Sequence of DPV Sugarcane streak mosaic virus
Sugarcane streak mosaic virus isolate M55 polyprotein gene, partial cds.
ACC No: JQ954721
Dated: 2012-10-08 | Length: 1579 | CRC: -446356751
ID JQ954721; SV 1; linear; genomic RNA; STD; VRL; 1579 BP.
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AC JQ954721;
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DT 08-OCT-2012 (Rel. 114, Created)
DT 08-OCT-2012 (Rel. 114, Last updated, Version 1)
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DE Sugarcane streak mosaic virus isolate M55 polyprotein gene, partial cds.
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KW .
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OS Sugarcane streak mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Poacevirus.
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RN [1]
RP 1-1579
RA He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.;
RT "Genetic variability and population structure of Sugarcane streak mosaic
RT virus (SCSMV)";
RL Unpublished.
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RN [2]
RP 1-1579
RA He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.;
RT ;
RL Submitted (19-APR-2012) to the INSDC.
RL State Key Laboratory for Biology of Plant Diseases and Insect Pests,
RL Institute of Plant Protection, Chinese Academy of Agricultural Sciences,
RL West 2 Yuanmingyuan Road, Haidian, Beijing 100193, China
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FH Key Location/Qualifiers
FH
FT source 1. .1579
FT /organism="Sugarcane streak mosaic virus"
FT /host="sugarcane"
FT /isolate="M55"
FT /mol_type="genomic RNA"
FT /country="China"
FT /collected_by="Wenfeng Li and Zhen He"
FT /collection_date="12-Jun-2008"
FT /db_xref="taxon:53954"
FT CDS <1. .>1579
FT /codon_start=3
FT /product="polyprotein"
FT /note="contains NIa-Pro protein and NIb protein"
FT /protein_id="AFU50413.1"
FT /translation="WDDGKQQWDSREGTYTNVFKTLYDLDPTKFKYVVAEAPGYRFKKR
FT LNRQEKKRLSETIIEGIRSQMASEGVYDYPEVTQATLYLFGDPGQPAKKVILTPHNPLA
FT VSQGSGNPVGFPSNRGELRQTGAAMEMTEEEKQQALASETIVMHAQARIDISHVEKNVG
FT LISDGSYTSQCFITQSWCVAPYHLASYFKQTSNTLTITTTSGHYTLPRPLVHKILNHDL
FT VIFKMPGDFPPMKKISCFRKPNPDDEIVLITTKRTPSGLRTTFSSSFYISEHHSGMMQY
FT ALKSVPGFCGGPIMSIKDGQIIGFHSAARVVNMQDRGSTFTCVNDEVIEVLQSESSQTL
FT IPWLFNEEMVQWKGVNSNLDPRNFPIAKTHTELVFHGAEIQHGTDKYFGDNLTIQGRIN
FT QSFNNRHVIKGSDTYFDEFVMHVRPAPERVDAHLPSDLSVEAFFKDFLKYATPVELGRV
FT DLGCLASAVDKVIGHLEDQGFTPKEFQVETNFYTLLNSMNLDTAMGALYQTKKRDVLVP
FT ATHEELST"
XX
SQ Sequence 1579 BP; 498 A; 333 C; 352 G; 396 T; 0 other;
jq954721 Length: 1579 08-OCT-2012 Type: N Check: 5239 ..
1 attgggatga tggaaaacag caatgggatt cacgtgaagg cacctacacg
51 aatgtgttta agacattata cgacctggat ccaactaagt tcaaatatgt
101 tgttgctgaa gctcctggat atcgttttaa gaaaagactt aacagacaag
151 agaagaaaag attatcagaa actattattg aaggaattag gtctcaaatg
201 gcctcagaag gagtgtacga ttatcccgaa gtgactcagg caactttgta
251 tctatttggt gatcctggcc aaccagctaa gaaggtcatt ctaacaccgc
301 acaacccact ggctgtttca caaggaagtg gcaaccctgt tggatttcca
351 agcaatcgtg gagagcttcg acaaactgga gcggccatgg aaatgacgga
401 agaggaaaag caacaagcgt tagcgagtga gacaatagtg atgcacgccc
451 aagcacgaat agacatttca catgttgaga aaaacgttgg gttaatctca
501 gatgggtcgt acacttcgca atgctttatc acacagagct ggtgtgttgc
551 tccataccac cttgcgagct attttaaaca aactagtaac acattgacaa
601 taaccacaac ttctggacac tacacactgc ctcgaccgtt ggtgcacaaa
651 attctcaatc atgatttagt aatcttcaaa atgcctggcg actttccacc
701 gatgaaaaag atttcgtgtt ttcgaaaacc caatccagat gacgaaattg
751 ttctaatcac aactaaaaga acgccgtctg ggttgagaac aacattctca
801 tcgtcgtttt atatcagtga acatcactcc ggaatgatgc agtatgcact
851 caaatcggtg ccaggctttt gtggaggacc aatcatgtca atcaaggatg
901 gccaaatcat tggattccac tcggcagctc gagtagtgaa catgcaagat
951 cgtggatcaa cattcacttg tgttaacgat gaggtcatcg aagtcttgca
1001 atcagagagc tcgcaaacat taattccgtg gttgtttaat gaagagatgg
1051 tccaatggaa gggtgtcaat tcaaatctcg atccaagaaa ctttccaatt
1101 gcaaaaacac atacggagct tgtttttcac ggcgcagaga tacaacacgg
1151 cacagacaaa tactttggcg acaatctcac gatacaaggg cgaatcaatc
1201 aatcattcaa caacaggcat gtcatcaaag gatcggacac atatttcgat
1251 gagtttgtta tgcatgtcag accagcacca gagcgagtgg acgcgcattt
1301 accgagtgat ctcagtgtgg aagctttctt taaggatttt ctcaagtatg
1351 ccacacctgt tgagcttgga cgagtggatt tgggctgtct ggcgagcgct
1401 gtggacaaag ttattgggca tcttgaagat cagggattta caccaaaaga
1451 attccaagtt gaaacaaatt tttatacact tcttaattca atgaacttgg
1501 acacggcaat gggagctttg taccaaacta agaagcgcga tgtccttgta
1551 ccagccacac acgaagagtt gagcacttg