Sequence of DPV Turnip yellows virus
Turnip yellows virus isolate WA-1, complete genome.
ACC No: JQ862472
Dated: 2012-12-12 | Length: 5698 | CRC: -209467518
ID JQ862472; SV 1; linear; genomic RNA; STD; VRL; 5698 BP.
XX
AC JQ862472;
XX
DT 12-DEC-2012 (Rel. 115, Created)
DT 12-DEC-2012 (Rel. 115, Last updated, Version 1)
XX
DE Turnip yellows virus isolate WA-1, complete genome.
XX
KW .
XX
OS Turnip yellows virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
XX
RN [1]
RC Publication Status: Available-Online prior to print
RP 1-5698
RX PUBMED; 23089850.
RA Wylie S.J., Li H., Dixon K.W., Richards H., Jones M.G.;
RT "Exotic and indigenous viruses infect wild populations and captive
RT collections of temperate terrestrial orchids (Diuris species) in
RT Australia";
RL Virus Res. 0:0-0(2012).
XX
RN [2]
RP 1-5698
RA Wylie S.J., Jones M.G.K.;
RT ;
RL Submitted (29-MAR-2012) to the INSDC.
RL Plant Virology, WA State Agricultural Biotechnology Centre, Murdoch
RL University, South Street, Perth, WA 6150, Australia
XX
FH Key Location/Qualifiers
FH
FT source 1. .5698
FT /organism="Turnip yellows virus"
FT /isolate="WA-1"
FT /mol_type="genomic RNA"
FT /country="Australia"
FT /collected_by="Stephen Wylie"
FT /collection_date="2011"
FT /db_xref="taxon:131083"
FT 5'UTR 1. .31
FT CDS 32. .781
FT /codon_start=1
FT /product="hypothetical protein"
FT /note="P0"
FT /protein_id="AFZ39158.1"
FT /translation="MQFVAHDNFHTLQIKKVRFLHPQQEAYLLAGLLLNIKQFVQAIQE
FT RNNEFNIDIFLRSLLYQLPFHLGSCFHDAPRELIPATEPELCAWFSLQTGYTPTSTSGR
FT INLHMPGTKTSRRRIIQRSLASDFSEKLKRFPECLFVSLEFFQRFLSTWTKDAERRIFF
FT SCREIPVGSNTLVELANLGELLRVMVVGEQFHNSRLLSRLAVHCYKIYGEDGFISFWRI
FT ADLDHLDRFLTPEEILFSSSVYTEMFV"
FT CDS join(174. .1553,1553. .3277)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="P1-2 fusion protein"
FT /protein_id="AFZ39160.1"
FT /translation="MNSTLIFFFALCFISFLSTSEAASTMLLESSYLPLNQSCVPGFLY
FT KRDTLPPPLQGVLTYTCQEPRPLVEESYNDLLRAISQKSSSDFQNACSLALSFSSDFYQ
FT HGLKTLKDVSFLAVEKFLWGLTRLWSSLILASFSALWWLVSNFTTPVFCLALLYTVTRF
FT MVKMVLFLFGGLPIWIISIAFSLLKKSFSALRSTPKCLYEKAIDGFKSFTIPQSPPKSC
FT VIPITHASGNHAGYASCVKLYNGENALMTATHVLRDCPNAVAVSAKGLKTRIPLAEFKI
FT IAKSDKGDVTLLRGPPNWEGLLGCKAANVITATNLAKCKASIFSLDRDGWVSNYAEIVG
FT SEGTDVMVLSHTEGGHSGSPYFNGKTILGVHSGASAIGNYNLMAPIPSIPGLTSPTYVF
FT ETTAPQGRVFAQEDITAIENLYAEAVRKADPMSFKSITGKNWADMVEDEDIFFESKEDL
FT PGKRSARHRPRTKRRRQLHPKDKQRRWKRDDGENNLISSGEDKSREHREESDRRDFRES
FT DENSKTPPQKSPKETAGEFEGYLSSLYHWEVPTTPCEIPGFRHCGKLPQYYHPKQKEES
FT SWGKTLVGNNPALGEKTSGFGWPKFGPEAELKSLRLQASRWLERAQSAKIPSDAERERV
FT IQKTVDVYYPCQTNGPTATRGGALTWNNFMIDFKQAVFSLELDAGIGVPYIAYGKPTHR
FT GWVEDQKLLPVLARLTFIRLQKMLEVNFEDMGPEELIQSGLCDPIRLFVKGEPHKQAKL
FT DEGRYRLIMSVSLVDQLVARVLFQNQNKREIALWRAIPSKPGFGLSTDEQVLDFVKSLA
FT RQVGTTTTDVVANWKDYLTPTDCSGFDWSVANWMLEDDMIVRNRLTIDINPATERLRSC
FT WLRCVSNSVLCLSDGTLLAQTHPGVQKSGSYNTSSSNSRIRVMAAFHTGAAWAMAMGDD
FT ALESNPADLEGYKNLGFKVEVSGQLEFCSHVFRAPDLALPVNENKMIYKLIYGYNPGSG
FT NAEVVSNYLAACFSVLNELRHDPASVELLYSWLVDPVLPQKIPGE"
FT CDS 174. .1994
FT /codon_start=1
FT /product="P1 protein"
FT /protein_id="AFZ39159.1"
FT /translation="MNSTLIFFFALCFISFLSTSEAASTMLLESSYLPLNQSCVPGFLY
FT KRDTLPPPLQGVLTYTCQEPRPLVEESYNDLLRAISQKSSSDFQNACSLALSFSSDFYQ
FT HGLKTLKDVSFLAVEKFLWGLTRLWSSLILASFSALWWLVSNFTTPVFCLALLYTVTRF
FT MVKMVLFLFGGLPIWIISIAFSLLKKSFSALRSTPKCLYEKAIDGFKSFTIPQSPPKSC
FT VIPITHASGNHAGYASCVKLYNGENALMTATHVLRDCPNAVAVSAKGLKTRIPLAEFKI
FT IAKSDKGDVTLLRGPPNWEGLLGCKAANVITATNLAKCKASIFSLDRDGWVSNYAEIVG
FT SEGTDVMVLSHTEGGHSGSPYFNGKTILGVHSGASAIGNYNLMAPIPSIPGLTSPTYVF
FT ETTAPQGRVFAQEDITAIENLYAEAVRKADPMSFKSITGKNWADMVEDEDIFFESKEDL
FT PGNGVRGTVRGPNGEGSFIPKTNNVDGKEMMEKIISSLVGKINLENIEKKVIEEISAKA
FT MKTPKPRRRRAPKKQPESSKDTSPRSTTGKYQPPHVRSPASATAASCPNTTTPSKKKNP
FT AGGKPSSGTIPRWVRKQAASAGPSSAPKQN"
FT misc_feature 3278. .3480
FT /note="intergenic NCR"
FT CDS 3481. .5268
FT /codon_start=1
FT /transl_except=(pos:4087. .4089,aa:OTHER)
FT /product="truncated P3/P5 read-through protein"
FT /protein_id="AFZ39163.1"
FT /translation="MNTVVGRRTINGRRRPRRQTRRAQRSQPVVVVQTSRTTQRRPRRR
FT RRGNNRTGGAVSTRGASSSETFVFSKDNLAGSSSGAITFGPSLSDCPAFSNGILKAYHE
FT YKISMVILEFVSEASSQNSGSIAYELDPHCKLNSLSSTINKFGITKPGRRTFTASYING
FT TEWHDVAEDQFKILYKGNGSSSIAGSFRITIKCQFHNPKXVDEEPGPSPGPSPSPQPTP
FT QKKYRFIVYTGVPVTRIMAQSTDDAISLYDMPTQRFRYIEDENMNWTNLDSRWYSQNNL
FT KAIPMIIIPVPQGEWTVEISMEGYQPTSSTTDPNKDKQDGLIAYNDDLNEGWNVGIYNN
FT VEITNNKADNTLKYGHPDMELNSCHFNQGQCLERDGDLTCHVTTTGDNASIFIVGPAVQ
FT KQSKYNYAVSYGAWTDRMMEIGMIAVALDEQGSSGSAKKVKRPKRAGHSMAVSTWETIN
FT SPEKENSEQLETSQRQDFKTPLMVVGSSDKLDVEEGGLPLPAEEDIPDFIGNDPWFNIS
FT TKEPQEEEAMSSRSGLRPQLKPPGLPKPQPVRTIRSFDPTPDLVEAWRPNVNPGPDILK
FT KMWQLPLSLPEVLLKTAVL"
FT CDS 3481. .4089
FT /codon_start=1
FT /product="coat protein"
FT /note="CP"
FT /protein_id="AFZ39161.1"
FT /translation="MNTVVGRRTINGRRRPRRQTRRAQRSQPVVVVQTSRTTQRRPRRR
FT RRGNNRTGGAVSTRGASSSETFVFSKDNLAGSSSGAITFGPSLSDCPAFSNGILKAYHE
FT YKISMVILEFVSEASSQNSGSIAYELDPHCKLNSLSSTINKFGITKPGRRTFTASYING
FT TEWHDVAEDQFKILYKGNGSSSIAGSFRITIKCQFHNPK"
FT CDS 3512. .4039
FT /codon_start=1
FT /product="movement protein"
FT /note="MP"
FT /protein_id="AFZ39162.1"
FT /translation="MEEDDHGGKHDALSALSQWLWSKPLGQHNADLDDDEEVITGQEEL
FT FLPEEQAQARHLFSQKTISREVPAEQSRSGRVYQTARHSLMEYSRPTMSIKSRWSFWSS
FT SPKPLPKIPVPSLTSWTHTVNSTPFPQLSTNSGSQSPGGGRLQRLTSTGRNGTTLPRTN
FT SRSSTKAMVLHR"
FT 3'UTR 5269. .5698
XX
SQ Sequence 5698 BP; 1639 A; 1451 C; 1333 G; 1275 T; 0 other;
jq862472 Length: 5698 12-DEC-2012 Type: N Check: 2680 ..
1 acaaaagaaa ccaggaggga atcctaagtt gatgcaattt gttgctcacg
51 acaactttca tactttacaa atcaagaaag tccgattcct ccacccgcaa
101 caagaagcat atcttctagc aggtttattg cttaacataa aacaatttgt
151 acaagcaatc caggagcgta acaatgaatt caacattgat atttttcttc
201 gctctctgct ttatcagctt cctttccacc tcggaagctg cttccacgat
251 gctcctcgag agctcatacc tgccactgaa ccagagctgt gtgcctggtt
301 ttctttacaa acgggataca ctcccacctc cacttcaggg cgtattaact
351 tacacatgcc aggaaccaag acctctcgta gaagaatcat acaacgatct
401 cttgcgagcg atttctcaga aaagctcaag cgatttccag aatgcttgtt
451 cgttagcctt gagtttttcc agcgatttct atcaacatgg actaaagacg
501 ctgaaagacg tatctttttt agctgtcgag aaattcctgt ggggtctaac
551 acgcttgtgg agctcgctaa tcttggcgag cttctccgcg ttatggtggt
601 tggtgagcaa tttcacaact cccgtcttct gtctcgcctt gctgtacact
651 gttacaagat ttatggtgaa gatggtttta tttctttttg gaggattgcc
701 gatttggatc atctcgatcg ctttctcact cctgaagaaa tccttttcag
751 ctcttcggtc tacaccgaaa tgtttgtatg aaaaggctat agacggtttc
801 aagagtttta ctatcccgca aagccctcca aaatcttgcg tgattcccat
851 cacccacgca agcggaaacc acgctggata cgccagctgt gtcaagctgt
901 acaacggaga aaatgccttg atgacggcaa ctcacgttct acgtgactgc
951 cccaacgcag tggctgtttc cgccaaaggg cttaaaactc ggattccact
1001 cgctgaattc aaaataattg cgaaatccga taaaggtgat gtcaccctcc
1051 ttcgcggccc ccccaattgg gaaggactat tgggctgcaa ggcggccaac
1101 gttataacgg ctaccaacct agcaaaatgc aaagcgtcta tattctctct
1151 cgacagagat ggctgggtta gcaactacgc cgaaatcgtt ggctcggaag
1201 gcacagacgt aatggttctg agccatacag aaggaggaca ctccggaagc
1251 ccctacttta atggcaaaac cattttaggg gttcattcag gtgccagcgc
1301 tattggaaat tacaatctaa tggcaccgat cccatccatc cccgggctca
1351 caagtcccac atatgtgttt gaaaccaccg caccacaagg aagagttttc
1401 gcacaagagg atatcactgc gatcgagaat ctctacgcag aagcagtgag
1451 gaaagcagat cccatgagtt ttaaatccat aacaggaaag aactgggctg
1501 atatggtgga agatgaagac atcttcttcg aaagcaaaga agatcttccg
1551 ggaaacggag tgcgcggcac cgtccgcgga ccaaacggag aaggcagctt
1601 catcccaaag acaaacaacg tcgatggaaa agagatgatg gagaaaataa
1651 tctcatctct agtggggaag ataaatctcg agaacatcga gaagaaagtg
1701 atagaagaga tttccgcgaa agcgatgaaa actccaaaac cccgccgcag
1751 aagagcccca aagaaacagc cggagagttc gaaggatacc tctcctcgct
1801 ctaccactgg gaagtaccaa ccaccccatg tgagatcccc ggcttccgcc
1851 actgcggcaa gctgccccaa tactaccacc ccaagcaaaa agaagaatcc
1901 agctggggga aaaccctcgt cgggaacaat cccgcgttgg gtgagaaaac
1951 aagcggcttc ggctggccca agttcggccc cgaagcagaa ctgaaaagcc
2001 tgcgtctgca ggcctcaagg tggctggaac gcgcccagtc cgcaaaaata
2051 ccctctgacg ctgagaggga gcgtgtgatt caaaagaccg tcgatgtata
2101 ctacccatgc caaactaatg gaccgacggc gactcgagga ggagcactga
2151 cctggaacaa cttcatgatt gatttcaaac aggcagtgtt ctcgctggag
2201 ctcgacgccg gaataggcgt cccctatatt gcctatggca agcccacaca
2251 ccgtgggtgg gtagaagatc agaaactcct tccagtccta gctcgattga
2301 ccttcatccg actacagaag atgttggagg ttaattttga agatatggga
2351 ccagaagaac tgatccagag cggtttgtgt gatcccatcc gattattcgt
2401 gaaaggtgag ccccacaaac aagcgaagct cgatgaaggc cgctaccgcc
2451 tcattatgag tgtttccctt gtggatcaac tggtagcccg ggttctgttt
2501 caaaatcaaa acaagcggga aattgccctg tggagggcta tccccagtaa
2551 acccggtttt ggcttgtcta cggacgagca agtgctggac tttgtgaaaa
2601 gtctggcccg tcaagtaggc actacgacaa cagacgtagt ggccaattgg
2651 aaagattact tgacgcccac ggattgctcc ggttttgact ggagcgttgc
2701 gaactggatg ctcgaagacg atatgatcgt tcgcaacaga ctcaccatcg
2751 atatcaaccc agctacagaa agattaagat cctgttggtt gagatgcgtc
2801 tcaaactcag tgctctgcct gagtgatggt acccttttag cccaaaccca
2851 cccgggcgtt cagaaaagtg ggagctacaa cacatcaagc tccaactccc
2901 ggatcagagt tatggccgcc ttccacacag gtgctgcctg ggcaatggcg
2951 atgggcgacg acgccctcga gtccaatccc gctgacctag agggctacaa
3001 aaacctaggt ttcaaagttg aggtttccgg acaactggaa ttctgctctc
3051 atgtttttag agcgccggac ctcgccctcc ctgtgaacga aaataaaatg
3101 atctacaaac tgatctatgg ctataatcca gggagcggaa acgctgaggt
3151 agtttcaaac tacttggccg cttgtttctc agttctgaac gagttgcggc
3201 atgatccagc gtccgttgaa cttctttact cgtggttagt cgacccggtg
3251 ctaccacaaa agataccagg agagtaaaga agaagaaaag tcagcttaca
3301 ttgaaatttt aaagaggttt ctgcaacagt aagagactaa agcaaaccca
3351 atagaagata caacggatta caaattccta gcaggcttcg ccgcaggctt
3401 cgtttcatcg attcccatat ccgtcatcag tatctatttt atctacctaa
3451 gaatctccaa acacgtacgc gaaattgtta atgaatacgg tcgtgggtag
3501 gagaacaatc aatggaagaa gacgaccacg gaggcaaaca cgacgcgctc
3551 agcgctctca gccagtggtt gtggtccaaa cctctcggac aacacaacgc
3601 cgacctagac gacgacgaag aggtaataac cggacaggag gagctgtttc
3651 taccagagga gcaagctcaa gcgagacatt tgttttctca aaagacaatc
3701 tcgcgggaag ttccagcgga gcaatcacgt tcgggccgag tctatcagac
3751 tgcccggcat tctctaatgg aatactcaag gcctaccatg agtataaaat
3801 ctcgatggtc attttggagt tcgtctccga agcctcttcc caaaattccg
3851 gttccatcgc ttacgagctg gacccacact gtaaactcaa ctccctttcc
3901 tcaactatca acaaattcgg gatcacaaag cccgggagga ggacgtttac
3951 agcgtcttac atcaacggga cggaatggca cgacgttgcc gaggaccaat
4001 tcaagatcct ctacaaaggc aatggttctt catcgatagc tggttctttt
4051 agaatcacca taaaatgcca attccacaac cccaaatagg tagacgagga
4101 acccggccct agcccagggc cttctccctc tccacaaccc acaccccaaa
4151 agaaatatcg tttcatcgtc tatactggtg tccccgtgac ccgtataatg
4201 gctcaatcta ctgatgatgc catctccttg tacgacatgc caactcaacg
4251 gtttcgctac atagaggacg agaacatgaa ctggacgaac ctcgattccc
4301 gatggtattc ccagaacaat ctaaaagcca tcccgatgat aataatacca
4351 gtccctcaag gcgagtggac cgtggaaatt tcgatggagg ggtatcaacc
4401 aacctcaagc accacagatc ctaataagga caaacaagat ggtctcattg
4451 catacaatga tgacctcaac gagggttgga atgtggggat ttacaacaat
4501 gtggagataa ccaacaacaa ggctgacaac actttgaagt atggccatcc
4551 agacatggaa ctcaacagct gtcattttaa ccaaggacag tgtctggaga
4601 gagatggaga tttgacttgt cacgttacaa ccactggtga caacgcctcc
4651 atctttattg ttggacccgc tgtccagaag caatcaaaat ataattatgc
4701 cgtttcatac ggagcttgga cagatcggat gatggagata gggatgatag
4751 ccgtagcact tgatgaacaa ggctcatccg gttccgcaaa gaaagtgaaa
4801 agaccaaaga gagctgggca ctccatggca gtctcaacct gggagactat
4851 aaactcaccg gagaaggaaa actccgagca actcgaaacc agtcaaagac
4901 aagactttaa aactcctctc atggttgttg ggagttccga caagctggac
4951 gtcgaagaag gaggcttgcc ccttcctgcc gaagaagaca ttcccgattt
5001 tattggaaat gacccttggt tcaacatatc aaccaaggag ccgcaggaag
5051 aagaggctat gtcgtcaagg agtggtctta gaccccagtt gaagcctcct
5101 ggcctgccaa aaccacaacc ggttagaaca attcgaagct ttgatccaac
5151 gccggatttg gttgaagcat ggcgacccaa tgtgaacccc gggccggata
5201 ttctaaagaa gatgtggcag ctgccactat cattgccgga ggttctatta
5251 aagacggccg ttctatgatt gataaacgaa ataaagcccg atgtgaaccc
5301 cgggtattct aaagaagatg tggcggctgc cactatcatc gcagggggtt
5351 ccattgaaga cggccggtct atgattgata aacgcaacaa tgccatattg
5401 accggtcgca agggttgggg ttcttccttg gcttcctcct taacaggggg
5451 aacgctcaag gcctccgcaa agtcggagaa gcttgctgca ctcacaacga
5501 gtgagagggc caaattcgaa cgaatcaaac gtcagcaagg tgccacccga
5551 gcttcagaat tcttagaaca acttctggct ggcaacaacc ccgacccacc
5601 gtcaagcccg tgacattaaa caaggaacga ctccgcaagg ataggcaacg
5651 agtgttttac gctgggataa ctgtatacta cccatgccaa actaatgg