Sequence of DPV Sugarcane streak mosaic virus
Sugarcane streak mosaic virus isolate M112 polyprotein gene, partial cds.
ACC No: JQ954726
Dated: 2012-10-08 | Length: 1579 | CRC: -1430420951
ID JQ954726; SV 1; linear; genomic RNA; STD; VRL; 1579 BP.
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AC JQ954726;
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DT 08-OCT-2012 (Rel. 114, Created)
DT 08-OCT-2012 (Rel. 114, Last updated, Version 1)
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DE Sugarcane streak mosaic virus isolate M112 polyprotein gene, partial cds.
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KW .
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OS Sugarcane streak mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Poacevirus.
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RN [1]
RP 1-1579
RA He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.;
RT "Genetic variability and population structure of Sugarcane streak mosaic
RT virus (SCSMV)";
RL Unpublished.
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RN [2]
RP 1-1579
RA He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.;
RT ;
RL Submitted (19-APR-2012) to the INSDC.
RL State Key Laboratory for Biology of Plant Diseases and Insect Pests,
RL Institute of Plant Protection, Chinese Academy of Agricultural Sciences,
RL West 2 Yuanmingyuan Road, Haidian, Beijing 100193, China
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FH Key Location/Qualifiers
FH
FT source 1. .1579
FT /organism="Sugarcane streak mosaic virus"
FT /host="sugarcane"
FT /isolate="M112"
FT /mol_type="genomic RNA"
FT /country="China"
FT /collected_by="Wenfeng Li and Zhen He"
FT /collection_date="03-Jun-2011"
FT /db_xref="taxon:53954"
FT CDS <1. .>1579
FT /codon_start=3
FT /product="polyprotein"
FT /note="contains NIa-Pro protein and NIb protein"
FT /protein_id="AFU50418.1"
FT /translation="WDDGKQQWDSREGTYTNVFKTLYDLDPTKFKYVVAEAPGYRFKKR
FT LNRQEKKRLSETIIEGIRSQMASEGVYDYPEVTQATLYLFGDPGQPAKKVILTPHNPLA
FT VSQGSGNPVGFPSNRGELRQTGPAMEMTEEEKQQALASETIVMHAQARIDISHVEKNVG
FT LISDGSYTSQCFITQSWCVAPYHLASYFKQTSNTLTITTSSGHYTLPRPLVHKILNHDL
FT VIFKMPGDFPPMKKISCLRKPNPDDEIVLITTKRTPSGLRTTFSSSFYISEHHSGMMQY
FT ALKSVPGFCGGPVMSIKDGQIIGFHSAARVVNMQDRGSTFTCVNEEVIEVLQSESSQTL
FT IPWLFNEEMVQWKGVNSNLDPRNFPIAKTHTELVFHGAEVQHGTDKYFGDNLTIQGRIN
FT QSFNNRHVIKGSDTYFDEFVMHVRPAPERVDAHLPSDLSVEAFFKDFLKYATPVELGRV
FT DLECLASAVDKVISHLEDQGFAAKEFQVETNFYTLLNSMNLDTAMGALYQTKKRDVLVP
FT ATHEELST"
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SQ Sequence 1579 BP; 500 A; 313 C; 366 G; 400 T; 0 other;
jq954726 Length: 1579 08-OCT-2012 Type: N Check: 2850 ..
1 attgggatga tggaaaacag cagtgggatt cgcgtgaggg gacatatacg
51 aatgttttca aaacactata tgatttagac ccaacgaaat ttaagtatgt
101 tgtcgctgaa gcaccaggat accggtttaa gaagagattg aacagacaag
151 aaaagaagag gttatcggaa acaatcattg aagggatacg ttcacaaatg
201 gcctctgagg gtgtttatga ttatcctgag gtgacacagg cgacgttgta
251 cttatttgga gatcctggtc aaccagccaa aaaggttatc cttacaccac
301 acaatccatt ggctgtctca caaggtagtg gaaaccccgt tggttttccg
351 agcaaccgtg gcgagctaag acaaactgga cctgcgatgg agatgacaga
401 agaagaaaaa caacaggcgt tggctagtga gactattgtg atgcatgctc
451 aagcacgaat cgacatatcg cacgtagaga aaaacgttgg gctcatctca
501 gatggatctt atacttcaca atgttttatt acgcagagtt ggtgtgttgc
551 tccttatcat ctggcaagtt atttcaagca aactagcaac actttaacta
601 tcacaacgtc ctctggccat tacacgttgc cccgaccatt agtgcataag
651 atactaaatc atgacctagt tattttcaaa atgcctggtg actttccacc
701 aatgaaaaag atatcatgtt tgaggaaacc aaacccagat gacgagattg
751 ttttgataac aaccaagagg acgccgtctg gtttgagaac cacattttca
801 tcatcattct acataagtga acaccattca ggaatgatgc agtatgcgct
851 caaatcagta ccaggctttt gtggaggacc agtcatgtca atcaaggatg
901 gacaaattat agggtttcat tcagccgctc gagttgtaaa catgcaggat
951 cgaggctcaa ctttcacgtg tgtgaatgag gaagtaatcg aggtgctaca
1001 atcggaaagt tcacaaacgc tcataccttg gctctttaac gaggaaatgg
1051 ttcagtggaa aggagtcaat tcaaacctcg acccaagaaa cttcccaatt
1101 gcaaagacac acacagagct agtattccat ggagctgaag tacaacacgg
1151 aactgataag tactttggtg ataatctaac aatacaggga aggataaatc
1201 aatcattcaa caataggcat gtcatcaaag gatcagacac gtacttcgat
1251 gagtttgtca tgcatgtgag accagcacct gagcgagttg atgcgcattt
1301 acctagtgat ctgagtgtgg aggctttctt taaggatttc cttaagtatg
1351 ccacacctgt tgagttaggt cgggtggatt tggaatgttt ggcaagtgcg
1401 gtggataagg tgatcagcca tctcgaagac caaggatttg ctgcaaaaga
1451 atttcaagtt gaaacaaact tttacacatt actgaattcg atgaacttgg
1501 atacagctat gggtgcgttg taccaaacaa agaagcgcga tgtactcgta
1551 ccagcaacac acgaagagtt gagcacttg