Sequence of DPV Cucumber mosaic virus

Cucumber mosaic virus isolate Jol186 movement protein (3a) and coat protein (3b) genes, complete cds.

ACC No: JX025994

Dated: 2013-05-31 | Length: 1880 | CRC: -787935392

                
ID   JX025994; SV 1; linear; genomic RNA; STD; VRL; 1880 BP.
XX
AC   JX025994;
XX
DT   31-MAY-2013 (Rel. 116, Created)
DT   31-MAY-2013 (Rel. 116, Last updated, Version 1)
XX
DE   Cucumber mosaic virus isolate Jol186 movement protein (3a) and coat protein
DE   (3b) genes, complete cds.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC   Cucumovirus.
XX
RN   [1]
RP   1-1880
RA   Nematollahi S., Sokhandan Bashir N., Rakhshandehroo F., Zamanizadeh H.;
RT   "Molecular characterization of Cucumber mosaic virus isolates on the basis
RT   of CP, MP and 2b genes reveals evidence of phylogenetic position and
RT   symptomolgy";
RL   Unpublished.
XX
RN   [2]
RP   1-1880
RA   Nematollahi S., Sokhandan Bashir N., Rakhshandehroo F., Zamanizadeh H.;
RT   ;
RL   Submitted (07-MAY-2012) to the INSDC.
RL   Plant Pathology, Azad University, College of Agriculture and Natural
RL   Resources, Science and Research Branch, Tehran, Iran
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1880
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA3"
FT                   /host="muskmelon"
FT                   /isolate="Jol186"
FT                   /mol_type="genomic RNA"
FT                   /country="Iran:Jolfa"
FT                   /collection_date="2009"
FT                   /db_xref="taxon:12305"
FT   gene            1. .840
FT                   /gene="3a"
FT   CDS             1. .840
FT                   /codon_start=1
FT                   /gene="3a"
FT                   /product="movement protein"
FT                   /note="MP"
FT                   /protein_id="AGG16148.1"
FT                   /translation="MAFQGTSRTLTQQSSAATSDDLQKILFSPEAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPEVTHGRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE
FT                   RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK
FT                   SQLNNIESSQYLLTNAKINQNARSESEDLNVESPPAAIGSSSASRSEAFRPQVVNGL"
FT   gene            1135. .1791
FT                   /gene="3b"
FT   CDS             1135. .1791
FT                   /codon_start=1
FT                   /gene="3b"
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /protein_id="AGG16149.1"
FT                   /translation="MDKSESTSAGRNRRRRPRRGSRSAPSSADANFRVLSQQLSRLNKT
FT                   LAAGRPTINHPTFVGSERCRPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV"
XX
SQ   Sequence 1880 BP; 447 A; 441 C; 443 G; 549 T; 0 other;

jx025994 Length: 1880  31-MAY-2013  Type: N  Check: 2875  ..

       1  atggctttcc aaggtaccag taggacttta actcaacagt cctcagcggc
      51  tacgtctgac gatcttcaaa agatactatt tagccctgaa gccattaaga
     101  agatggctac tgagtgtgac ctaggccggc atcactggat gcgcgctgat
     151  aatgctattt cagtccggcc cctcgttccc gaagtaaccc acggtcgtat
     201  tgcttccttc tttaagtctg gatatgatgt tggtgaattg tgctcaaaag
     251  gatacatgag tgtccctcaa gtgttatgtg ctgttactcg aacagtttcc
     301  actgatgctg aagggtcttt gagaatttac ctagctgatt taggcgacaa
     351  ggagttatct cccatagatg ggcaatgcgt ttcgttacat aaccatgatc
     401  ttcccgcttt ggtgtctttc caaccgacgt atgattgtcc tatggagaca
     451  gttgggaatc gtaagcggtg ttttgctgtc gttatcgaaa gacatggtta
     501  tattgggtat accggtacca cagctagcgt gtgtagtaat tggcaagcaa
     551  ggttttcatc taagaataac aactacactc atatcgcagc tgggaagact
     601  ctagtactgc ctttcaacag attagctgag caaacaaaac cgtcagctgt
     651  cgctcgcctg ttgaagtcgc aattgaacaa cattgaatct tcgcaatatt
     701  tgttaacgaa cgcgaagatt aatcaaaatg cgcgcagtga gtccgaggat
     751  ttaaatgttg agagccctcc cgccgcaatc gggagttctt ccgcgtcccg
     801  ctccgaagcc ttcagaccgc aggtggttaa cggtctttag cactttggtg
     851  cgtattagta tataagtatt tgtgagtctg tacataatac tatatctata
     901  gtgtcctgtg tgagttgata cagtagacat ctgtgacgcg atgccgtgtt
     951  gagaagggaa cacatctggt tttagtaagc ctacatcata gttttgaggt
    1001  tcaattcctc tactccctgt tgagcccctt actttctcat ggatgcttct
    1051  ccgcgagatt gcgttattgt ctactgacta ttagagagtg tgtgctgtgt
    1101  tttctctttt gtgtcgtaga attgagtcga gtctatggac aaatctgaat
    1151  caaccagtgc tggtcgtaat cgtcgacgtc gtccgcgtcg tggttcccgc
    1201  tccgccccct cctccgcgga tgctaacttt agagtcttgt cgcagcagct
    1251  ttcgcgactt aataagacgt tagcagctgg tcgtccaact attaaccacc
    1301  caacctttgt agggagtgaa cgctgtagac ctgggtacac gttcacatct
    1351  attaccctaa agccaccaaa aatagaccgt gggtcttatt acggtaaaag
    1401  gttgttgcta cctgattcag tcacggaata tgataagaag cttgtttcgc
    1451  gcattcaaat tcgagttaat cctttgccga aatttgattc taccgtgtgg
    1501  gtgacagtcc gtaaagttcc tgcctcctcg gacttatccg ttgccgccat
    1551  ctctgctatg ttcgcggacg gagcctcacc ggtactggtt tatcagtacg
    1601  ccgcatctgg agtccaagcc aacaacaaat tgttgtatga tctttcggcg
    1651  atgcgcgctg atataggtga catgagaaag tacgccgtcc tcgtgtattc
    1701  aaaagacgat gcgctcgaga cggacgagct agtacttcat gttgacatcg
    1751  agcaccaacg cattcccaca tctggggtgc tcccagtttg attccgtgtt
    1801  ttccagaatc ctccctccga tttctgtggc gggagctgag ttggcagttc
    1851  tgctataaac tgtctgaagt cactaaacgt