Sequence of DPV Soybean chlorotic spot virus
Soybean chlorotic spot virus DNA-B, complete sequence.
ACC No: JX122966
Dated: 2013-01-29 | Length: 2585 | CRC: 1678900041
ID JX122966; SV 1; circular; genomic DNA; STD; VRL; 2585 BP.
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AC JX122966;
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DT 19-AUG-2012 (Rel. 113, Created)
DT 29-JAN-2013 (Rel. 115, Last updated, Version 3)
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DE Soybean chlorotic spot virus DNA-B, complete sequence.
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KW .
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OS Soybean chlorotic spot virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2585
RX PUBMED; 23053525.
RA Coco D., Calil I.P., Brustolini O.J., Santos A.A., Inoue-Nagata A.K.,
RA Fontes E.P.;
RT "Soybean chlorotic spot virus, a novel begomovirus infecting soybean in
RT Brazil";
RL Arch. Virol. 158(2):457-462(2013).
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RN [2]
RP 1-2585
RA Coco D., Calil I.P., Santos A.A., Inoue-Nagata A.K., Fontes E.P.B.;
RT ;
RL Submitted (31-MAY-2012) to the INSDC.
RL Bioquimica e Biologia Molecular, Universidade Federal de Vicosa,
RL A.v.P.H.Rolfs, s/n, Campus Universitario, Vicosa, MG 36570000, Brasil
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CC ##Assembly-Data-START##
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2585
FT /organism="Soybean chlorotic spot virus"
FT /segment="DNA-B"
FT /host="Glycine max"
FT /isolate="BR:Jai9254.10"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /collection_date="2010"
FT /db_xref="taxon:1221206"
FT CDS 409. .1179
FT /codon_start=1
FT /product="nuclear shuttle protein"
FT /note="NSP"
FT /db_xref="GOA:J7GX64"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR001530"
FT /db_xref="UniProtKB/TrEMBL:J7GX64"
FT /protein_id="AFP87135.1"
FT /translation="MNFTRNRRGLTTTSRRSSYRYPLSRRSYGVKRNNGRRGPNIPNKA
FT HEDGKMSGQCIHENQFGPEFVMAHNSPISTFITYPTLGKTDSSRSRSYIKLKRLRFKGT
FT VKVERLTPNVNMDGLHPKIEGVFSMVVVVDRKPHLSPSGCLHTFDELFGARIHSHGNLA
FT ITASLKDRFYIRHVFKRVMSVEKDSTMVDIEGTTTLSNRRFNCWASFRDFERDSCNGVY
FT ANISKNALLIYYCWMSDNVSKASTFVSFDLEYIG"
FT CDS complement(1270. .2151)
FT /codon_start=1
FT /product="movement protein"
FT /note="MP"
FT /db_xref="GOA:J7H2M9"
FT /db_xref="InterPro:IPR000211"
FT /db_xref="UniProtKB/TrEMBL:J7H2M9"
FT /protein_id="AFP87134.1"
FT /translation="MESQLAYPPAVFNYVESQRDEYQLSHDLTEIVLQFPSTASQLTAR
FT ISRSCMKIDHCVIEYRQQVPINATGSVIVEIHDKRMTDNESLQASWTFPIRCNIDLHYF
FT SSSFFSLKDPIPWKLYYRVCDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILS
FT KQFKESDVDFSHVGYGHYERKLIKSASTTRYGIHSPITIKPGETWATRSTIGVSSTDAD
FT SEVENTTHPYRQLHRLDSSVLDPGESASIVGARRAESSITISMAQLNELVRTTAQECIK
FT SNCIPSEPKCLK"
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SQ Sequence 2585 BP; 738 A; 489 C; 523 G; 835 T; 0 other;
jx122966 Length: 2585 29-JAN-2013 Type: N Check: 4124 ..
1 accggatggc cgcgcgattt tttacccttt tgacgtggcg ctctctctgc
51 cgtccgttta ttttaacttc aattcagttt agcgcatttt tgagttccgc
101 tcacacgtat cgttttttgc gcccgtgtga catgtgcgct aatgtttaac
151 ttttttgact agatttattg gagaccgttg gataaatcta actgatattt
201 tgaacaatca acggtcacat tttaacacca tgggccatta tttgttaagc
251 tgacatcttt aactccattg tactatgtat tgtgacttcg accaattaaa
301 ttgttttttg agagtcaatt taattgctgt gttcattctg ttgtgttata
351 tatctgtgga caatgttatg gaacaataca tatttcataa acatttgatc
401 atttacctat gaatttcacc agaaatagac gtggtttgac aactacttcg
451 cgtagaagta gttataggta tcctttgtct agacgatcgt atggtgtgaa
501 aagaaacaat ggtagacgtg ggccgaatat tccaaacaag gcccatgaag
551 atggaaagat gtcaggtcaa tgcatacatg aaaatcagtt tggtccagaa
601 tttgttatgg cccataattc acccatttca actttcatta cataccctac
651 tctgggtaaa actgactcca gtcgatcaag gtcgtatatt aagttaaaac
701 gtctacgttt taagggaact gtgaaagttg aacgtcttac cccgaatgtt
751 aacatggacg ggctacatcc aaagatagaa ggagtctttt caatggtggt
801 tgtggtcgat cgaaaaccac atttaagccc gtccggatgt ctccacacat
851 tcgatgaatt gtttggtgcc aggatacaca gtcatggaaa tttagctatt
901 actgcctcgt tgaaagaccg attctatata cgccatgtgt ttaaacgcgt
951 gatgtctgtc gagaaagata gcacgatggt ggatattgaa gggacgacaa
1001 cattatctaa taggcgtttt aattgttggg ctagttttag agattttgaa
1051 cgtgattcat gtaacggtgt ttatgccaac attagcaaaa acgccttgtt
1101 aatttactat tgctggatgt cagataatgt gtctaaggca tctacatttg
1151 tatcatttga tctggaatat attggttgag tgataaattg tgtttaaacc
1201 tgtcaagatt tttattaaac gtcaaatgat aatttgcaca cgctattcaa
1251 aaatgcacaa agacattatt tatttaagac acttgggctc ggaaggaata
1301 cagttgcttt taatacattc ttgggccgtt gttctcacca gctcgttcaa
1351 ttgggccatt gatattgtta tactggactc tgccctcctt gcacctacta
1401 ttgatgctga ttcacccggg tctaagacac tgctgtctaa tctatgcagt
1451 tgtctatatg gatgggttgt gttctcaacc tcagagtccg catcggttga
1501 actgactcct atggtgcttc ttgtggccca tgtttctccc ggtttgatcg
1551 ttattgggct gtgtatgcca tatctcgttg tggatgcgga cttgatcaat
1601 ttccgttcat aatgaccata tcccacatga gaaaaatcga catcgctctc
1651 cttgaactgt ttcgataata ttttaactgt tggagccctg aaagggatat
1701 caaccgaatg ctttgctgtg gagagcttta acttcccttt gaatttcgcg
1751 aaatgtgttc tttgatggac atttgtgtcg cacactctat agtataattt
1801 ccagggaatt gggtctttga gcgaaaaaaa agacgacgag aaatagtgga
1851 gatctatgtt acatctaatg ggaaacgtcc atgacgcttg caatgactca
1901 ttgtccgtca ttctcttgtc atgaatctcc actattactg atcctgttgc
1951 gttgatagga acctgttgtc tgtactcaat cacacaatgg tcgattttca
2001 tacaactacg actgattcta gcagttaact gagacgctgt ggacggaaat
2051 tgcaatacta tctcagttag gtcatgagaa agttgatatt catcacgctg
2101 agactctacg taattgaaaa ctgcgggtgg ataagctaac tgagactcca
2151 tagaacacaa taataataaa taaaaatggc cgcgcagcgg aatggcaacg
2201 acgaactgat caaggaacaa ggaaatgttt ttattgctgt gaaaacagca
2251 gctgactaaa ggaaataaga agttgctttc ttattgaata tgtgattctt
2301 gtttggttta aatagacatg accatgatcg tacaacctaa ttattaaata
2351 ttatgtcctc acatattcca ttcatctttt atttacaaag aaaaacaaat
2401 aaaacaatga tattgttaag aagtctggca gtggcatgtt tgtaaataaa
2451 acgatgtcac caattgagct cgagctccgc tctaaaactc tatagcaatc
2501 ggtgaattgg tgacaatata tactagaacc ctctatagaa cttctaatcc
2551 tgttcgcaca cgtggcggcc atccgctata atatt