Sequence of DPV Barley yellow dwarf virus-PAV

Barley yellow dwarf virus-PAV isolate PK1 coat protein gene, partial cds.

ACC No: JQ811488

Dated: 2012-05-21 | Length: 603 | CRC: 801366272

                
ID   JQ811488; SV 1; linear; genomic RNA; STD; VRL; 603 BP.
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AC   JQ811488;
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DT   21-MAY-2012 (Rel. 112, Created)
DT   21-MAY-2012 (Rel. 112, Last updated, Version 1)
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DE   Barley yellow dwarf virus-PAV isolate PK1 coat protein gene, partial cds.
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KW   .
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OS   Barley yellow dwarf virus-PAV
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   Luteovirus.
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RN   [1]
RP   1-603
RA   Qadir A., Hameed S., Munir A., Abbas M.F.;
RT   "Sequence analysis of BYDV-PAV coat protein (CP) gene";
RL   Unpublished.
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RN   [2]
RP   1-603
RA   Qadir A., Hameed S., Munir A., Abbas M.F.;
RT   ;
RL   Submitted (22-MAR-2012) to the INSDC.
RL   Crop Disease Research Program, Institute of Plants and Environmental
RL   Protection, Park Road, Islamabad, Islamabad 44000, Pakistan
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FH   Key             Location/Qualifiers
FH
FT   source          1. .603
FT                   /organism="Barley yellow dwarf virus-PAV"
FT                   /host="oat"
FT                   /isolate="PK1"
FT                   /mol_type="genomic RNA"
FT                   /country="Pakistan"
FT                   /collected_by="Abdul Qadir"
FT                   /collection_date="04-Apr-2011"
FT                   /identified_by="Abdul Qadir, Shahid Hameed, Muhammad Fahim
FT                   Abbas"
FT                   /proviral
FT                   /PCR_primers="fwd_name: bpcf3, fwd_seq:
FT                   atgaattcagtaggccgtaga, rev_name: bpcr2, rev_seq:
FT                   ctatttggccgtcatcaaac"
FT                   /db_xref="taxon:12040"
FT   CDS             1. .>603
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="AFJ95145.1"
FT                   /translation="MNSVGRRGPRRANQNGPRRRRRRTVRPVVVVQPNRAGPRRRNGRR
FT                   KGRRGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI
FT                   TSIRVEFKSHASATTAGAIFIELDTACKQSALASYINSFTISKTASKVFRAEAINGKEF
FT                   QESTIDQFWMLYKANGTTADTAGQFIITMSANPMTAKS"
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SQ   Sequence 603 BP; 175 A; 167 C; 144 G; 117 T; 0 other;

jq811488 Length: 603  21-MAY-2012  Type: N  Check: 4768  ..

       1  atgaattcag taggccgtag aggacctaga cgcgcaaatc aaaatggccc
      51  aagaaggagg cgccgtagaa cagttcggcc agtggttgtg gtccaaccca
     101  atcgagcagg acccagacga cgaaatggtc gacgcaaggg aagaagaggg
     151  gcaaatcctg tatttagacc aacaggcggg actgaggtat tcgtattctc
     201  agtcgacaac cttaaagcca actcttccgg ggcaatcaaa ttcggcccca
     251  gtctatcgca atgcccagcg ctttcagacg gaatacttaa gtcctaccat
     301  cgttacaaga tcacaagtat ccgagttgag tttaagtcac acgcgtccgc
     351  cactacggcc ggcgctatct ttattgaact cgacaccgcg tgcaagcaat
     401  cagccctggc tagctacatt aattccttca ccatcagcaa gaccgcctcc
     451  aaggtcttcc gtgccgaagc aattaacggg aaggaattcc aggaatcaac
     501  gatagaccaa ttctggatgc tctacaaggc caatggcacc actgctgaca
     551  ccgcaggaca attcatcatc acgatgagtg ccaatccgat gacggccaaa
     601  tcg