Sequence of DPV Sugarcane streak mosaic virus

Sugarcane streak mosaic virus isolate W17 coat protein gene, partial cds.

ACC No: JQ954699

Dated: 2012-10-08 | Length: 846 | CRC: -260080705

                
ID   JQ954699; SV 1; linear; genomic RNA; STD; VRL; 846 BP.
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AC   JQ954699;
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DT   08-OCT-2012 (Rel. 114, Created)
DT   08-OCT-2012 (Rel. 114, Last updated, Version 1)
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DE   Sugarcane streak mosaic virus isolate W17 coat protein gene, partial cds.
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KW   .
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OS   Sugarcane streak mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Poacevirus.
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RN   [1]
RP   1-846
RA   He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.;
RT   "Genetic variability and population structure of Sugarcane streak mosaic
RT   virus (SCSMV)";
RL   Unpublished.
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RN   [2]
RP   1-846
RA   He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.;
RT   ;
RL   Submitted (19-APR-2012) to the INSDC.
RL   State Key Laboratory for Biology of Plant Diseases and Insect Pests,
RL   Institute of Plant Protection, Chinese Academy of Agricultural Sciences,
RL   West 2 Yuanmingyuan Road, Haidian, Beijing 100193, China
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FH   Key             Location/Qualifiers
FH
FT   source          1. .846
FT                   /organism="Sugarcane streak mosaic virus"
FT                   /host="sugarcane"
FT                   /isolate="W17"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collected_by="Wenfeng Li and Zhen He"
FT                   /collection_date="26-Aug-2010"
FT                   /db_xref="taxon:53954"
FT   CDS             <1. .846
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="AFU50391.1"
FT                   /translation="GTQPPQNQSSSPATTSSISSTTTSQAGSQTTGNLSNTVSQTMKSL
FT                   YVPPLVKSLKTEAKAKQMMRYTPPQALISSSAASIRQFNDWANTAAEGYGKTIQQFTDE
FT                   ILPFWIYWCVVNGATEENKTKPKWTKAVLNLDGADGTEITVDENGPQVEFEMGPMYRNA
FT                   KPGIRAIMRHFGELAYKWVQFSVRSGKPIIPHNAVKAGLTTPEFYPCCIDFVMVNILSP
FT                   AEIDVRNQVINARTPRMGKPLFRHALRAGGDEDTDLRREDDANYGRTQIGGAHFGRAQH
FT                   "
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SQ   Sequence 846 BP; 265 A; 193 C; 211 G; 177 T; 0 other;

jq954699 Length: 846  08-OCT-2012  Type: N  Check: 2213  ..

       1  ggaacgcagc cacctcagaa tcagagtagt tcaccagcga caacatcaag
      51  catatcatca acaacaacga gtcaagctgg tagtcagaca acagggaatt
     101  tgtctaatac agtatctcag accatgaaat ccctgtacgt tccgccattg
     151  gtgaaatcgc tcaaaacaga agccaaggca aagcagatga tgaggtacac
     201  accaccacaa gctctcatct cttcatcagc cgcctcgata cgacagttca
     251  acgattgggc gaacacagca gctgaaggat atgggaagac tattcaacaa
     301  ttcacagatg aaatacttcc attctggatt tactggtgtg tcgttaacgg
     351  agcgacagaa gagaacaaaa ccaagcccaa gtggacaaaa gctgtgttaa
     401  atctagatgg agctgatggg acagagataa ctgttgacga aaatgggcct
     451  caagtggagt tcgaaatggg gccaatgtat agaaacgcca aacctggaat
     501  tcgcgctatc atgaggcact ttggcgaatt ggcgtacaag tgggttcagt
     551  tctcggttcg tagcgggaaa cccataatac cacataatgc agtaaaggca
     601  ggattaacaa ctccagagtt ttatccttgc tgcattgatt ttgtgatggt
     651  gaacatcctc tcaccagcag aaatagacgt gcgtaaccag gtgattaacg
     701  cacgcacacc ccggatggga aagcctttat tccgtcacgc acttagagcc
     751  gggggagatg aggacacgga cctgcgtaga gaagatgatg ctaattatgg
     801  aaggacgcag atcggaggcg ctcattttgg gcgcgctcag cactga