Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus isolate BZ28, complete genome.
ACC No: JX070043
Dated: 2012-08-06 | Length: 2781 | CRC: -1113980056
ID JX070043; SV 1; circular; genomic DNA; STD; VRL; 2781 BP.
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AC JX070043;
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DT 06-AUG-2012 (Rel. 113, Created)
DT 06-AUG-2012 (Rel. 113, Last updated, Version 1)
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DE Tomato yellow leaf curl virus isolate BZ28, complete genome.
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KW .
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OS Tomato yellow leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2781
RA Bao L.Y., Qing L., Ruan T., Yu Y.Q., Xiong Y.;
RT "Genetic Diversity and Population Structure of Tomato yellow leaf curl
RT virus in Shandong Province";
RL Unpublished.
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RN [2]
RP 1-2781
RA Bao L.Y., Qing L., Ruan T., Yu Y.Q., Xiong Y.;
RT ;
RL Submitted (16-MAY-2012) to the INSDC.
RL College of Plant Protection, Southwest University, Tiansheng Road 1,
RL Chongqing 400716, China
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FH Key Location/Qualifiers
FH
FT source 1. .2781
FT /organism="Tomato yellow leaf curl virus"
FT /host="Lycopersicon esculentum Miller"
FT /isolate="BZ28"
FT /mol_type="genomic DNA"
FT /country="China"
FT /collected_by="Tao Ruan, Yunqi Yu"
FT /collection_date="07-Jul-2011"
FT /PCR_primers="fwd_name: sdfull-f, fwd_seq:
FT acttcgacagcccatacagca, rev_name: sdfull-r, rev_seq:
FT ttcagccttcggcgaaccttc"
FT /note="type: genomic DNA"
FT /db_xref="taxon:10832"
FT gene 148. .498
FT /gene="AV2"
FT CDS 148. .498
FT /codon_start=1
FT /gene="AV2"
FT /product="pre-coat protein"
FT /protein_id="AFP19867.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL
FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV
FT PEAQNIQNVSKP"
FT gene 308. .1084
FT /gene="AV1"
FT CDS 308. .1084
FT /codon_start=1
FT /gene="AV1"
FT /product="capsid protein"
FT /protein_id="AFP19865.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW
FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT gene complement(1081. .1485)
FT /gene="AC3"
FT CDS complement(1081. .1485)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhance protein"
FT /protein_id="AFP19869.1"
FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI
FT ISIQIRFNHNIRKILGIHKCFLNFRIWTTLQPQTGRFLRVFRYQVLKYLDSLGVISINN
FT VIRAVDHVLYDVLENTINVTETHDIKYKFY"
FT gene complement(1226. .1633)
FT /gene="AC2"
FT CDS complement(1226. .1633)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcriptional activator protein"
FT /protein_id="AFP19868.1"
FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHI
FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ
FT HQEDIGDSQMFSQLPNLDDITASDWSFLKSI"
FT gene complement(1542. .2615)
FT /gene="AC1"
FT CDS complement(1542. .2615)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication-associated protein"
FT /protein_id="AFP19866.1"
FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNLETPTNKKYIKVC
FT RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK
FT DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL
FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVVSSAARPWRPISIVIEGDSR
FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFITLYEPLFA
FT SINQGPTQDSQEETNKA"
FT gene complement(2171. .2464)
FT /gene="AC4"
FT CDS complement(2171. .2464)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4"
FT /protein_id="AFP19870.1"
FT /translation="MGNHISMCLSNSKASTNVRTNGSSTWYPQTGQHISIRTFRQLRAQ
FT QMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPRHSIQAVNPRPSIY"
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SQ Sequence 2781 BP; 754 A; 531 C; 612 G; 884 T; 0 other;
jx070043 Length: 2781 06-AUG-2012 Type: N Check: 3814 ..
1 accggatggc cgcgcctttt ctttttatgt ggtcctcacg agggttccac
51 agacgtcact gtcaaccaat caaattgcat cctcaaacgt tagctaagtg
101 ttcatttgtc tttatatact tggtccccaa gtagtttgtc ttgcactatg
151 tgggatccac ttctaaatga atttcctgaa tctgttcacg gatttcgttg
201 tatgttagct attaaatatt tgcagtccgt tgaggaaact tacgagccca
251 atacattggg ccacgattta attagggatc ttatatctgt cgtaagggcc
301 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgtct
351 cgaaggttcg ccgaaggctg aacttcgaca gcccatacag cagccgtgct
401 gctgtcccca ttgtccaagg cacaaacaag cgacgatcat ggacgtacag
451 gcccatgtac cggaagccca gaatatacag aatgtatcga agccctgatg
501 ttcctcgtgg atgtgaaggc ccatgtaaag tccagtctta tgagcaacgg
551 gatgatatta agcatactgg tattgttcgt tgtgttagtg atgttactcg
601 tggatctgga attactcaca gagtgggtaa gaggttctgt gttaaatcga
651 tatatttttt aggtaaagtc tggatggatg aaaatattaa gaagcagaat
701 cacactaatc aggtcatgtt cttcttggtt cgtgatagaa ggccttatgg
751 aaacagccca atggattttg gacaggtttt taatatgttc gataatgagc
801 ccagtaccgc aaccgtgaag aatgatttgc gggataggtt tcaagtgatg
851 aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca
901 ggcattagtt aagagatttt ttagaattaa cagtcatgta acttataatc
951 atcaggaggc agccaagtat gagaaccata ctgaaaacgc cttgttattg
1001 tatatggcat gtacgcatgc ctctaatcca gtgtatgcaa ctatgaaaat
1051 acgcatctat ttctatgatt caatatcaaa ttaataaaat ttatatttta
1101 tatcatgagt ttctgttaca tttattgtgt tttcaagtac atcatacaat
1151 acatgatcaa ctgctctgat tacattgtta attgaaatta caccaagact
1201 atctaaatac ttaagaactt gatatctaaa tactcttaag aaacgaccag
1251 tctgaggctg taatgtcgtc caaattcgga agttgagaaa acatttgtga
1301 atccccaata tcttcctgat gttgtggttg aatcttatct gaatggaaat
1351 gatgtcgtgg ttcattagaa atggcctctg gctgtgttct gttatcttga
1401 aatagagggg attgtttatc tcccagataa aaacgccatt ctctgcttga
1451 ggagcagtga tgagttcccc tgtgcgtgaa tccatgattg ttgcagttga
1501 tgtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt
1551 attggtttct tcttggctat cttgtgttgg accttgattg atacttgcga
1601 acagtggctc gtagagggtg atgaaggttg cattcttgag agcccaattt
1651 ttcaaggata tgtttttttc ttcgtctaga tattccctat atgaggaggt
1701 aggtcctgga ttgcagagga agatagtggg aattccccct ttaatttgaa
1751 tgggcttccc gtactttgtg ttgctttgcc agtccctctg ggcccccatg
1801 aattccttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt
1851 gtaccacgca tcattactgt acacctttgg gcttaggtct agatgtccac
1901 ataaatagtt atgtgggcct agagacctgg cccacattgt cttgcctgtt
1951 ctgctatcac cctcaatgac aatacttatg ggtctccatg gccgcgcagc
2001 ggaagatacg acgttctcgg cgacccactc ttcaagttca tctggaactt
2051 gattaaaaga agaagaaaga aatggagaaa cataaacttc taaaggagga
2101 ctaaaaatcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata
2151 gtcctttggg gccttctctt ttaatatatt gagggcctcg gatttactgc
2201 ctgaattgag tgcctcggca tatgcgtcgt tggcagattg ctgacctcct
2251 ctagctgatc tgccatcgat ttggaaaact ccaaaatcaa tgaagtctcc
2301 gtctttctcc acgtaggtct tgacatctgt tgagctctta gctgcctgaa
2351 tgttcggatg gaaatgtgct gacctgtttg gggataccag gtcgaagaac
2401 cgttggttct tacattggta cttgccttcg aattggataa gcacatggag
2451 atgtggttcc ccattctcgt ggagttctct gcaaactttg atgtattttt
2501 tatttgttgg ggtttctagg ttttttaatt gggaaagtgc ttcctcttta
2551 gagagagaac aattgggata tgttaggaaa taatttttgg catatatttt
2601 aaataaacga ggcatgttga aatgaattgg tgtccctcaa agctctatgg
2651 caatcggtgt atcggtgtct tacttatacc tggacaccta atggctattt
2701 ggtaattttg taaaagtaca ttgcaataca aaattcaaaa ttcaaaaatc
2751 aaatcattaa agcggccatc cgtataatat t