Sequence of DPV Potato virus Y

Potato virus Y strain GR_PVY12*1998 isolate PVY12 capsid protein gene, partial cds.

ACC No: JQ954319

Dated: 2012-08-05 | Length: 801 | CRC: 732789733

                
ID   JQ954319; SV 1; linear; genomic RNA; STD; VRL; 801 BP.
XX
AC   JQ954319;
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DT   05-AUG-2012 (Rel. 113, Created)
DT   05-AUG-2012 (Rel. 113, Last updated, Version 1)
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DE   Potato virus Y strain GR_PVY12*1998 isolate PVY12 capsid protein gene,
DE   partial cds.
XX
KW   .
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OS   Potato virus Y
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RC   Publication Status: Available-Online prior to print
RP   1-801
RX   PUBMED; 22837421.
RA   Cuevas J., Delaunay A., Rupar M., Jacquot E., Elena S.F.;
RT   "Molecular evolution and phylogeography of Potato virus Y based on the CP
RT   gene";
RL   J. Gen. Virol. 0:0-0(2012).
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RN   [2]
RP   1-801
RA   Delaunay A., Jacquot E.;
RT   ;
RL   Submitted (19-APR-2012) to the INSDC.
RL   UMR INRA-CIRAD-Montpellier SupAgro BGPI, INRA, Cirad TA A-54K, Campus
RL   international de Baillarguet, Montpellier cedex 5 34398, France
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FH   Key             Location/Qualifiers
FH
FT   source          1. .801
FT                   /organism="Potato virus Y"
FT                   /host="Lycopersicon esculentum"
FT                   /strain="GR_PVY12*1998"
FT                   /isolate="PVY12"
FT                   /mol_type="genomic RNA"
FT                   /country="Greece"
FT                   /collected_by="Christina Varveri"
FT                   /collection_date="1998"
FT                   /db_xref="taxon:12216"
FT   CDS             <1. .>801
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /note="coat protein"
FT                   /protein_id="AFO84344.1"
FT                   /translation="ANDTIDAGGSSKKDAKPEQGSIQSNPNKGKDKDVNAGTSGTYTVP
FT                   RIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVRMAYDIG
FT                   ETEMPTVMNGLMVWCIENGTSPNVNGVWVMMDGDEQVEYPLKPIVENAKPTLRQIMAHF
FT                   SDVAEAYIEMRNKKEPYMPRYGLIRNLRDVGLARYAFDFYEVTSRTPVRAREAHIQMKA
FT                   AALKSAQPRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM"
XX
SQ   Sequence 801 BP; 268 A; 162 C; 202 G; 169 T; 0 other;

jq954319 Length: 801  05-AUG-2012  Type: N  Check: 3504  ..

       1  gcaaatgaca caatcgatgc aggaggaagc agcaagaaag atgcaaaacc
      51  agagcaaggc agcatccagt caaacccgaa caaaggaaaa gataaggatg
     101  tgaatgctgg tacatctggg acatatactg tgccgagaat caaggctatc
     151  acgtccaaaa tgagaatgcc caaaagcaag ggagcaaccg tgctaaactt
     201  agaacacttg cttgagtatg ctccacaaca aattgatatt tcaaatactc
     251  gggcaactca atcacagttt gatacgtggt atgaggcagt gcggatggca
     301  tacgacatag gagaaactga gatgccaact gtgatgaatg ggcttatggt
     351  ttggtgcatt gaaaatggaa cctcgccaaa tgtcaacgga gtttgggtta
     401  tgatggatgg ggatgaacaa gtcgagtacc cgttgaaacc aatcgttgag
     451  aatgcaaaac caacccttag gcaaatcatg gcacatttct cagatgttgc
     501  agaagcgtat atagaaatgc gcaacaaaaa ggaaccatat atgccacgat
     551  atggtttaat tcgaaatctg cgggatgtgg gtttagcgcg ttatgccttt
     601  gacttttatg aggtcacatc acgaacacca gtgagggcta gggaagcgca
     651  cattcaaatg aaggccgcag cattgaaatc agcccaacct cgacttttcg
     701  ggttggacgg tggcatcagt acacaagagg aaaacacaga gaggcacacc
     751  accgaggatg tctctccaag tatgcatact ctacttggag ttaagaacat
     801  g