Sequence of DPV Soybean chlorotic spot virus
Soybean chlorotic spot virus DNA-A, complete sequence.
ACC No: JX122965
Dated: 2013-01-29 | Length: 2623 | CRC: 322281855
ID JX122965; SV 1; circular; genomic DNA; STD; VRL; 2623 BP.
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AC JX122965;
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DT 19-AUG-2012 (Rel. 113, Created)
DT 29-JAN-2013 (Rel. 115, Last updated, Version 3)
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DE Soybean chlorotic spot virus DNA-A, complete sequence.
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KW .
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OS Soybean chlorotic spot virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2623
RX PUBMED; 23053525.
RA Coco D., Calil I.P., Brustolini O.J., Santos A.A., Inoue-Nagata A.K.,
RA Fontes E.P.;
RT "Soybean chlorotic spot virus, a novel begomovirus infecting soybean in
RT Brazil";
RL Arch. Virol. 158(2):457-462(2013).
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RN [2]
RP 1-2623
RA Coco D., Calil I.P., Santos A.A., Inoue-Nagata A.K., Fontes E.P.B.;
RT ;
RL Submitted (31-MAY-2012) to the INSDC.
RL Bioquimica e Biologia Molecular, Universidade Federal de Vicosa,
RL A.v.P.H.Rolfs, s/n, Campus Universitario, Vicosa, MG 36570000, Brasil
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CC ##Assembly-Data-START##
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2623
FT /organism="Soybean chlorotic spot virus"
FT /segment="DNA-A"
FT /host="Glycine max"
FT /isolate="BR:Jai9254.10"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /collection_date="2010"
FT /db_xref="taxon:1221206"
FT CDS 199. .954
FT /codon_start=1
FT /product="coat protein"
FT /note="CP"
FT /db_xref="GOA:J7GX59"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:J7GX59"
FT /protein_id="AFP87130.1"
FT /translation="MVKRDAPWRHMAGTSKVSRSSNFSPRGGGGPKNNRASEWVNRPMY
FT RKPRIYRMYRTPDVPRGCEGPCKVQSFEQRHDISHVGKVICVSDVTRGNGITHRVGKRF
FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT KNDLRDRFQVMHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSITN"
FT CDS complement(951. .1349)
FT /codon_start=1
FT /product="replication-enhancer protein"
FT /note="REN"
FT /db_xref="GOA:J7H433"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:J7H433"
FT /protein_id="AFP87131.1"
FT /translation="MDSRTGELITARQAENGVYIWEISNPLYFKMNHVEDPLHTTTRIY
FT HVQIRFNHNLRRALALHKAYLNFQVWTISLRASGTTYLNRFKFLVMLYLERVGVISLNN
FT VIRAVRFATDKSYVNYVLENHVIKFKFY"
FT CDS complement(1096. .1485)
FT /codon_start=1
FT /product="transactivating protein"
FT /note="TRAP"
FT /db_xref="GOA:J7GWN5"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:J7GWN5"
FT /protein_id="AFP87133.1"
FT /translation="MRNSSSSTPPSIKVQHRAAKKRAIRRRRIDIDCGCSIYVHLNCAG
FT HGFTHRGTHHCTSGREWRLYLGDIKSPLFQDEPRRGSTTHNDQNIPRPDQVQPQPEESI
FT GSPQGISQFPSLDDIPESFWDDIFK"
FT CDS complement(1427. .2482)
FT /codon_start=1
FT /product="replication-associated protein"
FT /note="REP"
FT /db_xref="GOA:J7H065"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:J7H065"
FT /protein_id="AFP87132.1"
FT /translation="MPPPKRFRINAKNYFLTYPQCSLSKEAALEQIISLQTPSSKKFIK
FT IARELHDDGQPHLHVLLQFEGKFCCTNNRLFDLVSPTRSAHFHPNIQGAKSSSDVKSYV
FT DKDGDTIEWGEFQVDARSARGGQQTANESYAKVLNADNLERALQILKEEQPKDFVLHHH
FT NIRSNLERIFAKAPEPWAPPFHLSSFTLVPQEMQDWVNDYFGRGAAARPERPISIIIEG
FT DSRTGKTMWARALGSHNYLSGHLDFNSRVYSNDVQYNVIDDIAPQYLKLKHWKELIGAQ
FT KDWQSNCKYGKPVQIKGGVPCIILCNPGEGSSYKSFLDKEENAGLKGWTLHNAKFVFLN
FT SPLYQSSTQSS"
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SQ Sequence 2623 BP; 680 A; 556 C; 611 G; 776 T; 0 other;
jx122965 Length: 2623 29-JAN-2013 Type: N Check: 9564 ..
1 accggatggc cgcgcgattt tttatggccc ttttcttttg ggctcgttct
51 tttggaccga gtgtatttga attaaagtaa agttattccc ctgtccaatg
101 aaaatttgtc tgagtggtct agataagccc aacttggtac ccaagttggt
151 tctaacggtt atatattcaa gaataactga ctaattcttt aattcaaaat
201 ggttaagcgg gatgccccat ggcgccacat ggcagggacc tcaaaggtat
251 cccgctctag caatttttca cctcgtggag gaggaggtcc aaaaaacaac
301 agggcctctg aatgggtcaa caggcccatg taccggaagc ccaggatata
351 tcggatgtat agaacccccg atgtacctag aggttgtgaa ggcccttgta
401 aggtccagtc ctttgaacag cgacacgata tatcccatgt tggtaaggtg
451 atatgtgtgt ctgacgtgac aagaggtaat ggtattaccc atcgtgtagg
501 gaaacgtttt tgtgttaagt ccgtttatat tctaggtaag atatggatgg
551 acgagaatat caagttgaag aatcacacga acagtgtgat gttttggttg
601 gttagagaca ggagacccta tggcacccct atggactttg gccaagtgtt
651 caacatgttc gacaatgaac ccagtactgc tacggttaag aacgatcttc
701 gtgatcgttt tcaagtcatg caccggttct atgccaaagt cactggtgga
751 caatatgcga gcaacgaaca ggcattggtc aggcgttttt ggaaggtcaa
801 caatcatgtt gtctacaacc accaagaagc agggaaatac gagaatcata
851 cggaaaacgc attattattg tacatggcat gtactcatgc ctctaacccc
901 gtgtatgcaa ctctaaaaat tcggatctat ttttatgatt cgataaccaa
951 ttaataaaat ttgaatttta ttacatgatt ctcaagtaca taatttacat
1001 atgatttgtc tgttgcgaaa cgaacagctc ttattacatt gttaagcgag
1051 ataacaccta ctcgctctaa gtacagcatg actaggaatt taaatctatt
1101 taaatatgtc gtcccagaag ctctcaggga tatcgtccag acttggaaat
1151 tgagatatgc cttgtggaga gccaatgctc tcctcaggtt gtggttgaac
1201 ctgatctgga cgtggtatat tctggtcgtt gtgtgtagtg gatcctctac
1251 gtggttcatc ttgaaataga ggggatttga tatctcccag atatagacgc
1301 cattctctgc ctgacgtgca gtgatgagtt cccctgtgcg tgaatccatg
1351 tcctgcgcag ttaagatgga cgtatatgga gcacccgcaa tctatatcaa
1401 ttcgtcttct cctgatagcc ctctttttag ctgctctgtg ttgaactttg
1451 atagaggggg gagttgagga agacgaattt cgcattgtga agggtccaac
1501 ctttcaatcc tgcgttttcc tctttgtcga ggaaagattt atagctggag
1551 ccctcgccag gattgcaaag tataatgcaa ggaacccctc ctttaatttg
1601 aactggcttt ccgtatttgc agtttgattg ccagtctttt tgagcaccta
1651 tcaattcctt ccaatgcttt aactttagat attgcggtgc gatgtcatct
1701 attacgttgt actgcacatc atttgaatag acccgcgaat tgaaatcgag
1751 gtgaccggac aagtagttat gggaccctag cgcacgtgcc cacatggtct
1801 tccccgttcg agagtcaccc tcgattatta tactaatagg tctttccggc
1851 cgcgcagcgg cacctctccc aaaataatca ttgacccaat cttgcatctc
1901 ctgtggaact aaagtgaacg aggagaggtg aaacggagga gcccatggct
1951 ccggagcctt agcaaagata cgctctaggt tagagcgtat gttgtggtga
2001 tgaaggacga agtccttcgg ctgttcttct tttaatattt gaagggctct
2051 ttctaggttg tctgcgttca gaaccttggc gtatgactcg tttgcagtct
2101 gttgaccacc tcttgcagaa cgagcgtcga cctggaattc tccccattca
2151 atggtgtctc catccttgtc gacgtaggac ttgacgtcgg agctcgactt
2201 agctccctgt atgtttggat ggaaatgtgc tgaccttgtt ggggaaacca
2251 agtcgaacaa tctgttattt gtgcagcaga acttcccttc gaattgaagc
2301 aggacatgga gatgaggctg cccatcgtcg tgaagttctc ttgctatctt
2351 gataaacttc ttactgctag gtgtctgcaa cgagataatt tgttcaagag
2401 cagcctcttt tgataaggag cactggggat atgtgaggaa atagtttttg
2451 gcatttatac ggaaacgctt tggtggtggc attcttgtaa ataaaacgat
2501 gtcaccaatt cgctccgctc taaaactcta tagcaattgg tgaattggtg
2551 acaatatata ctagaaccct caatagaact tctaatcctg ttcgcacacg
2601 tggcggccat ccgctataat att