Sequence of DPV Velvet tobacco mottle virus
Velvet tobacco mottle virus clone PIK24 P1 (P1) gene, complete cds; and P2a gene, partial cds.
ACC No: JQ968536
Dated: 2013-04-05 | Length: 981 | CRC: 1269382245
ID JQ968536; SV 1; linear; genomic RNA; STD; VRL; 981 BP.
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AC JQ968536;
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DT 29-JUL-2012 (Rel. 113, Created)
DT 05-APR-2013 (Rel. 116, Last updated, Version 3)
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DE Velvet tobacco mottle virus clone PIK24 P1 (P1) gene, complete cds; and P2a
DE gene, partial cds.
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KW .
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OS Velvet tobacco mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Sobemovirus.
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RN [1]
RP 1-981
RX DOI; 10.1007/s11262-012-0801-2.
RX PUBMED; 22983896.
RA Arthur K., Collins N.C., Randles J.W.;
RT "Mutation rate in Velvet tobacco mottle virus varies between genomic region
RT and virus variant but is not influenced by obligatory mirid transmission";
RL Virus Genes 45(3):575-580(2012).
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RN [2]
RP 1-981
RA Arthur K.R., Collins N.C., Randles J.W.;
RT ;
RL Submitted (22-APR-2012) to the INSDC.
RL School of Agriculture, Food and Wine, University of Adelaide, Waite Rd.,
RL Adelaide, SA 5064, Australia
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FH Key Location/Qualifiers
FH
FT source 1. .981
FT /organism="Velvet tobacco mottle virus"
FT /isolate="VTMoV-K1"
FT /mol_type="genomic RNA"
FT /country="Australia"
FT /isolation_source="mirid insect transmission 24 months"
FT /collected_by="Kieren Arthur"
FT /collection_date="Jul-2010"
FT /clone="PIK24"
FT /PCR_primers="fwd_name: vtmov-5utrf, fwd_seq:
FT atattgaagggaaagtcttgc, rev_name: vtmov-2ar6, rev_seq:
FT agacaacgagagactttggttca"
FT /db_xref="taxon:12473"
FT gene 46. .504
FT /gene="P1"
FT CDS 46. .504
FT /codon_start=1
FT /gene="P1"
FT /product="P1"
FT /db_xref="UniProtKB/TrEMBL:I7A6P5"
FT /protein_id="AFN89793.1"
FT /translation="MPSIDVEVEKILHLSNRKRLRSVCVARKKTFVDKISEGFVCTLYG
FT EYDHDYVTSVHLHIVCSCGRAFFDFVEFKDIKLRDFQYQSQCICPTRNWSTVAYTDLTT
FT VNCQVEGCDYCEGIESDSDSDSEAIIEEFLQKFSEVGISGSSSSPQTN"
FT CDS 561. .>981
FT /codon_start=1
FT /product="P2a"
FT /db_xref="UniProtKB/TrEMBL:I7B4S9"
FT /protein_id="AFN89794.1"
FT /translation="MLSELVQLCLSATMTLALVVSMMLDPSYGWLITMSVMLVSLELTI
FT RPFRRSLDYMKIVVRDEPNEPEVARIVGAPTYHPIHGVVCKCLWNSKEFNVVVQPSLWP
FT LAFPPNISQGVVKEGAMIGVPFTSLPSGAEPKSLVV"
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SQ Sequence 981 BP; 248 A; 209 C; 240 G; 284 T; 0 other;
jq968536 Length: 981 05-APR-2013 Type: N Check: 7654 ..
1 atattgaagg gaaagtcttg cactcagtac ccattatatt ttgatatgcc
51 cagcattgat gttgaagtag aaaagatcct gcacttgagc aacagaaaga
101 gactaaggtc tgtctgtgtg gcgaggaaga agacgttcgt agacaagata
151 tccgaaggat ttgtctgcac tctttacgga gagtacgatc acgactacgt
201 caccagtgtg catttgcaca ttgtttgctc gtgcggtaga gctttctttg
251 attttgttga gttcaaggac ataaaactcc gagatttcca atatcaaagt
301 cagtgtatct gtcccaccag gaattggtcg acggtcgctt acactgatct
351 tactaccgtc aactgccaag tggaaggttg tgattactgt gaggggattg
401 agtcagactc tgattcggat tctgaggcca tcatagagga atttcttcaa
451 aagttttccg aggttggcat ctctggatcg tccagttctc cccagactaa
501 ctaggactcg gttccgttta ttttcttaca aatcatttaa ttgttttgta
551 attgagaaag atgttgagcg agttagtcca gttgtgtctt tcagcaacca
601 tgactctagc gctggtagtg tcaatgatgc tggacccgag ctacgggtgg
651 ctgatcacca tgtctgtgat gttagtctcc ttagagctga caatcaggcc
701 gttcaggcgc tctctagact acatgaaaat tgtggtccga gatgagccca
751 atgagcctga agttgctagg atagtaggcg cgccaactta ccacccaatt
801 catggcgttg tttgcaagtg tctgtggaac tcgaaagagt tcaatgtggt
851 tgtgcaaccc agtttgtggc ctctagcctt tcccccaaac atatcacaag
901 gggtagtaaa ggaaggggct atgataggtg taccattcac atccctaccc
951 tctggagctg aaccaaagtc tctcgttgtc t