Sequence of DPV Sugarcane streak mosaic virus
Sugarcane streak mosaic virus isolate M71 polyprotein gene, partial cds.
ACC No: JQ975082
Dated: 2012-10-08 | Length: 2765 | CRC: 2122348632
ID JQ975082; SV 1; linear; genomic RNA; STD; VRL; 2765 BP.
XX
AC JQ975082;
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DT 08-OCT-2012 (Rel. 114, Created)
DT 08-OCT-2012 (Rel. 114, Last updated, Version 1)
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DE Sugarcane streak mosaic virus isolate M71 polyprotein gene, partial cds.
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KW .
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OS Sugarcane streak mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Poacevirus.
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RN [1]
RP 1-2765
RA He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.;
RT "Genetic variability and population structure of Sugarcane streak mosaic
RT virus (SCSMV)";
RL Unpublished.
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RN [2]
RP 1-2765
RA He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.;
RT ;
RL Submitted (24-APR-2012) to the INSDC.
RL State Key Laboratory for Biology of Plant Diseases and Insect Pests,
RL Institute of Plant Protection, Chinese Academy of Agricultural Sciences,
RL West 2 Yuanmingyuan Road, Haidian, Beijing 100193, China
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FH Key Location/Qualifiers
FH
FT source 1. .2765
FT /organism="Sugarcane streak mosaic virus"
FT /host="sugarcane"
FT /isolate="M71"
FT /mol_type="genomic RNA"
FT /country="China"
FT /collected_by="Wenfeng Li and Zhen He"
FT /collection_date="12-Aug-2009"
FT /db_xref="taxon:53954"
FT CDS <1. .>2765
FT /codon_start=1
FT /product="polyprotein"
FT /protein_id="AFU50453.1"
FT /translation="SARSLFIDAGLYAVALSLVYCALQIVRKIFKRLSKMLHDDDTTRL
FT AQYDEMRIMAKGNKQLIAMIDKMEDEQSESLVHHAQGKADNMYVKILAWISLFVGCFNV
FT GLANDIYFAVTKYRTLLDIATTSSPESLVFHAQDEQEDMKRLLDTRDNFIDFVYQHDEH
FT DGSVDRESLDAWYTRICYQERVTEHPLKCGQELTLTRLNSTDIAESITRTSHNEFTVIG
FT GVGTGKSTKLPGALSIYGPVLILVPSRELSVNLAASIEGVTQKVPSVYMHNCSIRGTSN
FT ITIMTYGYALIFFYHNRIEMQKYKFIQMDECHEFSEHMICFYAWWKENSQYTKLVKTTA
FT TPPGARIHNGFVDTNHEVIVQEIPSMTVDEFCRKSIDRHVDGLQARFPNGGRILIFAPS
FT RKDCEYIKASLITMGRTKIWAVYRKSTLAGEKLIEELNNDHTFYQIIVTTTVLQNGVNL
FT SPDGAIDFGITYEAAYDTDHRILTVRRRNINPGELIQRVGRIGRDKPGTFIQVGKRLDR
FT EQPPNACTTTNAILISFAMELAPYVGPHLIEDINWVTREQIKTAMLFSAPLLFMIHYIR
FT RDGKMLEGFYHQFKGLLLRTSEVILCHDLISEPQRHSYRTLRDYQLSGEIEHDEPLPAI
FT PIPFYSNDFAVPFYIALGHITAEAIKPRSFTVRLPVPNVKKAVLRLSTSEAQVDRTIGI
FT LQVRLQQIRERLDKFNTLRAETAGLRLTNLFNTCYTRATSQSEKSLQASLILGTELLSS
FT LEIARAEKNDKELEKLLANNPMLSECLIYHGGQEAFLEQYLFPTFKHPIKAYLVAIACL
FT TVGVGCLGYYYLKRRETLIMHAGKKRRTHAREDRYKRTGLMGQDGSSYHWVGSEKDIID
FT DWGAAYAKKNAGKKKPSDWDDGKQQWDSREGTYTNVFKTLYDLDPTKFKYV"
FT mat_peptide <1. .243
FT /product="P3 protease"
FT mat_peptide 244. .390
FT /product="6K1 protein"
FT mat_peptide 391. .2358
FT /product="CI protein"
FT mat_peptide 2359. .2502
FT /product="6K2 protein"
FT mat_peptide 2503. .>2765
FT /product="Vpg protein"
XX
SQ Sequence 2765 BP; 858 A; 563 C; 621 G; 723 T; 0 other;
jq975082 Length: 2765 08-OCT-2012 Type: N Check: 5541 ..
1 agcgctcgtt cgttattcat agatgctggc ctttacgccg tggctttatc
51 attggtttat tgcgctctcc agatcgttag gaagattttt aaaagattaa
101 gcaaaatgct ccatgatgac gacaccacac gactagcgca gtatgacgaa
151 atgaggatta tggctaaagg taacaaacag ctcatcgcaa tgatcgataa
201 gatggaagat gaacaatcag aaagcttagt gcatcacgca caaggtaaag
251 cggacaacat gtatgttaag attcttgcat ggatatctct cttcgttggc
301 tgctttaacg tgggattagc gaacgacata tattttgcgg tcaccaaata
351 tcgcacactc ttggacatcg ctacaacaag ttcacctgag tcattggtat
401 ttcacgcaca agatgaacaa gaagatatga aacggttgct ggacactcgt
451 gataatttta tcgactttgt ctaccagcat gatgaacatg atgggagtgt
501 tgatagagag agtcttgacg cctggtatac gagaatttgc tatcaagaga
551 gggttactga acacccgctc aagtgtggtc aagagctcac tctcacaaga
601 ctcaatagca cggacatcgc agaaagcata acacgcacgt ctcataacga
651 gttcactgtt attggtggtg ttggaacagg gaagagtacg aaactccctg
701 gtgcgttatc catttatggt ccagtgttga ttctagtgcc ctcgcgagag
751 ctatcggtta acctcgcagc tagcattgaa ggagttacac agaaagtccc
801 aagtgtttac atgcacaatt gctcgatccg aggcacaagc aacattacta
851 tcatgacata tggttatgcg ctgattttct tttatcataa tcgaattgaa
901 atgcaaaagt ataagtttat ccaaatggat gagtgtcatg aattcagcga
951 acacatgatc tgtttttatg cctggtggaa agaaaactcg caatacacca
1001 aactagtgaa gacgacagca acaccaccag gagcacgcat tcataatgga
1051 ttcgttgata ccaatcatga ggtgatagtg caagagattc caagtatgac
1101 agttgatgaa ttctgccgca aatctatcga tcgacacgtt gatggcttac
1151 aagctcggtt tccaaacggt ggacgtatac tcatttttgc cccatcacga
1201 aaggattgcg aatatattaa ggcctcactt attacgatgg ggagaacaaa
1251 aatttgggct gtataccgga aaagcacttt ggctggtgaa aagttgattg
1301 aagagcttaa taatgaccac actttttatc agatcattgt caccacaaca
1351 gttttgcaga atggagtaaa cttatcacca gatggagcaa ttgattttgg
1401 tatcacttat gaggccgcat atgacacaga tcatagaatc ctcactgttc
1451 gacggaggaa tatcaaccca ggtgagttaa tacaaagagt tggtcgtata
1501 gggcgggata aaccaggaac gtttattcaa gttggcaaga gattagatcg
1551 agaacaacca cccaatgctt gcacaacaac caacgctatt ttaatctcgt
1601 ttgctatgga gctagcccca tatgttggac cacatcttat tgaagacata
1651 aactgggtta cgagagagca aataaaaacg gctatgttat ttagcgcacc
1701 tctgctattt atgatacact acattcgaag ggatggaaag atgttggaag
1751 ggttttacca ccagttcaaa ggacttctac tacgaacaag tgaggtaata
1801 ctttgccatg atttaatttc tgaaccacag cggcacagtt accgaacttt
1851 acgagattac caactttctg gtgaaataga acacgacgag cccttgccgg
1901 ctattcctat tccattctac tcgaacgact ttgcggtgcc attttatatc
1951 gctcttggtc acataacagc agaggcgatt aaaccacgat ctttcacagt
2001 gagactccct gtacctaacg taaagaaagc agtattaaga ttgtcaactt
2051 cagaggcgca agtggataga actattggaa tcttacaagt tcgattacaa
2101 caaattcgag aacgccttga caaattcaac actttgcgcg ctgaaacggc
2151 tgggttacgg ttgacaaacc tatttaacac atgttatacg agggcaacca
2201 gccagagcga aaagtcactt caagcctcgc tcattttagg tacagaactc
2251 ctctcatcct tggagatcgc tcgtgctgag aaaaatgaca aagagctgga
2301 aaaattattg gctaacaatc ccatgcttag tgagtgtctc atttaccacg
2351 gaggacagga agctttcttg gagcaatatt tatttccaac ttttaaacac
2401 ccaattaaag cttacttagt ggcgattgct tgcctaacgg ttggcgttgg
2451 ctgtcttggt tattactact taaagaggag agaaacctta atcatgcatg
2501 ccgggaagaa gcgtcgaact catgctcgtg aggaccgata taagcgaact
2551 ggtttaatgg ggcaagatgg atcgagctat cactgggttg gaagtgaaaa
2601 agacattatc gacgactggg gagctgccta cgccaagaag aatgccggaa
2651 agaaaaagcc ctcagattgg gatgatggaa aacagcagtg ggattcgcgt
2701 gaggggacat atacgaatgt tttcaaaaca ctatatgatt tggacccaac
2751 gaaatttaag tatgt