Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus - Israel isolate JS88 segment DNA-A, complete sequence.
ACC No: JX128100
Dated: 2012-08-20 | Length: 2781 | CRC: -1549669279
ID JX128100; SV 1; circular; genomic DNA; STD; VRL; 2781 BP.
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AC JX128100;
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DT 20-AUG-2012 (Rel. 113, Created)
DT 20-AUG-2012 (Rel. 113, Last updated, Version 1)
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DE Tomato yellow leaf curl virus - Israel isolate JS88 segment DNA-A, complete
DE sequence.
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KW .
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OS Tomato yellow leaf curl virus - Israel
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2781
RA Tang Y.F., He Z.F.;
RT "Molecular characterization of tomato yellow leaf curl begomoviruses in
RT China";
RL Unpublished.
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RN [2]
RP 1-2781
RA Tang Y.F., He Z.F.;
RT ;
RL Submitted (02-JUN-2012) to the INSDC.
RL Plant Protection Research Institute, Guangdong Academy of Agricultural
RL Sciences, Jinying Rd No. 7, Tianhe District, Guangzhou, Guangdong 510640,
RL China
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FH Key Location/Qualifiers
FH
FT source 1. .2781
FT /organism="Tomato yellow leaf curl virus - Israel"
FT /segment="DNA-A"
FT /host="Lycopersicon esculentum"
FT /isolate="JS88"
FT /mol_type="genomic DNA"
FT /country="China"
FT /collected_by="Z.F.He"
FT /collection_date="28-Nov-2011"
FT /db_xref="taxon:66366"
FT gene 148. .498
FT /gene="AV2"
FT CDS 148. .498
FT /codon_start=1
FT /gene="AV2"
FT /product="AV2 protein"
FT /protein_id="AFP89718.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDL
FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV
FT PEAQNIQNVSKP"
FT gene 308. .1084
FT /gene="AV1"
FT CDS 308. .1084
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AFP89717.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW
FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT gene complement(1081. .1485)
FT /gene="AC3"
FT CDS complement(1081. .1485)
FT /codon_start=1
FT /gene="AC3"
FT /product="AC3 protein"
FT /protein_id="AFP89721.1"
FT /translation="MDSHTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI
FT ISIQIRFNHNIRKILGIHKCFLNFRIWTTLQPQTGRFLRVFKYQVLKYLDSLGVISINN
FT VIRAVDHVLYDVLENTINVTETHDIKYKFY"
FT gene complement(1226. .1633)
FT /gene="AC2"
FT CDS complement(1226. .1633)
FT /codon_start=1
FT /gene="AC2"
FT /product="AC2 protein"
FT /protein_id="AFP89720.1"
FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHI
FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ
FT HQEDIGDSQMFSQLPNLDDITASDWSFLKSI"
FT gene complement(1542. .2615)
FT /gene="AC1"
FT CDS complement(1542. .2615)
FT /codon_start=1
FT /gene="AC1"
FT /product="Rep protein"
FT /protein_id="AFP89719.1"
FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNLETPTNKKYIKVC
FT RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK
FT DGDFIDFGVFQIDGKSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL
FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVVSSAARPWRPIGIVIEGDSR
FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFT
FT SINQGPTQDSQEETHKA"
FT gene complement(2171. .2464)
FT /gene="AC4"
FT CDS complement(2171. .2464)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="AFP89722.1"
FT /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTGQHISIRTFRQLRAQ
FT QMSRPTWKKTETSLILEFSKSMANQLEEVSNLPTTHMPRHSIQAVNPRPSIY"
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SQ Sequence 2781 BP; 756 A; 524 C; 611 G; 890 T; 0 other;
jx128100 Length: 2781 20-AUG-2012 Type: N Check: 6594 ..
1 accggatggc cgcgcctttt ctttttatgt ggtccccatg agggttccac
51 agacgtcact gtcaaccaat caaattgcat cctcaaacgt tagataagtg
101 tttatttgtc tttatatact tggtccccaa gtagtttgtc ttgcactatg
151 tgggatccac ttctaaatga atttcctgaa tctgttcacg gatttcgttg
201 tatgttagct attaaatatt tgcaggccgt tgaggaaact tacgagccca
251 atacattggg ccacgattta attagggatc ttatatctgt tgtaagggcc
301 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgtct
351 cgaaggttcg ccgaaggctg aacttcgaca gcccatacag cagccgtgct
401 gctgtcccca ttgtccaagg cacaaacaag cgacgatcat ggacgtacag
451 gcccatgtac cggaagccca gaatatacag aatgtatcga agccctgatg
501 ttcctcgtgg atgtgaaggc ccatgtaaag tccagtctta tgagcaacgg
551 gatgatatta agcatactgg tattgttcgt tgtgttagtg atgttactcg
601 tggatctgga attacccaca gagtgggtaa gaggttctgt gttaaatcga
651 tatatttttt aggtaaagtt tggatggatg aaaatattaa gaagcagaat
701 cacactaatc aggtcatgtt cttcttggtt cgtgatagaa ggccctatgg
751 aaacagccca atggattttg gacaggtttt taatatgttc gataatgagc
801 ccagtaccgc aaccgtgaag aatgatttgc gggataggtt tcaagtgatg
851 aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca
901 ggcattagtt aagagatttt ttagaattaa cagtcacgta acttataatc
951 atcaggaggc agccaagtat gagaaccata ctgaaaacgc cttgttattg
1001 tatatggcat gtacgcatgc ctctaatcca gtgtatgcaa ctatgaaaat
1051 acgcatctat ttctatgatt caatatcaaa ttaataaaat ttatatttta
1101 tatcatgagt ttctgttaca tttattgtgt tttcaagtac atcatacaat
1151 acatgatcaa ctgctctgat tacattatta attgaaatta caccaagact
1201 atctaaatac ttaagaactt gatatttaaa tactcttaag aaacgaccag
1251 tctgaggctg taatgtcgtc caaattcgga agttgagaaa acatttgtga
1301 atccccaata tcttcctgat gttgtggttg aatcttatct gaatggaaat
1351 gatgtcgtgg ttcattagaa atggcctctg gctgtgttct gttatcttga
1401 aatagagggg attgtttatc tcccagataa aaacgccatt ctctgcttga
1451 ggagcagtga tgagttcccc tgtgtgtgaa tccatgattg ttgcagttga
1501 tgtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt
1551 atgggtttct tcttggctat cttgtgttgg accttgattg atacttgtga
1601 acagtggctc gtagagggtg acgaaggttg cattcttgag agcccaattt
1651 ttcaaggata tgtttttttc ttcgtctaga tattccctat atgaggaggt
1701 aggtcctgga ttgcagagga agatagtggg aattccccct ttaatttgaa
1751 tgggcttccc gtactttgtg ttgctttgcc agtctctctg ggcccccatg
1801 aattccttga agtgttttaa ataatgcggg tctacgtcat caatgacgtt
1851 gtaccacgca tcattactgt acacctttgg gcttaggtct agatgtccac
1901 ataaataatt atgtgggcct agagacctgg cccacattgt tttgcctgtt
1951 ctgctatcac cctcaatgac aatacctatc ggtctccatg gccgcgcagc
2001 ggaagatacg acgttctcgg cgacccactc ttcaagttca tctggaactt
2051 gattaaaaga agaagaaaga aatggagaaa cataaacttc taaaggagga
2101 ctaaaaatcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata
2151 gtcctttggg gccttctctt ttaatatatt gagggcctcg gatttactgc
2201 ctgaattgag tgcctcggca tatgcgtcgt tggcagattg ctgacctcct
2251 ctagctgatt tgccatcgat ttggaaaact ccaaaatcaa tgaagtctcc
2301 gtctttttcc acgtaggtct tgacatctgt tgagctctta gctgcctgaa
2351 tgttcggatg gaaatgtgct gacctgtttg gggataccag gtcgaagaac
2401 cgttggttct tacattggta tttgccttcg aattggataa gcacatggag
2451 atgtggttcc ccattctcgt ggagttctct gcaaactttg atgtattttt
2501 tatttgttgg ggtttctagg ttttttaatt gggaaagggc ttcctcttta
2551 gagagagaac aattgggata tgttaggaaa taatttttgg catatatttt
2601 aaataaacga ggcatgttga aatgaattgg tgtccctcaa agctctatgg
2651 caatcggtgt ctcggtgtct tacttatacc tggacaccta atggctattt
2701 ggtaattttg taaaagtaca attcaattca aaattcaaaa ttcaaaaatc
2751 aaatcattaa agcggtcatc cgtataatat t