNHQGSSTLGGSPSTSSIPETSVINSLLPTFNPEHPTARCRAYGSVEFGGAVLQIPMD
FT VRGRRASTALRLSVMYTPKREETTVKYKLFDDGALLFTEELSTQHKFMQPFSDSLALLH
FT SKCPNFLYKIRDEVLC"
FT CDS 7152. .7883
FT /codon_start=1
FT /product="coat protein"
FT /protein_id="AFV61771.1"
FT /translation="MGDRNQGINTNQGLNAQVQGDGTSNQNQRPNRNPTPRPQADLNAQ
FT NNVMPSENDLAAIASDVTSNSVATQEIIREILSTLQARRPNATPKDLFSLAWACYHNGS
FT SRFTTMTTDAPCGMPHAELKDLVEDYCTLRQFCGYYAKTCYVTGKQQNKPPANWSRKGF
FT QEESKFAAFDFFNAVMSDSSPTPPGGMRFKPTHEEIVGHSMNAKMSIIESRKTSNMVST
FT RADLLAQQQIHEAPKPLMLTF"
FT CDS 7894. .8277
FT /codon_start=1
FT /product="nucleotide binding protein"
FT /protein_id="AFV61772.1"
FT /translation="MHRYDFNLLACLHFSKPTLPNDVRIIIYNLTSNSRKLGRKAQQNK
FT PFTGTSKCAARRRAKRYGRCFDCGALLEANHVCKLFTTRSNSDCLSVIHEGPAKLYAER
FT SFRKSSFAEQLIRNDLQLMKLYK"
FT 3'UTR 8278. .8428
XX
SQ Sequence 8428 BP; 2612 A; 2133 C; 1771 G; 1912 T; 0 other;
jq807994 Length: 8428 02-APR-2013 Type: N Check: 2885 ..
1 aagtagggag atcagagtgg atatacagct aaacgaatgg atcaatagcg
51 aagaatataa tcatcgctga ggaaatcaaa caaccacaaa ctaaactaca
101 cagaacaaac ctcaacacta cttgataagg atacttagcg aagccctgaa
151 catttagccc ttgaggtatg acaactgtgc agaagttact cgatcaaatc
201 tccgatccca acgctagagc ggcttattca caagactgtc tttctgctgc
251 caaaaatgcg gcaacgaaag cgatgactat tgccccctac gcagtcacac
301 agactgaagc gcttactttg gagcgcattg ggatcaccac ttcacctttt
351 gccacgactt cccacactca tgctgccgat aaaattattg aaaatgattg
401 cttagaaatt atcggtagat acctgccaaa ggggtccgtc acacttatac
451 aactcaaacg ggccaagtta cacttactga aaagaggacc taacacagac
501 gtcttccaga actattgtca tgagcctaaa gacgtactca gatttgggct
551 aacaaacccc catgtatgcc ccgtggtgaa caccagctgt gcggtaatat
601 ctgacacact ccattttatg tcgtcacaac aagtatggac actgtttaag
651 cgcaacccac aactacaaag attgtatggt actctagtgc tgccgattga
701 agcactcaat aaactaccca gcctattccc tgaaatttac aaattagagt
751 actatgacaa tcacttcgcg tatatgcccg gtggtcatgg aggcggagcc
801 tatattcact cttatggcac acttaaatgg ctcagcacag cacaaatagg
851 tacggagagc aaccacctta gcatcgagaa gattgaaacc aaaggtgcac
901 accacataat gctgatacag cggaggagac cagaattacc atggccacta
951 ccgccactct gggttttcca cgcttctgac tatgtgagac tacctgaaat
1001 attctacccc agtgaagcca acgtgcagag agcatacccc catatattca
1051 tcaaacgtct ccagctgtac tgtttctccg tgaaagcagt gtcacttcgc
1101 gacatctttg cgaagattcg ccaagtgatc cccacagagg aattgtcgag
1151 attttcaacg gcagacttaa tacgactagc aaactacctg ctctttataa
1201 cgggcatgca acaaaccagc gactatcagt cgccgttaat ggagagctta
1251 cttggaaaac tatgcttatc catccgtgcc agagttcgcg agttcttcca
1301 gaacctgatg ggcaaatcct catacgccgc actgctcact gttacggacg
1351 tgagaccagt ctactttact accaaaccca tcaggaggcc aatatgcgga
1401 caaccgtggt ttgatgaagc ggagatggag agtaagccag aaacacccac
1451 aatcacgggc tacccgaatc catcaccaga tgacctagac ctgctcgccg
1501 aatttgaaca atatgagcga gcaacaacag aggaagactg ctccacttca
1551 agaacgaatg tcacatcaaa ccgcgctcaa aatactcaac aacgcgcgga
1601 acacgtgaca tctgagaagc tggagcacag taatgacgaa tttcattcgc
1651 aaatcacaaa gtcgcaggga gaaaatgatc acacacggtc aacggaacaa
1701 tcgcgaccca ctaacacatg cgaaaatttc gcggatgatg aggacatggt
1751 ggatgggcac atcacagact ggactgatag tgacagtgac catgacgacg
1801 cggacagtga gacacaccct gaaactaacc tttctcaaac aatccaagac
1851 gatatgctac ctgacgtgag cgacttgccc gagttggaaa gcattgcaga
1901 tgaacagggt gatgcagaag ataacgaaga ctccgcaaac gaccaagcgg
1951 accattgcaa cacaactcac gacactgaaa ctgacaaacc agctaccaca
2001 cccgtggaag tggagtcatc accaaagatc acttcacgag tggacttgac
2051 acccctcgat agtgacactg ttgagatact caagctacat ggatttacca
2101 actataaacc acaacatgat ggcgatttcc aaatagcccc agtgttctat
2151 aatcatcaag cgtgtcagct acctttgtac gacggaatca cgaattctgt
2201 ccaatcaaaa tttatagaga tggcgcacgc gttgaagaga aattgctaca
2251 actacacatt ggacgcaaag cgagcaacgg ctttcatgtc ggacgttaag
2301 aacaatctga ctggcttagt actgccaaag ttggaccgag atttgctgac
2351 atcatgggta gccttgtctg agaatgcgtg taggaaagtg ggtctcatag
2401 taatccatgg agcgggtgga gccgggaaaa gtagagcgtt gcaagagata
2451 ctgagaagca actcaattga cactaacgag gtcaacatca tagtgccgac
2501 aatcaatctc gctgtcgact ggaaaaagaa aatgccaaaa attgatccac
2551 gccgcgtgat gacgtttgag aaggcatgcg aacgtgaggg caaatcagtc
2601 gttataatgg atgattatgg caaactacca gctggatata ttgatgcata
2651 tctcgcaatc aaattcaatg tagaaatagt catccttact ggcgaccaga
2701 ggcagtctgt tttccataat gataggaaag attcgcaaat tgccttgctg
2751 acgtccaaca ctgctcattt caagagatac tgcgactatt acctcaatgc
2801 tacgcacaga caaccgcgaa gactagctaa cccgattaga gtgcacgcag
2851 agagagaagt gggaggagcc atcaaacatt ccacgcttat ccccacacac
2901 gccatgacac tcgtcccagc ctttcgaagc caatcacttc ttacagattt
2951 gggcagacaa gcgatgacgt atgccggatg ccaggggctt actttaccac
3001 acctcacaat agttttagat aaagacacac ccctttgctc tgatgaagtg
3051 ttgtacactg ccttgtcaag agcttcagaa acaatcacct ttgtcaacac
3101 atactcgagc aacaaggatt tccttgacaa gttagattcc accccatacc
3151 tcaaaacact aatctccgga gtgagagaag atgaacaagc gggggcggaa
3201 attccaccac cagagccaga ggtacgagac gccccaacaa agacacatat
3251 cccagtggct aataacaatg tgcagctcga gagtaaaata gaaactatgg
3301 aagacaagga cactagggag ttgtggagtg gggaagagaa aacaaatctc
3351 atgcaaacac aagaccccgt aatccagctg tttccccacc agcaggccaa
3401 agatgaagcg ctctttaaaa tcacaataaa tgagagaatt aaattggcga
3451 atcctgagac aaactgcaaa gctctcaaag aaaccctcaa cactggaaac
3501 ttgctgtttg aggcttacgc caatttcatg aatgtgccgc gggaaactca
3551 accattcgac aaaagacttt gggctcactg tagacaactt gctctacgca
3601 catatctctc aaaaccaacg tcaaacttgc aacaaggagc gcagcggcag
3651 gatccagact ttcccgagaa cgcaattgcg ctgttcaata agtcacagtg
3701 ggttaagaaa cttgaaaagg ttggatgcaa atttaaggcc gggcaaacta
3751 tatcagcctt caaacagtca actgtcctac tcacaaccac catggctctg
3801 tacttgagga agaagcgaga aagtcaccaa cctgacaata tctttgtgat
3851 gtgcgaaaag acgccagagc aattcaattc gttcgttctc accaaatggg
3901 atttctcaag gccgaactac acatccgact acacgcagta cgaccaatcg
3951 caagactcag cgttcctcaa tttcgaatta aggaaagcta aacactttgg
4001 tctaccagac gaaatcgtag acttttacgc attcatcaag acacatgcca
4051 aaacattcct ggggaaccta gcggttatga ggctcagtgg cgaagggcct
4101 acttttgacg cgaacacaga atgcaatata gcgtacgacg ccctcaggtt
4151 tcagcttgat tcaacagtga atgcctgcta cgctggggat gacttggtgc
4201 gtgataaagc atgcgacgag cgtccggggt ggaagtatgc agaaccacta
4251 ttttcattaa aagcgaaacc tctagtgact agtaagccag acttttgcgg
4301 atggcggttg accaagtatg gaattgttaa atctccagta cagttgtatc
4351 aatcattgca actagcacta cgacttggca aggttgagga agtcaagcga
4401 agctatgcca tagactacct gtttgcgtat cgacttggag accagcttta
4451 cgacatattt gacgaggacg aattagcgaa acaccagctg gtcacaagga
4501 ccttgatcaa gaaaggcatg cagccaccca gttcaggaga gcatttacca
4551 actttccatg tgacatcaga ccggctcata cgagacccga aagcaattaa
4601 agtgttgagt tatgaatcag atagaatcat agtccccact gacgttattg
4651 aagatcactt cacatcagcc agcagaacgg atcgcgacga catgacggct
4701 gaaagtaata gacgggcttc cggactgtgc actccggtca accccagaaa
4751 tagtgccggc actctgttga cggacatgtt ccctagtatt gccacacttt
4801 aacttattcg acaattagta ctaacattaa ataggttaac ttactgatag
4851 tacagtcaac ttacactacg aatagtagcg tgctgattag ttatgtttaa
4901 ctttgtgtgt gaaatgaaaa ctcagctgct gatacaattg ttaaataact
4951 tcgggttcca ccgcaccgca gagccaatta aagaacctct aattgtacac
5001 ggggtgccag gctgtggtaa atcgacactt ataaagactc tgatcaccca
5051 ccaatccgtg gcagcctata ctttaggagt tccgtacggg aagacacttg
5101 cacaccccgg cgtactgaat ccgcccaccc ttgaagacat tctagatttc
5151 gaaaccagaa tcttggacga ataccagcta ggtgccaaag aagacttcaa
5201 aaccttcaat atattgtttg gcgatccttt ccagggtgac acacatttac
5251 ctgcgcattt catcaaatct ttatctcaca gagtgccacg acagatttgc
5301 caattcctaa attccttaca gtacgagata cagggtgaaa aagagggggt
5351 actcaaccat ttacctgtct tcaaggccaa tagtacggga cccaaaggag
5401 ttgttctaca tcttggcccc atttcttgcc agctcacacg cacatacaga
5451 gtagcgtcga aaactccggc tgaggtgcag gggcttgagt ttaaggaagt
5501 cacacttgtt tatcattcaa gcgaattaat agcaaatcca aacgctttct
5551 ttattgcggc tacacgggcg tgtgattgct taaacctcat aactgacaag
5601 gttccacacg attcatgagc ttcactcccc cgccagatca tagcaaatca
5651 tttttagcat tagccgcagg ggcagccgcg ggtttgttaa tttttaccct
5701 ccgaagcaac cagttagcgc cagttggaga caacactcac cagctgccac
5751 acggaggcca ataccgagac ggcaacaaat tcgtgaacta caacggtccc
5801 aacactggcg cctcttcaca cagtatctgg tggccagcaa tcgccgcaat
5851 cacactcact gttgtcatac atttccttag cagcactcgc cgccgcattt
5901 gtttacgctg tactgaatct actctacccc actaaaagtg ggtgtgtcat
5951 aactataact ggttcgaccg tacaagtctc tgaatgcccc ttagaacaag
6001 ttcctgaaat tgttaaagct tttgcctgga gcgcccatga cgcacgccac
6051 cgcctggcat ctttatgaaa cgcagaacta tattgttgat cacatcaaca
6101 tgatacttag tcagattgca cttagagtca gcgacacgcg tggtgcagcc
6151 acacaacagc agcaattcct ggaccataaa attagagaaa tagttccggc
6201 tcttgacgcg ataacgactt caatctctgc tagaacacaa aacaatgccc
6251 agaacattca gaacaggaga gcatctgatc aaagcactga acttcgccag
6301 agcacaatca acagaacatt cttcacaaat ttgaatgcag cgcttgacac
6351 caccagcaac ttgattaatc atgttccacc gaccagatac gctctgccgt
6401 ccgtttcact tcctttagat gaactgtacg ggttattgca tgcgcttcac
6451 aagaacagtc tggagtggct gacgcacatt agtcatgaca cggagcaaat
6501 aatcaacaaa ttgaacaaca ttgagaccat tttgctcgac gaagtgcgca
6551 ccaatagccg gaagattgat actgtccttg gaaaactagt agacgtggag
6601 actcacctgg gcaagatcgc agattcaaac ttcgaacgag agttggccaa
6651 gtctctagcc tccattgaga cgcaagttca agaactgcac gctaaatttc
6701 gagatatgaa tcatcaagga agctccacac ttggtggtag tccaagcaca
6751 tcatctatcc cggaaacatc ggtcattaac tctttattac caactttcaa
6801 tcctgaacat cccacagcta gatgccgggc atacggaagt gtagaattcg
6851 gcggcgccgt tctccagatc cctatggacg ttcgaggccg gcgtgcaagc
6901 accgcattac gtttgtccgt catgtacact ccaaaacgag aggagaccac
6951 cgttaaatac aagttattcg acgacggcgc actactcttc actgaagaac
7001 tgagcacaca gcacaaattt atgcaaccat tcagcgactc tttagctctc
7051 ctgcattcaa aatgtccaaa ttttctttat aagatcagag atgaagtact
7101 atgttaagtt ctaaattagg ccgaattagt tagaacgaac acaaacacac
7151 gatgggtgac cggaaccaag gaataaatac caaccaggga ctcaatgccc
7201 aagtgcaagg tgatggaaca agcaatcaaa atcaacgccc caataggaat
7251 ccaactcctc gaccccaagc tgacttaaac gcccagaaca atgtaatgcc
7301 ttccgaaaat gacttagcag cgatagcaag tgatgtaact tccaactcag
7351 tagccactca ggagattatc cgcgaaatcc tcagtaccct tcaagcaagg
7401 cgtcccaatg caacacccaa agacttattt tcgcttgcgt gggcatgcta
7451 ccacaatgga tcatcacgat tcacgacaat gaccactgac gcaccttgtg
7501 gcatgcctca cgcggagctc aaagacctcg tcgaagacta ctgtacgctg
7551 agacaattct gtggttacta cgccaaaaca tgctatgtca cgggcaagca
7601 gcaaaataag ccaccagcca actggtctcg aaaaggtttc caagaagaat
7651 caaaattcgc tgcctttgat ttctttaatg ctgtgatgag cgactcgtcc
7701 ccaacaccac ctggcggcat gcgatttaaa ccaacacatg aggagattgt
7751 gggacactcc atgaatgcga agatgtccat cattgagtcg cgtaaaacct
7801 cgaacatggt atccactcgc gctgatctgt tggcccaaca gcaaatccat
7851 gaagctccga aacctctcat gctcacattc taaattaaac taaatgcatc
7901 gctacgactt caacttgctc gcctgtcttc acttttcaaa accaacactt
7951 ccaaacgacg ttagaataat aatatataat ttaacttcca atagtaggaa
8001 attaggacgt aaagcacaac aaaataaacc tttcacaggg acttccaaat
8051 gtgccgcccg ccgcagagcg aaacgctatg gccgatgctt tgactgcggt
8101 gcactgctgg aagccaacca tgtatgtaaa ttatttacaa ctcgttccaa
8151 ttctgactgc ctgagcgtca ttcatgaagg acccgctaag ctatatgctg
8201 aaaggtcttt ccgtaaatca tctttcgctg agcagctcat tcggaatgac
8251 ttgcagttaa tgaaattata taaataggct ctgcccgagc ctcccactgg
8301 gtttacaggg ctctggacat ggacaaagac acccatgttt gttgatatta
8351 ctaaacttac tttgtaacaa catttgtcca cgtccagagc cctgtaaacc
8401 cagtgggagg ctcgggcaga gcctattt