Sequence of DPV Papaya leaf curl China virus
Papaya leaf curl China virus isolate GX88 segment DNA-A, complete sequence.
ACC No: JX128101
Dated: 2012-08-20 | Length: 2738 | CRC: -1278300592
ID JX128101; SV 1; circular; genomic DNA; STD; VRL; 2738 BP.
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AC JX128101;
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DT 20-AUG-2012 (Rel. 113, Created)
DT 20-AUG-2012 (Rel. 113, Last updated, Version 1)
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DE Papaya leaf curl China virus isolate GX88 segment DNA-A, complete sequence.
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KW .
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OS Papaya leaf curl China virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2738
RA Tang Y.F., He Z.F.;
RT "Molecular characterization of tomato yellow leaf curl begomoviruses in
RT China";
RL Unpublished.
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RN [2]
RP 1-2738
RA Tang Y.F., He Z.F.;
RT ;
RL Submitted (02-JUN-2012) to the INSDC.
RL Plant Protection Research Institute, Guangdong Academy of Agricultural
RL Sciences, Jinying Rd No. 7, Tianhe District, Guangzhou, Guangdong 510640,
RL China
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FH Key Location/Qualifiers
FH
FT source 1. .2738
FT /organism="Papaya leaf curl China virus"
FT /segment="DNA-A"
FT /host="Lycopersicon esculentum"
FT /isolate="GX88"
FT /mol_type="genomic DNA"
FT /country="China"
FT /collected_by="Z.F.He"
FT /collection_date="07-Jan-2012"
FT /db_xref="taxon:229634"
FT gene 131. .481
FT /gene="AV2"
FT CDS 131. .481
FT /codon_start=1
FT /gene="AV2"
FT /product="AV2 protein"
FT /protein_id="AFP89724.1"
FT /translation="MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDL
FT ISVIRARDYVEASRRYSHFHSRIQGASPAELRQPVCQPCCCPHCPRHKQKEVMGESAHV
FT PKAQDLPDVQKP"
FT gene 291. .1064
FT /gene="AV1"
FT CDS 291. .1064
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AFP89723.1"
FT /translation="MSKRPADIVISTPASKVRRRLNFDSPYASRAAAPTVLVTNKRRSW
FT VNRPMYRKPRIYLMYKSPDVPRGCEGPCKVQSYEQRHDVSHVGKVICVSDVTRGNGLTH
FT RVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPYGNPQDFGQVFNMYDNE
FT PSTATVKNDNRDRFQVLRRFQATVTGGQYASKEQAIVRKFMKVNNHVTYNHQEAAKYDN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDSVQN"
FT gene complement(1061. .1465)
FT /gene="AC3"
FT CDS complement(1061. .1465)
FT /codon_start=1
FT /gene="AC3"
FT /product="AC3 protein"
FT /protein_id="AFP89727.1"
FT /translation="MDFRTGELLTATQCESGVYIWTIKNPLYFKITKHHERPFNTNHDI
FT ITIQIQFNHNXRKALGIHQCFLIFQIWTRLRPQTWRFLRVFRVQCMKYLYNLGVISINN
FT VIRACDHVLWDVLEKTEYVTHSNIIKFNLY"
FT gene complement(1206. .1613)
FT /gene="AC2"
FT CDS complement(1206. .1613)
FT /codon_start=1
FT /gene="AC2"
FT /product="AC2 protein"
FT /protein_id="AFP89726.1"
FT /translation="MRNSSPSTAHCTQVPIKVQHKIAKKRPVRRRRVDLTCGCSYYFGL
FT DCANHGFSHRGITHCNSMREWRVYLDDQKSPIFQDNQAPRETIQHQPRHHNDPNTIQPQ
FT XEESVGNTPVFSNLPDLDSLTSSDLAFLKSI"
FT gene complement(1513. .2601)
FT /gene="AC1"
FT CDS complement(1513. .2601)
FT /codon_start=1
FT /gene="AC1"
FT /product="Rep protein"
FT /protein_id="AFP89725.1"
FT /translation="MAPPNKFRINAKNYFLTYPHCSLTKEEALSQIKTLETPVNKLFIR
FT ICRELHEDGSPHLHVLIQFEGKFQCKNQRFFDLTSPSRSAHFHPNIQAAKSSTDVKSYM
FT DKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKASALNILKEKAPKDYVLQFH
FT NLNNNLDRIFSPPQEVFVCPFLSSSFDQVPEELEDWVSENVSGAAARAWRPKSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPRVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLNEDKNSALKDWALKNAEFITLNSPL
FT YSGTNQSATQNSQEEARPETES"
FT gene complement(2151. .2444)
FT /gene="AC4"
FT CDS complement(2151. .2444)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="AFP89728.1"
FT /translation="MGLLTCMCSSNSKENSSVKIKDSSISHPQAGQHISIRTFRQLKAQ
FT QMSSPTWTKTETCLIMEFSRSMEDRLEEVANLPTTHMPRQSIQGPKLRPSIY"
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SQ Sequence 2738 BP; 727 A; 547 C; 588 G; 875 T; 1 other;
jx128101 Length: 2738 20-AUG-2012 Type: N Check: 9365 ..
1 accggatggc cgcgattttt ttatatggtc cccaccacta agaaatgtcc
51 tccacttaga acgccccctc aaagcctatt taattcaaat ccgttataaa
101 tacttggtcc ccaagtagtc actttaaaat atgtgggatc ctttactgaa
151 tgagtttcct gaaaccgtac atggtttcag gtgtatgtta gccatcaagt
201 atttgcagct ggtagaaaat acatactccc ctgatacttt agggtacgat
251 ttaattcgtg atttaatttc ggttattcgt gctagagact atgtcgaagc
301 gtcccgccga tatagtcatt tccactcccg catccaaggt gcgtcgccgg
351 ctgaacttcg acagcccgta tgccagccgt gctgctgccc ccactgtcct
401 cgtcacaaac aaaaggaggt catgggtgaa tcggcccatg taccgaaagc
451 ccaggatcta cctgatgtac aaaagccctg atgttcctcg tggttgtgaa
501 ggtccatgta aggttcagtc ttatgaacag cgtcatgatg tatcgcatgt
551 aggtaaggtc atttgtgtgt cggatgttac tcgtggtaac gggttgactc
601 atcgagttgg aaagaggttt tgtgttaagt ctgtctatgt tttgggcaag
651 atatggatgg atgagaacat taagaccaag aatcatacta atactgtgat
701 gttttttcta gttcgtgata ggagaccata tgggaatcca caggattttg
751 gtcaggtgtt taatatgtac gataatgagc ctagcactgc tactgttaag
801 aacgacaata gagatcgctt tcaagttcta cgccgttttc aggcgactgt
851 tactggtggt cagtatgcta gtaaggagca ggcaatagtc aggaaattca
901 tgaaggtgaa caaccatgtt acttataatc atcaagaagc tgcgaagtat
951 gacaatcaca cagagaatgc tcttttgttg tatatggcat gtactcatgc
1001 tagtaatcca gtgtatgcta ctttgaagat cagaatctat ttctatgatt
1051 ctgttcagaa ttaataaaga ttgaatttta ttatatttga atgtgttaca
1101 tattctgttt tttccaatac atcccataat acatgatcac atgctctaat
1151 tacattgtta atactaatta cacccaaatt atataaatat ttcatacatt
1201 gaaccctaaa tactcttaag aaacgccaag tctgaggacg taagcgagtc
1251 cagatctgga agattagaaa acactggtgt attcccaacg ctttcctcas
1301 gttgtggttg aattgtattt ggatcgttat gatgtcgtgg ttggtgttga
1351 atggtctctc gtggtgcttg gttatcttga aatatagggg atttttgatc
1401 gtccagatat acacgccact ctcgcattga gttgcagtga gtaattcccc
1451 tgtgcgaaaa tccatgattt gcacaatcta atccgaagta gtatgagcac
1501 ccgcacgtta gatcaactct ccgtctccgg acgggcctct tcttggctat
1551 tttgtgttgc actttgattg gtacctgagt acaatgggct gttgagggtg
1601 atgaattccg cattctttaa tgcccaatct tttaaagctg aatttttatc
1651 ctcattcaag tactctttat atgatgatgt tgggcctgga ttgcaaagga
1701 agatagttgg aattccacct ttaatttgaa ttggtttccc gtacttagtg
1751 ttgctttgcc agtccctttg ggcccccatg aattctttaa agtgctttag
1801 atagtggggg tctacgtcat caatgacgtt ataccaagcc tcattactgt
1851 atactcttgg gcttagatca agatgtccac acaaataatt gtgtggtccc
1901 agtgatctgg cccacattgt tttacccgta cgactatcac cttctatcac
1951 aatgcttttc ggtctccatg cccgcgcagc ggcaccactc acattctcgg
2001 aaacccagtc ttcaagttct tctggaactt gatcgaaaga agaagacaaa
2051 aaaggacaaa caaacacctc ttgtggagga ctaaaaatcc tatctaaatt
2101 attatttaaa ttatgaaact gtaaaacata atctttagga gctttctcct
2151 ttagtatatt gagggccgaa gctttggacc ctgaattgat tgcctcggca
2201 tatgcgtcgt tggcagattg gcaacctcct ctagccgatc ttccatcgat
2251 ctggaaaact ccatgatcaa gcacgtctcc gtctttgtcc atgtaggact
2301 tgacatctgt tgagctttta gctgcctgaa tgttcggatg gaaatgtgct
2351 gacctgcttg gggatgtgag atcgaagaat ctttgatttt tacactggaa
2401 ttttccttcg aattggatga gcacatgcag gtgaggagac ccatcttcgt
2451 gtaattctct gcagatgcga ataaatagtt tatttactgg ggtttctagg
2501 gttttaattt gtgaaagtgc ttcttcttta gtgagagagc agtgtggata
2551 tgtgaggaaa taatttttgg cattaattct gaatttattt gggggagcca
2601 ttgactggtc aatcggtgtc tctcaaactt ggctatgcaa ttggtgtctg
2651 gtgtcttatt tatatgtaga caccaaatgg cattatcgta attcccataa
2701 gaatttcaaa atccaaaagc ggccatccgt ataatatt