Sequence of DPV Watermelon chlorotic stunt virus
Watermelon chlorotic stunt virus segment DNA-A, complete sequence.
ACC No: JX131283
Dated: 2012-08-26 | Length: 2753 | CRC: 790324033
ID JX131283; SV 1; circular; genomic DNA; STD; VRL; 2753 BP.
XX
AC JX131283;
XX
DT 26-AUG-2012 (Rel. 113, Created)
DT 26-AUG-2012 (Rel. 113, Last updated, Version 1)
XX
DE Watermelon chlorotic stunt virus segment DNA-A, complete sequence.
XX
KW .
XX
OS Watermelon chlorotic stunt virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2753
RA Anfoka G.H., Haj Ahmad F.W., Adwan H.J., Abu Mallouh S.A., Al-Taleb M.M.,
RA Odeh W.H.;
RT "Sinapis arvensis is a natural host of five begomoviruses in Jordan";
RL Unpublished.
XX
RN [2]
RP 1-2753
RA Anfoka G.H., Haj Ahmad F.W., Al-Taleb M.M.;
RT ;
RL Submitted (03-JUN-2012) to the INSDC.
RL Department of Biotechnology, Faculty of Agricultural Technology, Al-Balqa'
RL Applied University, Al-Salt 19117, Jordan
XX
CC GenBank Accession Numbers JX131283-JX131284 represent the complete
CC genome of Watermelon chlorotic stunt virus.
CC ##Assembly-Data-START##
CC Assembly Method :: CLC Main Workbench v. 6.6.2
CC Coverage :: Complete
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1. .2753
FT /organism="Watermelon chlorotic stunt virus"
FT /segment="DNA-A"
FT /host="Sinapis arvensis"
FT /mol_type="genomic DNA"
FT /country="Jordan"
FT /collection_date="2011"
FT /db_xref="taxon:35341"
FT CDS 156. .515
FT /codon_start=1
FT /product="AV2"
FT /protein_id="AFQ00058.1"
FT /translation="MWDPLLNDFPESVHGFRCMLAVKYLQAVESTYEPNTLGHELIRDL
FT ILVLRARDYGEANRRYSHFHSRFEGSSKTELRQPLHEPCSCPHCPRHKQASTMGQQAHV
FT SKAQDVQDVSKPRCP"
FT CDS complement(220. .987)
FT /codon_start=1
FT /product="AC5"
FT /protein_id="AFQ00059.1"
FT /translation="MILILRSLLVVVYHMIVHTIEAFYQRLLLHPRGATDHGGMKLSHN
FT LETIAKIVLNCRSAGLVVEHIKNLSEVHWTGPIWTTITNKKEHDLIRMILFFYVLIHPD
FT LAKNIYRLHTKPFSDTMSDSTPPSNITDTPDDTGVFNVVSLFVRLNFARAFAALRDIWA
FT SIHPVHPGLSIHGPVGPLSTLACDEDSGGKSTAHVGAVEVQFSTNLRNGSGNENISCSL
FT RHNHGPGGQGSDRGSIRGPKYWARRSIQRPAST"
FT CDS 316. .1092
FT /codon_start=1
FT /product="AV1"
FT /protein_id="AFQ00060.1"
FT /translation="MAKRTGDILISTPVSKVRRKLNFDSPYMSRALAPTVLVTSKRRQW
FT ANRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRRSGITH
FT RVGKRFCVKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRFQVMRKFHATVVGGPSGMKEQALVKRFYRVYNHVVYNHQETAKYE
FT NHTENAMLLYMACTHASNPVYATLKIRIYFYDSVTN"
FT CDS complement(1089. .1493)
FT /codon_start=1
FT /product="AC3"
FT /protein_id="AFQ00061.1"
FT /translation="MDSRTGEYITADQAWNGVFTWKINNPLYFTIIDHHQRPFLCRHDI
FT IHMQIRFNHNLRRALGIHKAFLNFRIWTTLRPQTGRFLRVFRTQVLKYLDMLGVISLNL
FT VVRAVSHVLENVLVGTIDVQENHVIKFDLY"
FT CDS complement(1234. .1641)
FT /codon_start=1
FT /product="AC2"
FT /protein_id="AFQ00062.1"
FT /translation="MPNSSSSQNLSSQPSIKIRHRLAKKKTIRRRRIDLKCGCSYYLHI
FT SCQNHGFSHRGIHYCGSSMEWRVYLEDKQPPIFHDNRSPPTPLSLPSRHNTHANTIQPQ
FT PSEGVGDSQSFPELPNLDDFTASDWSFLKGI"
FT CDS complement(1541. .2626)
FT /codon_start=1
FT /product="AC1"
FT /protein_id="AFQ00063.1"
FT /translation="MRPPRFRIQAKNIFLTYPRCSLSKEELLSFLVGLSLPSNLKYVKV
FT CRELHQNGEPHLHVLLQFAGKITITDNRLFDHVHPSRSACFHPNIQSAKSSTDVKSYLD
FT KDGDTVEWGKFQIDGRSSRGGQQTANDAYATALNMSNKGEAMSVIKELAPKDFVLHYHN
FT IKSNLDRIFEEPVAPFVCPFPMSSFTLLPPELVDWASTNVCSSAARTWRPKSIVVEGES
FT RTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHLKEFMGAQRDWQ
FT SNTKYGKPIQIKGGIPTIFLCNPGPSSSYKEFLEEEKNYALKEWADKNAEFVFLTEPLF
FT STEHQDQTQTRQKEDDSTTTH"
FT CDS complement(2329. .2472)
FT /codon_start=1
FT /product="AC4"
FT /protein_id="AFQ00064.1"
FT /translation="MGNLISMCSCSSPERSPSQTIASSIMYTQAVAPVSTPTYKALSPV
FT QT"
XX
SQ Sequence 2753 BP; 702 A; 624 C; 680 G; 747 T; 0 other;
jx131283 Length: 2753 26-AUG-2012 Type: N Check: 4967 ..
1 accggatgcc cgcggagccc aaaagatgac cccacaggac acgtgcacca
51 ataaaattgc gtgctttgag gtaagttagc tggaaatggg gttttgaaag
101 cgacaagtca tacgagtcct atttatactg ctgctgcgga tcaacttttg
151 tcagtatgtg ggatccattg cttaatgact ttcccgagtc ggttcacggc
201 tttcggtgta tgctagctgt caagtacttg caggccgttg aatcgaccta
251 cgagcccaat actttgggcc acgaattgat ccgcgatctg atccttgtcc
301 tccgggcccg tgattatggc gaagcgaaca ggagatattc tcatttccac
351 tcccgtttcg aaggttcgtc gaaaactgaa cttcgacagc ccctacatga
401 gccgtgctct tgcccccact gtcctcgtca caagcaagcg tcgacaatgg
451 gccaacaggc ccatgtatcg aaagcccagg atgtacagga tgtatcgaag
501 cccagatgtc cctaagggct gcgaaggccc gtgcaaagtt cagtcgtacg
551 aacaacgaga cgacgttaaa cacaccggta tcgtccggtg tgtcagtgat
601 gttactagga ggagtggaat cactcatcgt gtcggaaaaa ggttttgtgt
651 gaagtctata tatattcttg gcaagatctg gatggatgag aacataaaaa
701 aacaaaatca tacgaatcag gtcatgttct ttcttgttcg tgatcgtcgt
751 ccatatgggt ccagtccaat ggacttcgga caggttttta atatgttcga
801 caacgagccc agcactgcga cagttaagaa cgatcttcgc gatcgtttcc
851 aagttatgcg aaagtttcat gccaccgtgg tcggtggccc ctctgggatg
901 aaggagcagg cgctggtaaa acgcttctat cgtgtgtaca atcatgtggt
951 atacaaccac caagagactg cgaagtatga gaatcatact gagaatgcga
1001 tgttattgta tatggcgtgt acacacgcat cgaatcctgt gtatgcaaca
1051 ttgaaaattc gtatatactt ttatgactca gttacgaatt aataaagatc
1101 gaattttatt acgtgatttt cttgtacatc gattgtccca acaaggacat
1151 tttccaatac atgacttacg gccctaacaa ccaaatttag actaattaca
1201 cctaacatat cgaggtattt tagaacctgc gttctaaata cccttaagaa
1251 acgaccagtc tgaggccgta aagtcgtcca gattcggaag ttcaggaaag
1301 ctttgtgaat ccccaacgcc ctccgaaggt tgtggttgaa tcgtatttgc
1351 atgtgtatta tgtcgtgacg gcaaagaaag gggcgttggt ggtgatctat
1401 tatcgtgaaa tatagggggt tgtttatctt ccaggtaaac acgccattcc
1451 atgcttgatc cgcagtaatg tattccccgg tgcgagaatc catgattctg
1501 gcacgagata tgcaggtaat atgagcaacc gcactttaga tcaatgcgtc
1551 gtcgtcgaat cgtcttcttt ttggcgagtc tgtgtctgat cttgatgctc
1601 ggttgagaag agaggttctg tgaggaagac gaattcggca ttcttgtccg
1651 cccactcttt tagtgcatag ttcttctcct cctctagaaa ctctttatac
1701 gaagaagatg ggcccggatt gcaaaggaag atagtgggaa ttccgccttt
1751 aatttgaatc ggctttccgt atttcgtgtt gctttgccaa tcacgctggg
1801 cccccatgaa ctcttttaag tgctttagat aatgcgggtc gacgtcatca
1851 atgacgttgt accacgcatc gttgctgtat atctttggac tcaggtcaag
1901 gtgaccacat aggtaattat gtggtcctaa tgatcgggcc cacatcgtct
1951 ttcccgtacg actctcaccc tctaccacga tactcttagg tctccacgtc
2001 cgcgcagcgg aagagcaaac gttcgttgat gcccaatcaa cgagctcagg
2051 cggtagcaac gtgaaagacg acatcggaaa cggacaaacg aaaggagcca
2101 caggttcttc gaagattcga tccaaatttg acttgatatt gtggtagtga
2151 aggacgaagt ccttcggtgc gagctccttg atcacagaca tagcctcccc
2201 tttattactc atgttaagcg ccgtggcgta ggcgtcgtta gctgtctgtt
2251 gtccacccct tgaagatcga ccgtcgattt gaaacttgcc ccactcgacg
2301 gtgtcgccgt ccttgtccag gtaagacttc acgtctgtac tggacttagc
2351 gctttgtatg ttggggtgga aacaggcgct acggcttggg tgtacatgat
2401 cgaagaggcg attgtctgtg atggtgatct ttccggcgaa ctgcaggagc
2451 acatggagat gaggttcccc attctggtgc agttctctgc acaccttgac
2501 gtattttagg ttcgacggaa gggagaggcc gactaaaaag gaaagtagct
2551 cttctttgga tagagagcat ctgggatatg tgaggaaaat gtttttcgct
2601 tggattctaa aacgcggagg cctcatgttg accagtcaat tggagacacc
2651 ccccagatca ctaacccctg tatattggag actggagaca atttttagaa
2701 gtagtaagag gtactactag gattttgaca cgtagcgggc atcctataat
2751 att