Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus isolate FD replication-associated protein (C1) gene, partial cds; C4 protein (C4) gene, complete cds; and precoat protein (V2) and coat protein (V1) genes, partial cds.
ACC No: JQ928344
Dated: 2012-10-03 | Length: 1180 | CRC: -367134447
ID JQ928344; SV 1; linear; genomic DNA; STD; VRL; 1180 BP.
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AC JQ928344;
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DT 03-OCT-2012 (Rel. 114, Created)
DT 03-OCT-2012 (Rel. 114, Last updated, Version 1)
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DE Tomato yellow leaf curl virus isolate FD replication-associated protein
DE (C1) gene, partial cds; C4 protein (C4) gene, complete cds; and precoat
DE protein (V2) and coat protein (V1) genes, partial cds.
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KW .
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OS Tomato yellow leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-1180
RA Gharouni Kardani S., Jafarpour B., Mehrvar M., Heydarnejad J., Tarighi S.,
RA Zaki Aghl M.;
RT "Genetic diversity of TYLCV in Iran";
RL Unpublished.
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RN [2]
RP 1-1180
RA Gharouni Kardani S., Jafarpour B., Mehrvar M., Heydarnejad J., Tarighi S.,
RA Zaki Aghl M.;
RT ;
RL Submitted (10-APR-2012) to the INSDC.
RL Plant Protection, Ferdowsi University, Azadi Square, Mashhad, Khorasan
RL Razavi 9177948978, Iran
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FH Key Location/Qualifiers
FH
FT source 1. .1180
FT /organism="Tomato yellow leaf curl virus"
FT /host="Solanum lycopersicum"
FT /isolate="FD"
FT /mol_type="genomic DNA"
FT /country="Iran:Khorasan Razavi province, Neyshabur,
FT Fadisheh"
FT /collected_by="Sara Gharouni Kardani"
FT /collection_date="31-Dec-2009"
FT /db_xref="taxon:10832"
FT gene complement(<1. .607)
FT /gene="C1"
FT CDS complement(<1. .607)
FT /codon_start=1
FT /gene="C1"
FT /product="replication-associated protein"
FT /protein_id="AFT83000.1"
FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLLALNTPTNKKFIRVA
FT HELHEDGSPHLHVLIQFEGKYQCKNQRFFDLSSPSRSAHFHPNIQAAKSSTDVKTYVEK
FT DGDFIDFGIFQIDGRSARGGQQSANDAYAEALNSGRKSEALNILKEKAPKDYILQFHNL
FT SSNLDRIFQEPPAPYISPFLSSSFNQVPDELEVWVSENV"
FT gene complement(163. .471)
FT /gene="C4"
FT CDS complement(163. .471)
FT /codon_start=1
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="AFT83001.1"
FT /translation="MNYMKMGLLISMFSSSSKESTSVRTNDSSIYPLQAGQHISIRTFR
FT QLRAQQMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAENPRPSIY"
FT gene 920. .>1180
FT /gene="V2"
FT CDS 920. .>1180
FT /codon_start=1
FT /gene="V2"
FT /product="precoat protein"
FT /protein_id="AFT83002.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLVRDL
FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCP"
FT gene 1080. .>1180
FT /gene="V1"
FT CDS 1080. .>1180
FT /codon_start=1
FT /gene="V1"
FT /product="coat protein"
FT /protein_id="AFT83003.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVP"
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SQ Sequence 1180 BP; 329 A; 233 C; 252 G; 366 T; 0 other;
jq928344 Length: 1180 03-OCT-2012 Type: N Check: 6595 ..
1 tgacgttctc tgacacccat acttcaagtt catctggaac ttgattaaaa
51 gatgaagata aaaagggaga aatataagga gccggaggct cttgaaaaat
101 cctatctaaa tttgaactta aattatgaaa ttgtaaaata taatcctttg
151 gggccttctc tttcaatata ttgagggcct cggattttct gcctgaattg
201 agtgcttcgg catatgcgtc gttggcagat tgctgacctc ctctagctga
251 tctgccatcg atttggaaaa ttccaaaatc aatgaagtct ccgtctttct
301 ccacgtaggt cttgacatct gttgagctct tagctgcctg aatgttcgga
351 tggaaatgtg ctgacctgct tggagaggat aaatcgaaga atcgttggtt
401 cttacactgg tactttcctt cgaactggat gagaacatgg agatgaggag
451 acccatcttc atgtagttca tgcgcaactc gtatgaattt cttgttagtt
501 ggtgtattta gggcaagtaa ttgggaaagt gcttcttctt tagagagaga
551 acaattagga taagtcagga aataattttt ggcatatatt ttaaatagac
601 gaggcatggt gaaatgaatc ggtgtccctc aaaactctat ggcaatcggt
651 gtatccggtg tcttacttat acctagacac ccaatggcta tttggtaatt
701 tcgtaaaagt aaatgtaatt caaaattcaa aattcaaaaa tcaaatcatt
751 aaagcggcca tccgtataat attaccggat ggccgcgctc ttttttttat
801 gtggtcccca cgagtgttcc gcagaagtca ctgtcaacca atcaaattgc
851 atcctcaaac gttagataag tattgatttg tctatatata cttggtcccc
901 aagtattttg tcttgcaata tgtgggaccc acttctaaat gaatttcctg
951 aatctgttca cggatttcgt tgtatgttag ctattaaata tttgcagtcc
1001 gttgaggaaa cttacgagcc caatacattg ggccacgatt tagttaggga
1051 tcttatatct gttgtaaggg cccgtgacta tgtcgaagcg accaggcgat
1101 ataatcattt ccacgcccgt ctcgaaggtt cgccgaaggc tgaacttcga
1151 cagcccatac agcagccgtg ctgctgtccc