Sequence of DPV Potato virus Y

Potato virus Y strain SLO7*2007 isolate SLO7 capsid protein gene, partial cds.

ACC No: JQ954377

Dated: 2012-08-05 | Length: 801 | CRC: 1116643586

                
ID   JQ954377; SV 1; linear; genomic RNA; STD; VRL; 801 BP.
XX
AC   JQ954377;
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DT   05-AUG-2012 (Rel. 113, Created)
DT   05-AUG-2012 (Rel. 113, Last updated, Version 1)
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DE   Potato virus Y strain SLO7*2007 isolate SLO7 capsid protein gene, partial
DE   cds.
XX
KW   .
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OS   Potato virus Y
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RC   Publication Status: Available-Online prior to print
RP   1-801
RX   PUBMED; 22837421.
RA   Cuevas J., Delaunay A., Rupar M., Jacquot E., Elena S.F.;
RT   "Molecular evolution and phylogeography of Potato virus Y based on the CP
RT   gene";
RL   J. Gen. Virol. 0:0-0(2012).
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RN   [2]
RP   1-801
RA   Delaunay A., Jacquot E.;
RT   ;
RL   Submitted (19-APR-2012) to the INSDC.
RL   UMR INRA-CIRAD-Montpellier SupAgro BGPI, INRA, Cirad TA A-54K, Campus
RL   international de Baillarguet, Montpellier cedex 5 34398, France
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FH   Key             Location/Qualifiers
FH
FT   source          1. .801
FT                   /organism="Potato virus Y"
FT                   /host="Solanum tuberosum"
FT                   /strain="SLO7*2007"
FT                   /isolate="SLO7"
FT                   /mol_type="genomic RNA"
FT                   /country="Slovenia"
FT                   /collected_by="Maja Ravnikar"
FT                   /collection_date="2007"
FT                   /db_xref="taxon:12216"
FT   CDS             <1. .>801
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /note="coat protein"
FT                   /protein_id="AFO84402.1"
FT                   /translation="GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHTVP
FT                   RIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYGAVQLAYDMG
FT                   ETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGDEQVEYPLKPIVENAKPTLRQIMAHF
FT                   SDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKA
FT                   AALKSAQPRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM"
XX
SQ   Sequence 801 BP; 275 A; 165 C; 191 G; 170 T; 0 other;

jq954377 Length: 801  05-AUG-2012  Type: N  Check: 609  ..

       1  ggaaatgaca caatcgatgc aggaggaagc actaagaagg atgcaaaaca
      51  agagcaaggt agcattcaac caaatctcaa caaggaaaag gaaaaggacg
     101  tgaacgttgg aacatctgga actcatactg tgccacgaat taaagctatc
     151  acgtccaaaa tgagaatgcc caagagtaaa ggtgcaactg tactaaattt
     201  ggaacactta ctcgagtacg ctccacagca aattgacatc tcaaatactc
     251  gagcaactca atcacagttt gatacgtggt atggagcggt acaacttgca
     301  tacgacatgg gagaaactga aatgccaact gtgatgaatg ggcttatggt
     351  ttggtgcatt gaaaatggaa cctcgccaaa catcaacgga gtttgggtta
     401  tgatggatgg agatgaacaa gtcgaatacc cactgaaacc aatcgttgag
     451  aatgcaaaac caacacttag gcaaatcatg gcacatttct cagatgttgc
     501  agaagcgtat atagaaatgc gcaacaaaaa ggaaccatat atgccacgat
     551  atggtttagt tcgtaatctg cgcgatggaa gtttggctcg ctatgctttt
     601  gacttttatg aggtcacatc acgaacacca gtgagggcta gggaagcgca
     651  cattcaaatg aaggccgcag cattgaaatc agcccaacct cgacttttcg
     701  ggttggacgg tggcatcagt acacaagagg agaacacaga gaggcacacc
     751  accgaggatg tctctccaag tatgcatact ctacttggag tcaagaacat
     801  g