Sequence of DPV Sida golden mosaic Braco virus
Sida golden mosaic Braco virus-[Jamaica:Liguanea:2008] clone pBrA4, complete genome.
ACC No: JX162595
Dated: 2012-08-26 | Length: 2600 | CRC: -1161042103
ID JX162595; SV 1; circular; genomic DNA; STD; VRL; 2600 BP.
XX
AC JX162595;
XX
DT 26-AUG-2012 (Rel. 113, Created)
DT 26-AUG-2012 (Rel. 113, Last updated, Version 1)
XX
DE Sida golden mosaic Braco virus-[Jamaica:Liguanea:2008] clone pBrA4,
DE complete genome.
XX
KW .
XX
OS Sida golden mosaic Braco virus-[Jamaica:Liguanea:2008]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2600
RA Martin D.P.;
RT "Mixed begomoviral infection of Sida spp. in Jamaica and possible evidence
RT of recombination";
RL Unpublished.
XX
RN [2]
RP 1-2600
RA Stewart C.S., Kon T., Gilbertson R.L., Roye M.E.;
RT ;
RL Submitted (11-JUN-2012) to the INSDC.
RL The Biotechnology Centre, The University of the West Indies, Mona Road,
RL Mona, St. Andrew Kgn 7, Jamaica
XX
FH Key Location/Qualifiers
FH
FT source 1. .2600
FT /organism="Sida golden mosaic Braco
FT virus-[Jamaica:Liguanea:2008]"
FT /host="Sida sp."
FT /isolate="Jamaica:Liguanea:2008"
FT /mol_type="genomic DNA"
FT /country="Jamaica"
FT /collection_date="2008"
FT /clone="pBrA4"
FT /db_xref="taxon:929767"
FT misc_feature 16. .2461
FT /note="IR; contains conserved sequences essential for viral
FT replication"
FT gene 183. .938
FT /gene="CP"
FT CDS 183. .938
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /function="responsible for viral encapsidation"
FT /protein_id="AFP99152.1"
FT /translation="MTKRDSSWRSIAGTSKVRRTLNFSPRGGGGPKQTRASEWVNRPMY
FT RKPLIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF
FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATV
FT KNDLRDRYQVMHRFYGKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSITN"
FT gene complement(935. .1333)
FT /gene="REn"
FT CDS complement(935. .1333)
FT /codon_start=1
FT /gene="REn"
FT /product="replication enhancer"
FT /function="enhances replication"
FT /protein_id="AFP99151.1"
FT /translation="MDSRTGELITARQAENGVYIWEIENPLYFKIDRVEELLYTRTRVY
FT HVQIRFNHNLRRVLGLHKAYLNFQVWTKSMTASGSTYLVRFRRLVNMYLDNLGVISINN
FT VIRAVQFATDNAHVSYVIEHHEIKFKFY"
FT gene complement(1080. .1469)
FT /gene="TrAP"
FT CDS complement(1080. .1469)
FT /codon_start=1
FT /gene="TrAP"
FT /product="transcriptional activator protein"
FT /function="activates the transcription of the CP and NSP"
FT /protein_id="AFP99150.1"
FT /translation="MLNSSPSQPPCIKKAHRQAKRRAIRRRRIDLDCGCSIYLHIGCTG
FT HGFTHRGTHHCTSGREWRLYLGDRKSPVFQDRQSRGTTIHQDQSVPRPDTIQPQPEESV
FT GSPQSLPELPSLDEIDDSFWVNLFS"
FT gene complement(1381. .2466)
FT /gene="Rep"
FT CDS complement(1381. .2466)
FT /codon_start=1
FT /gene="Rep"
FT /product="replication-associated protein"
FT /function="responsible for viral replication"
FT /protein_id="AFP99153.1"
FT /translation="MPRKGSFYVKAKNYFITYPDCSLTKEEALSQLQNLSTPVNKKFIK
FT ICRELHQNGNPHLHVLVQFEGKYQCTNNRFFDLVSPNRSTHFHPNIQGAKSSSDVKSYI
FT AKDGDTIEWGVFQIDGRSARGGQQSANDAAAEALNSGTKEEAMQIIKEKLPEKFLFQYH
FT NLSSNLDRIFAKVHEPWTPPYHLSSFTKVPAEMQQWADDYFGRGAAARPERPVSIIVEG
FT DSRTGKTMWARALGPHNYLSGHLDFNSRVYSNEVEYNVIDDVAPQYLKLKHWKELLGAQ
FT KDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKEFLDKAENSALKNWTIKNAKFITLT
FT APLYQEGTQASQEAGHQETQD"
FT gene complement(2052. .2309)
FT /gene="AC4"
FT CDS complement(2052. .2309)
FT /codon_start=1
FT /gene="AC4"
FT /product="aC4"
FT /function="potential gene silencing suppressor"
FT /protein_id="AFP99154.1"
FT /translation="MGTLISTCLFSSRVNTSAQITDSSTWCPQTGQHISIQTFRELNPV
FT PTSSPTSQRTGTPLNGECSRSTVEVLEAVNNQLMTQLLKR"
XX
SQ Sequence 2600 BP; 630 A; 579 C; 610 G; 781 T; 0 other;
jx162595 Length: 2600 26-AUG-2012 Type: N Check: 3545 ..
1 accggatggc cgcgcgattt ttccgccttt tactttccac gcgcgccccg
51 cttttctcac tcgcgctatc gtccaatcat attgcgcctg ccgcgcctaa
101 ttaatttaaa caacttgggc cctaagttgt tgtctgggcc tataaaggaa
151 aagcgggttt gggccacagt ctttaattca aaatgactaa gcgcgattca
201 tcttggcgct cgattgctgg aacctcaaag gttcgtcgca cgttgaattt
251 ctccccacgt ggaggtggtg gcccaaaaca gacacgggcc tcagaatggg
301 ttaataggcc tatgtacagg aagcccttga tctatcggac tttacggacg
351 cccgacgtgc ccagaggttg cgaaggcccg tgtaaggtac agtcctatga
401 acagcgtcat gatatctccc acgtcggcaa ggtgatgtgt atttctgatg
451 tcactcgtgg taatggcatt acccaccgtg tgggtaagcg tttttgtgtt
501 aagtctgtgt atattttagg taagatatgg atggatgaga acatcaagct
551 caagaaccac acgaacagtg ttatgttctg gttggtcagg gaccgtcgac
601 catatggcac tccaatggac tttggccaag tgttcaacat gtatgacaat
651 gagcccagta ctgccactgt gaaaaacgat ctcagggatc gttaccaggt
701 tatgcatagg ttctacggca aggtcacagg tggtcaatat gctagcaacg
751 agcaggcttt ggtcaggcgt ttctggaagg tcaacaacca tgtggtttac
801 aaccaccaag aggctggcaa gtacgagaat cacactgaga acgcgttgtt
851 attgtatatg gcatgtacac atgcttctaa ccccgtgtat gcgacattga
901 aaattcgaat ctatttttat gattcgataa caaattaata aaatttgaat
951 tttatttcat gatgttcaat tacataactt acatgcgcat tgtctgttgc
1001 gaactgcaca gctctaatta cattgttaat ggaaattacg cctaagttgt
1051 ctaagtacat attgactaac cgtctaaacc taactaaata agttgaccca
1101 gaagctgtca tcgatttcgt ccagacttgg aagttcaggt aggctttgtg
1151 gagacccaac actctcctca ggttgtggtt gaatcgtatc tggacgtggt
1201 acactctggt cctggtgtat agtagttcct ctactctgtc tatcttgaaa
1251 tacaggggat tttctatctc ccagatatag acgccattct ctgcctgacg
1301 tgcagtgatg agttcccctg tgcgtgaatc catgacctgt acagcctatg
1351 tggaggtata tggagcaccc gcaatctaaa tcaatcctgc gtctcctgat
1401 ggcccgcctc ttggcttgcc tgtgtgcctt cttgatacaa gggggctgtg
1451 agggtgatga atttagcatt cttgatagtc caattcttga gagctgagtt
1501 ttcagctttg tccaggaatt ctttatagct ggcaccctca ccaggattgc
1551 aaagcacgat tgatgggatc cctcctttaa tttgaactgg cttgccgtat
1601 ttgcaatttg actgccagtc cttctgggcc cccagaagtt ctttccagtg
1651 ctttagcttt agatattgcg gtgcgacgtc atcgatgacg ttatattcca
1701 cttcatttga atagactctg gaattgaagt ctaggtgtcc actgaggtaa
1751 ttatgtgggc ctaacgcacg agcccacatc gtcttccctg tccttgaatc
1801 accttctact atgatactca caggcctctc cggccgcgca gcggcacctc
1851 tgccgaaata gtcatcagcc cattgttgca tctcggccgg tacctttgtg
1901 aaagaggaga ggtgatatgg aggagtccat ggctcatgaa cctttgcgaa
1951 gattctatcc aaattacttg ataagttatg atattggaat agaaattttt
2001 ctggtaattt ctcttttatg atttgcatgg cctcctcctt tgttccagag
2051 ttcaacgctt cagcagctgc gtcattagct gattgttgac cgcctcgagc
2101 acttctaccg tcgatctgga acactcccca ttcaatggtg tccccgtcct
2151 ttgcgatgta ggacttgacg tcggaactgg atttagctcc ctgaatgttt
2201 ggatggaaat gtgttgacct gtttggggac accaagtcga agaatctgtt
2251 atttgtgcac tggtatttac cctcgaactg aacaagcacg tggagatgag
2301 ggttcccatt ttgatgaagt tctctgcaga ttttgatgaa cttcttgttc
2351 acgggtgtag aaagattttg taattgggaa agtgcttctt ctttggttaa
2401 agagcagtct ggataagtga tgaaatagtt tttggcttta acatagaaag
2451 aaccctttcg tggcattttt gtaataagat gtgtgtaccc ccaatagcta
2501 tctcgctcaa attcctatga attgggggta ctaggggtac atttatatta
2551 gaagttccat gggttagatc agacacgtgg cggccatccg atataatatt