Sequence of DPV Sida golden mosaic Buckup virus
Sida golden mosaic Buckup virus-[Jamaica:St. Elizabeth:2004] clone pBuA9, complete genome.
ACC No: JX162591
Dated: 2012-08-26 | Length: 2627 | CRC: -652666306
ID JX162591; SV 1; circular; genomic DNA; STD; VRL; 2627 BP.
XX
AC JX162591;
XX
DT 26-AUG-2012 (Rel. 113, Created)
DT 26-AUG-2012 (Rel. 113, Last updated, Version 1)
XX
DE Sida golden mosaic Buckup virus-[Jamaica:St. Elizabeth:2004] clone pBuA9,
DE complete genome.
XX
KW .
XX
OS Sida golden mosaic Buckup virus-[Jamaica:St. Elizabeth:2004]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2627
RA Martin D.P.;
RT "The molecular characterisation of a Sida-infecting begomovirus from
RT Jamaica and possible evidence for its recombinant origin";
RL Unpublished.
XX
RN [2]
RP 1-2627
RA Stewart C.S., Kon T., Gilbertson R.L., Roye M.E.;
RT ;
RL Submitted (10-JUN-2012) to the INSDC.
RL The Biotechnology Centre, The University of the West Indies, Mona Road,
RL Mona, St. Andrew Kgn 7, Jamaica
XX
FH Key Location/Qualifiers
FH
FT source 1. .2627
FT /organism="Sida golden mosaic Buckup virus-[Jamaica:St.
FT Elizabeth:2004]"
FT /host="Sida sp."
FT /isolate="Jamaica:St. Elizabeth:2004"
FT /mol_type="genomic DNA"
FT /country="Jamaica"
FT /collection_date="2004"
FT /clone="pBuA9"
FT /db_xref="taxon:929769"
FT misc_feature 23. .2488
FT /note="IR; contains conserved sequences essential for viral
FT replication"
FT gene 210. .965
FT /gene="CP"
FT CDS 210. .965
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /function="responsible for viral encapsidation"
FT /protein_id="AFP99136.1"
FT /translation="MSKRDGSWRSIAGMSKVKRTLNFSPRGGGGPTSSRAAEWVNRPMY
FT RKPRIYRTLKTPGVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF
FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT KNDLRDRYQVMHKFYGKVTGGQYASNEQAIVKRFWKVYNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSITN"
FT gene complement(962. .1360)
FT /gene="REn"
FT CDS complement(962. .1360)
FT /codon_start=1
FT /gene="REn"
FT /product="replication enhancer"
FT /function="enhances replication"
FT /protein_id="AFP99138.1"
FT /translation="MDSRTGELITVPQAENGVYTWEIENPLHFKMYQVEDPLYTNTRIY
FT TIQIRFNHNLRKALHLHKAFLNFQVWTISMTASGSTYLARFSRLVNLYLDRLGVISINN
FT VIRAVRFATNRSYIEHVLENHSIKFKIY"
FT gene complement(1107. .1496)
FT /gene="TrAP"
FT CDS complement(1107. .1496)
FT /codon_start=1
FT /gene="TrAP"
FT /product="transcriptional activator protein"
FT /function="activates the transcription of the CP and NSP"
FT /protein_id="AFP99139.1"
FT /translation="MRSSSPSHPPSIKQKHKQAKKRAIRRRRIDLECGCSIYFHIGCTG
FT HGFTHRGTHHCTSGREWRIYLGDRKSPTFQDVPSRGPVVHEHQDIHHTNTVQPQPEESV
FT ASPQSLPELPSLDDIDDSFWVDLFS"
FT gene complement(1408. .2544)
FT /gene="Rep"
FT CDS complement(1408. .2544)
FT /codon_start=1
FT /gene="Rep"
FT /product="replication-associated protein"
FT /function="responsible for viral replication"
FT /protein_id="AFP99137.1"
FT /translation="MRKFERAQPGYTLIITKMPSIKRFKVSAKNYFLTYPQCSLTKEEA
FT LSQLQNLTTPVNKKFIKVCRELHENGEPHLHVLIQFEGKYQCTNNRFFDMVSPTRSVHF
FT HPNIQGAKSSSDVKSYVEKDGDTIEWGQFQIDGRSARGGQQSANDSYAKALNAGSAEAA
FT LQIIREEQPQHFFLQNHNLVANATRIFQKAPEPWVPPFQLSSFTNVPDEMQEWADGYFG
FT GGSAARPDRPVSIIVEGDSRTGKTMWARALGPHNYLSGHLDFNSRVFSNEVEYNVIDDV
FT APQYLKLKHWKELLGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEEN
FT TGLKNWTLKNALFITLTSALYQTETQASQEEGHQETAD"
FT gene complement(2079. .2336)
FT /gene="AC4"
FT CDS complement(2079. .2336)
FT /codon_start=1
FT /gene="AC4"
FT /product="aC4"
FT /function="potential gene silencing suppressor"
FT /protein_id="AFP99140.1"
FT /translation="MGSLISTFSYSSKASTSARITDSSIWCPQPGQYISIRTYRELNPA
FT PTSSPTSRRTETPSNGGNSKSTADLLEEVSSQLTIHMPRR"
XX
SQ Sequence 2627 BP; 637 A; 592 C; 632 G; 766 T; 0 other;
jx162591 Length: 2627 26-AUG-2012 Type: N Check: 8104 ..
1 accggatggc cgcgcatcgg tgtacgctcc cccccccgcg cggtcccccc
51 accccgcgcg atctttaatt tgaattaaag atggaccaga cgctctcgtc
101 caatcataac gcgtctgacg agtctatata ttttaaacaa cttgggcgct
151 aagttgttgt gtgaccgtta taaattaaat atgatttggc ccactgtctt
201 taactcaaaa tgtctaagcg cgatggctct tggcgctcta tcgcgggaat
251 gtcaaaagtg aaacgcactt tgaatttctc ccctcgtgga ggtggtgggc
301 cgacaagttc aagggccgct gaatgggtga acaggcccat gtacaggaag
351 cccaggatat accggacgct aaaaacaccc ggagtgccca gaggctgtga
401 aggcccgtgt aaggtccagt cgtatgagca acgccacgac atctctcatg
451 tgggaaaggt catgtgcatc tccgatgtga cacgtggtaa tggcattacc
501 catcgtgtgg gtaagcgttt ttgtgttaag tctgtgtata tccttggtaa
551 gatatggatg gacgagaaca tcaagctcaa gaaccacacg aacagtgtca
601 tgttctggtt ggtcagagac cgtagaccct atggcacgcc aatggatttt
651 ggccaagtgt tcaacatgtt cgacaatgag cctagcactg ctacggtgaa
701 gaacgatctt cgtgatcgtt atcaagtgat gcacaagttc tatggcaagg
751 tgacaggtgg acagtatgcc agcaacgagc aggctatagt caaacgattc
801 tggaaggtct acaatcatgt ggtctacaac catcaagagg ctggcaagta
851 cgagaatcat acggagaacg ccctgttatt gtatatggca tgtactcatg
901 cgtctaatcc cgtgtatgca actttgaaga tcagaatcta tttctacgat
951 tcgatcacta attaataaat tttgaatttt attgaatgat tttccagtac
1001 atgttcgata tacgatctgt ttgtcgcgaa tcgtacagct ctaattacat
1051 tgttaattga aatcacgcct aatctatcta aatataaatt aactaagcga
1101 ctaaatctag ctaaataagt cgacccagaa gctgtcatcg atatcgtcca
1151 gacttggaag ttcaggaagg ctttgtggag atgcaacgct ttcctcaggt
1201 tgtggttgaa ccgtatttgt atggtgtata tcctggtgtt cgtgtacaac
1251 gggtcctcta cttggtacat cttgaaatgt aggggatttt ctatctccca
1301 ggtatatacg ccattctctg cctgaggtac agtgatgagt tccccggtgc
1351 gtgaatccat gaccggtgca gcctatgtgg aagtatatgg agcaaccgca
1401 ctccagatca atccgccgtc tcctgatggc cctcttcttg gcttgcttgt
1451 gtttctgttt gatagagggc ggatgtgagg gtgatgaaga gcgcattctt
1501 caatgtccag ttcttgagac ctgtattttc ctctttgtct aggaagtctt
1551 tataactggc accctcacct ggattgcaaa gcacgattga tggaatccct
1601 cctttaattt gaactggctt gccgtatttg caatttgact gccagtcctt
1651 ctgggccccc agaagttctt tccagtgctt tagctttaaa tattgcggtg
1701 cgacgtcatc aatgacgtta tactccactt cgtttgaaaa aactcgggaa
1751 ttgaagtcca ggtgtccact aaggtaattg tgtgggccta atgcacgtgc
1801 ccacatcgtc ttccctgtcc tcgaatcacc ttccactatg atactaactg
1851 gtctgtccgg ccgcgcagcg gaacctcctc caaaataacc gtccgcccac
1901 tcttgcatct catcgggaac gttagtgaat gacgagagtt gaaacggagg
1951 gacccacggt tccggagcct tttgaaatat tctggttgcg ttagcaacca
2001 ggttgtggtt ctggaggaag aaatgttgcg gttgttcttc ccttattatt
2051 tgcagagctg cctctgctga accggcgttc aacgccttgg catatgaatc
2101 gttagctgac tgctgacctc ctctagcaga tctgccgtcg atttggaatt
2151 gcccccattc gatggtgtct ccgtccttct cgacgtagga cttgacgtcg
2201 gagctggatt tagctccctg tatgttcgga tggaaatgta ctgacctggt
2251 tggggacacc atatcgaaga atctgttatt cgtgcactgg tacttgcctt
2301 cgaactgtat gagaacgtgg agatgaggct ccccattttc gtgtaattct
2351 ctgcaaacct tgatgaactt cttgtttact ggagttgtta ggttttgtaa
2401 ttgggaaagt gcttcttctt tagtaagaga gcactgggga tatgtgagga
2451 aatagttttt agctgagact ttgaaacgtt taatcgatgg catttttgta
2501 ataataaggg tgtaccccgg ttgagctctc tcaaactttc tcattcaatt
2551 ggggtaatgg gttacaatat atagtataac cctcatttac tgatttgcta
2601 cacgtggcgg ccatccgcta taatatt