Sequence of DPV Sweet potato leaf curl virus
Sweet potato leaf curl virus isolate SPLCV-IYV-1:Del segment DNA-A, complete sequence.
ACC No: JX050195
Dated: 2012-07-31 | Length: 2801 | CRC: 71255311
ID JX050195; SV 1; circular; genomic DNA; STD; VRL; 2801 BP.
XX
AC JX050195;
XX
DT 31-JUL-2012 (Rel. 113, Created)
DT 31-JUL-2012 (Rel. 113, Last updated, Version 1)
XX
DE Sweet potato leaf curl virus isolate SPLCV-IYV-1:Del segment DNA-A,
DE complete sequence.
XX
KW .
XX
OS Sweet potato leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2801
RA Geetanjali A.S., Shilpi S., Mandal B.;
RT "Association of two different betasatellites with Sweet potato leaf curl
RT virus in wild morning glory showing two distinct symptom phenotypes";
RL Unpublished.
XX
RN [2]
RP 1-2801
RA Geetanjali A.S., Shilpi S., Mandal B.;
RT ;
RL Submitted (14-MAY-2012) to the INSDC.
RL Plant Virology Unit, Division of Plant Pathology, Indian Agricultural
RL Research Institute, Pusa Campus, New Delhi, Delhi 110012, India
XX
FH Key Location/Qualifiers
FH
FT source 1. .2801
FT /organism="Sweet potato leaf curl virus"
FT /segment="DNA-A"
FT /host="Ipomoea purpurea (wild morning glory)"
FT /isolate="SPLCV-IYV-1:Del"
FT /mol_type="genomic DNA"
FT /country="India:bush lands of Indian Agricultural Research
FT Institute, New Delhi"
FT /isolation_source="leaves showing yellow vein symptoms"
FT /collected_by="Dr. Bikash Mandal"
FT /collection_date="18-Aug-2009"
FT /db_xref="taxon:100755"
FT gene 46. .441
FT /gene="AV2"
FT CDS 46. .441
FT /codon_start=1
FT /gene="AV2"
FT /product="pre-coat protein"
FT /protein_id="AFO64638.1"
FT /translation="MTLLYKDQSGFRAWRPSMAELWDPLQNPLPDTLYGFRCMLSVKYL
FT QGILKKYEPGTLGFELGPELIRIFRVRQYDRANSRFAEISSLWGETGKTEAELRDSYRA
FT LHWECCPNCCPKLCPGFKRRPDEEKEG"
FT gene 266. .1030
FT /gene="AV1"
FT CDS 266. .1030
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AFO64639.1"
FT /translation="MTGRIRVSPRYHPYGGRPVRRRLNFETAIVPYTGNAVPIAARSYV
FT PVSRGVRMKRKRGDRIPKGCVGPCKIQDYEFKMDVPHTGTFVCVSDFTRGTGLTHRLGK
FT RVCIKSMGIDGKVWMDDNVAKRDHTNIITYWLLRDRRPNKDPLNFGQVFTMYDNEPTTA
FT KIRMDLRDRMQVLKKFSVTVSGGPYSHKEQALVRKFFKGLYNHVTYNHKEEAKYENQLE
FT NALMLYSASSHASNPVYQTLRCRAYFYDSHNN"
FT gene complement(1047. .1481)
FT /gene="AC3"
FT CDS complement(1047. .1481)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /note="Ren"
FT /protein_id="AFO64640.1"
FT /translation="MDSRTGESLSRAQTTRALEFDTNPMSVGRTAPFHLRIMYVHGKPQ
FT GKTILKFQVMVNYKERKQLGFHKMFLQSRILTTRLTGAFHSGTGILERSKWRICNELAN
FT LGFFSLINLVYVIRHLPESVKWIDVIDTVDCNDDVKVLLY"
FT gene complement(1198. .1644)
FT /gene="AC2"
FT CDS complement(1198. .1644)
FT /codon_start=1
FT /gene="AC2"
FT /product="trans-activating protein"
FT /note="Trap"
FT /protein_id="AFO64641.1"
FT /translation="MSNPLFGYKRKCPIQEPLHTEAKKAKRKVPEQRTRIVWKGCGCSA
FT FITTTCKYQHGFTHRGITKSCSDYESTRIRHQPHVCGSDCTVPSQNNVCPRKATGENHP
FT QIPGDGQLQGKEATGIPQDVPPIPDIDDPSNWCFSQWNGYFGTL"
FT gene complement(1553. .2647)
FT /gene="AC1"
FT CDS complement(1553. .2647)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication-associated protein"
FT /note="Rep"
FT /protein_id="AFO64642.1"
FT /translation="MAPPKRFKIQAKNYFITYPRCSLSKEDCLSQLLNIQTPTNKKYIH
FT IAKELHEDGEPHLHVLVQFEGKFVCTNSRFFDLVSPTRSTHFHPNIQGAKSSSDVKSYV
FT DKDGDTLIWGEFQVDGRSARGGQQTANDAAAEALNAGSKEAALQIIREKLPEKYLFQYH
FT NLVSNLDRIFSPPPSVYSSPFSSSSFNAVPDIISDWAAENVMDSAARPDRPISIVIEGP
FT SRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDW
FT QSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKLWLDKPEQEALKNWATANAIFCDVQSPF
FT WVQEEVSHSGATAHRGEEGQEESS"
FT gene complement(2233. .2661)
FT /gene="AC4"
FT CDS complement(2233. .2661)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4"
FT /protein_id="AFO64643.1"
FT /translation="MGVSKWLLRSALKSKPKIISLLIHAVLSLKRTASPNYLTSKPQQT
FT KNTYTSPKNCTKMGNLTSMCWCSSKANSSAQIADSSTLYHPQGRLTFTPTSRELNPRPM
FT SSPTLIRTGIPSSGVNSRSTADLLEEVSRLLTTQPQRL"
XX
SQ Sequence 2801 BP; 733 A; 593 C; 682 G; 793 T; 0 other;
jx050195 Length: 2801 31-JUL-2012 Type: N Check: 8741 ..
1 accggtgccc gccgcgcctc cttttgtggg ccccacaaga gaataatgac
51 attgctttat aaggaccaat caggtttccg tgcttggcgc ccaagtatgg
101 ctgaattgtg ggaccctctc cagaacccac taccagatac tttatacggt
151 ttcaggtgta tgctctccgt aaaataccta caaggtattt tgaagaaata
201 cgagccagga accctagggt tcgagctcgg tccggagttg atccgtatat
251 tcagggtcag gcagtatgac cgggcgaatt cgcgtttcgc cgagatatca
301 tccctatggg gggagaccgg taagacggag gctgaacttc gagacagcta
351 tcgtgcccta cactgggaat gctgtcccaa ttgctgcccg aagctatgtc
401 ccggtttcaa gaggcgtccg gatgaagaga aagaggggtg accgcatccc
451 gaagggatgt gtcggtccat gtaagatcca ggactatgag ttcaagatgg
501 acgttcccca cacgggaacg tttgtctgtg tctcggattt tacaaggggg
551 actgggctta cccatcgcct gggtaagcgt gtttgtatta agtccatggg
601 tatagatggg aaggtatgga tggatgacaa tgtggccaag agagatcaca
651 ccaacatcat cacgtattgg ttgcttcgtg atcgacggcc caataaggac
701 ccgctgaact ttggtcaggt tttcactatg tacgacaacg agcccactac
751 tgctaagatc cgaatggatc tgagggatag aatgcaggtg ttgaagaagt
801 tctctgttac agtttcaggt ggtccataca gccacaagga acaggcttta
851 gttaggaagt tctttaaggg tttgtataat catgttactt acaatcacaa
901 ggaagaagct aagtatgaga atcagttaga gaatgctttg atgttgtata
951 gtgctagtag tcatgctagt aatcctgtgt atcagaccct gcgttgcagg
1001 gcttatttct atgattcgca taataattaa taaaattata tttttattaa
1051 tacagtaata cctttacatc atcattgcaa tctacagtat ctattacatc
1101 tatccattta actgattcag gcaaatgcct gattacataa actaaattaa
1151 taagagaaaa aaaacctaaa tttgctaatt cattacatat tcgccattta
1201 gagcgttcca aaatacccgt tccactgtga aaagcaccag ttagacgggt
1251 cgtcaatatc cgggattgga ggaacatctt gtggaatccc agttgcttcc
1301 tttccttgta attgaccatc acctggaatt tgaggatggt tttcccctgt
1351 ggctttccgt ggacatacat tattctgaga tggaacggtg cagtccgacc
1401 cacagacatg gggttggtgt cgaattctag tgctctcgta gtctgagcac
1451 gacttagtga ttcccctgtg cgtgaatcca tgctggtact tgcaggttgt
1501 ggtgatgaag gctgaacagc cgcaaccctt ccacactatt ctcgtcctct
1551 gttcaggaac tttcctcttg gccttcttcg cctctgtgtg cagtggctcc
1601 tgaatgggac acttcctctt gtacccaaaa aggggattgg acatcgcaga
1651 atatagcgtt tgctgttgcc caatttttga gtgcttcctg ctctggtttg
1701 tccaaccaga gtttaaatga ggagccctct cctggattgc agaggaagat
1751 agtgggaatt ccacctttaa tttgaactgg cttcccgtac ttacagttgg
1801 attgccagtc cttctgggcc cccatgaatt ccttaaagtg ctttaggtat
1851 tgggggttga cgtcatcaat gacgttatac caagcactgt tgctgtacac
1901 tttagggctt agatccaaat gcccacacaa ataattgtga gggcccaaag
1951 acctagccca tactgttttg cctattctgc ttgggccttc aataacaatg
2001 gatatgggtc tatccggccg cgcagcggaa tccatgacat tttcagcggc
2051 ccagtcgctg ataatgtcag gaacggcatt gaaagaagaa gaagaaaaag
2101 gagaagaata tactgaagga ggaggagaaa aaatcctatc taaattacta
2151 actaaattat gatattgaaa taaatatttt tcagggagtt tctccctgat
2201 tatttgtaac gcagcttctt tagaacctgc gtttagagcc tctgcggctg
2251 cgtcgttagc agtctgctga cctcctctag cagatctgcc gtcgacctgg
2301 aattcacccc agatgagggt atccccgtcc ttatcaacgt aggacttgac
2351 atcggacgag gatttagctc cctggatgtt ggggtgaaag tgagtcgacc
2401 ttgtgggtga tacaaggtcg aagaatctgc tatttgtgca gacgaatttg
2451 ccttcgaact gcaccagcac atggaggtga ggttccccat cttcgtgcaa
2501 ttctttggcg atgtgtatgt attttttgtt tgttggggtt tggatgttaa
2551 gtagttggga gaggcagtcc tctttagaga gagaacagcg tggataagta
2601 atgaaataat ttttggcttg gattttaaag cgcttcggag gagccatttg
2651 gagacaccca taagttcaaa tgaattggag actggagaca atatatagta
2701 tgtctccaaa tggcattatg gtaatttaga agatcctttt agctttaatt
2751 caaattccga caactatggg accaccaaaa ggcgggcacc gtattaatat
2801 t