Sequence of DPV Sugarcane streak mosaic virus

Sugarcane streak mosaic virus isolate M114 coat protein gene, partial cds.

ACC No: JQ954708

Dated: 2012-10-08 | Length: 846 | CRC: -591935404

                
ID   JQ954708; SV 1; linear; genomic RNA; STD; VRL; 846 BP.
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AC   JQ954708;
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DT   08-OCT-2012 (Rel. 114, Created)
DT   08-OCT-2012 (Rel. 114, Last updated, Version 1)
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DE   Sugarcane streak mosaic virus isolate M114 coat protein gene, partial cds.
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KW   .
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OS   Sugarcane streak mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Poacevirus.
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RN   [1]
RP   1-846
RA   He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.;
RT   "Genetic variability and population structure of Sugarcane streak mosaic
RT   virus (SCSMV)";
RL   Unpublished.
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RN   [2]
RP   1-846
RA   He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.;
RT   ;
RL   Submitted (19-APR-2012) to the INSDC.
RL   State Key Laboratory for Biology of Plant Diseases and Insect Pests,
RL   Institute of Plant Protection, Chinese Academy of Agricultural Sciences,
RL   West 2 Yuanmingyuan Road, Haidian, Beijing 100193, China
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FH   Key             Location/Qualifiers
FH
FT   source          1. .846
FT                   /organism="Sugarcane streak mosaic virus"
FT                   /host="sugarcane"
FT                   /isolate="M114"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collected_by="Wenfeng Li and Zhen He"
FT                   /collection_date="03-Jun-2011"
FT                   /db_xref="taxon:53954"
FT   CDS             <1. .846
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="AFU50400.1"
FT                   /translation="GTQPPQNQSSSPATTSSISSTTTSQVDSQTTGNLSNTVSQTMRSL
FT                   YVPPLVKSLKTEAKAKQMMRYTPPQALISSSAASIRQFNDWANTAAEGYGKTIQQFTDE
FT                   ILPFWIYWCVVNGATEENKTKPKWTKAVLNLDGADGTEITVDENGPQVEFEMGPMYRNA
FT                   KPGIRAIMRHFGELAYKWVQFSVRSGKPIIPHNAVKAGLTTPEFYPCCIDFVMVNILSP
FT                   AEIDVRNQVINARTPRMGKPLFRHALRAGGDEDTDLRREDDANYGRTQIGGAHFGRAQH
FT                   "
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SQ   Sequence 846 BP; 264 A; 190 C; 211 G; 181 T; 0 other;

jq954708 Length: 846  08-OCT-2012  Type: N  Check: 5067  ..

       1  ggaacgcagc caccccagaa tcagagtagt tcaccagcga caacatcaag
      51  catatcatca acaacaacga gtcaagttga tagtcagaca acagggaatt
     101  tgtctaatac agtctctcag accatgagat ccctgtacgt tccaccattg
     151  gtgaaatcgc tcaaaacaga agccaaggca aagcagatga tgaggtacac
     201  accaccacaa gctcttatct cttcatcagc cgcctcaata cgacagttca
     251  atgattgggc gaatacagca gctgagggat atgggaagac tattcaacaa
     301  ttcacagatg aaatacttcc attctggatt tattggtgtg tcgttaacgg
     351  agcgacagaa gagaataaaa ccaagcccaa gtggacaaaa gctgtgttaa
     401  atctggatgg agctgatggg acagagataa ctgttgacga aaatgggcct
     451  caagtggagt tcgaaatggg gccaatgtat agaaacgcca aacctggaat
     501  tcgcgccatc atgagacact ttggcgaatt ggcgtacaag tgggttcagt
     551  tctcggttcg tagcgggaaa cccataatac cacataatgc agtaaaggca
     601  ggattaacaa ctccagagtt ttatccttgc tgcattgatt ttgtgatggt
     651  gaatatcctc tcaccagcag aaatagacgt gcgtaaccag gtgattaacg
     701  cacgcacacc ccggatggga aagcctttat tccgtcacgc gcttagagcc
     751  gggggagacg aggacacgga cctgcgtaga gaagatgatg ctaattatgg
     801  aaggacgcag atcggaggcg ctcattttgg gcgcgctcag cactga