Sequence of DPV Moroccan pepper virus
Moroccan pepper virus isolate MPV-EM81, complete genome.
ACC No: JX182425
Dated: 2013-01-01 | Length: 4772 | CRC: 493324502
ID JX182425; SV 1; linear; genomic RNA; STD; VRL; 4772 BP.
XX
AC JX182425;
XX
DT 01-JAN-2013 (Rel. 115, Created)
DT 01-JAN-2013 (Rel. 115, Last updated, Version 1)
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DE Moroccan pepper virus isolate MPV-EM81, complete genome.
XX
KW .
XX
OS Moroccan pepper virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Tombusvirus.
XX
RN [1]
RP 1-4772
RA Wintermantel W.M., Hladky L.L.;
RT "Complete genome sequence of Moroccan pepper virus";
RL Unpublished.
XX
RN [2]
RP 1-4772
RA Wintermantel W.M., Hladky L.L.;
RT ;
RL Submitted (14-JUN-2012) to the INSDC.
RL Virology, USDA-ARS, 1636 East Alisal Street, Salinas, CA 93905, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .4772
FT /organism="Moroccan pepper virus"
FT /isolate="MPV-EM81"
FT /mol_type="genomic RNA"
FT /country="Morocco:Rabat-Sale"
FT /isolation_source="eggplant"
FT /note="collected in either 1980 or 1981; virus stored in
FT laboratory freezer and reactivated for sequencing"
FT /db_xref="taxon:208086"
FT CDS join(167. .1054,1058. .2623)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="92 kDa protein"
FT /note="replication protein; P92"
FT /protein_id="AFM91108.1"
FT /translation="METIKRMIWPKKEIFVGDFAIGVNRTAPVDIFQLVCRVVLRYMRT
FT GKIECDSDSMTKFVVELLKTDCAAKWEWFMKRRQRGDYIVPLSIASIPIIPLLSYATRV
FT RAVSVKAFGNELTFSIRVPRPSVPKKGLLLRLAAGLALAPICALAMYATLPREKLSVFK
FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRMTKVTASTGRPRRRPYAAK
FT IAQVARAKVGYLKNTPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE
FT ESAALWGSSESLGVKGGLVRLPGVVTQTNRDIPSGVLLPQEVLEVRAGPPNAKDRNIFM
FT VAGCPSQARFLVHNHCLKNLKRGLVERVFCVEKNGILTRTPQPTKGAFSRLSPFRKAVC
FT EKVGVAHRLGYDGFLSYYNGAKLRTYKRAVESLHITPVSERDSHLTTFVKAEKISTAKG
FT DPAPRVIQPRNPRYNVELGRYLRHMESKLMKAVDGVFGETTCIKGYTADEVGAIFREKW
FT DRFDKPVAIGLDASRFDQHGSVEALQFEHSFYRALYPGNKLLSKLLDWQLHNKGKGYVP
FT DGTITYRKEGCRMSGDINTSLGNYLLMCAMIYGYMRHLGINEFSLANCGDDCVLIVERR
FT NLKQIQGTLPEYFLGLGYTMKVEKPVFQLEEVEFCQAHPVQFQGGWKMVRNVRTAMSKD
FT VHCVNNIRDLATRRAWSNAQHFGGRALTSGIPVVDKFYSRFVVYDAPKKHQRIDTVTNV
FT HKWRGSGGAYTVTPESRASFWAAFGLTGDEQLALEDRLDRWEMDLFGEEGVDAHEPSIL
FT DSAVA"
FT CDS 167. .1057
FT /codon_start=1
FT /product="33 kDa protein"
FT /note="replication protein; P33"
FT /protein_id="AFM91105.1"
FT /translation="METIKRMIWPKKEIFVGDFAIGVNRTAPVDIFQLVCRVVLRYMRT
FT GKIECDSDSMTKFVVELLKTDCAAKWEWFMKRRQRGDYIVPLSIASIPIIPLLSYATRV
FT RAVSVKAFGNELTFSIRVPRPSVPKKGLLLRLAAGLALAPICALAMYATLPREKLSVFK
FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRMTKVTASTGRPRRRPYAAK
FT IAQVARAKVGYLKNTPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE
FT ESAALWGSSESLGVK"
FT CDS 2645. .3820
FT /codon_start=1
FT /product="capsid protein"
FT /protein_id="AFM91109.1"
FT /translation="MAMVVRNNNTALVPYSGGKRGLRKAFGFGATIVGQKIYDNRGKIV
FT GFMVEQGKKGLSKMANALGYGNGQKTQNLVGGMGGAIMAPVAVSRQLRGSKPRFTGRTA
FT GSVTVTHREYVRQVNNTSAFTVNGGIVGNLYQLNPLNGTLFTWLPSIASNFDQYTFNNI
FT TLHYVPLCSTTEVGRVGLYHDKDSQDPEPTDRQELANFSTLKETPPWGEVMLRIPTDRI
FT KRYCDDSNAVDHKLIDLGQVGIATYGGAGANAVGDVFISYSITLFSPQPTSSLLSTRQQ
FT SLLGATGLTTGPSYLTVSSTATVLTLTFRATGTFMVSGHFRDTGAAVLGLAGNINVNSL
FT TVLDTVGLATSFSINCSVSALPSTITFTSTAITSSTVHCVRAVRANDATLL"
FT CDS 3854. .4423
FT /codon_start=1
FT /product="22 kDa protein"
FT /note="P22"
FT /protein_id="AFM91107.1"
FT /translation="MDTEYEQVNKPWNELYKETTLGNKLTVNVGMEDQEVALLPSNFLT
FT KVRVGLSGGYITMRRIRIKIIPLVSRKAGVSGKLYLRDISDTTGRKLHCTESLDLGQEI
FT RLTMQHLDFSVSTRSDVPIVFGFEELVSPFLEGRELFSISVRWQFGLSKNCYSLPQSKW
FT KVMYQEDALKALKPSKKKASKTDSSV"
FT CDS 3886. .4404
FT /codon_start=1
FT /product="19 kDa protein"
FT /note="P19"
FT /protein_id="AFM91106.1"
FT /translation="MERAIQGNDAREQANSERWNGGSGGSTSPFKLSDESPSWTEWRLH
FT NDETNSNQDNPLGFKESWGFGKVVFKRYLRYDGTEASLHRVLGSWTGDSVNYAASRFFG
FT INQIGCTYSIRFRGVSVTISGGSRTLQHLCEMAVRAKQELLQLTPVEVESNVSRRCPEG
FT FKAFEEESE"
FT CDS 4487. .4663
FT /codon_start=1
FT /product="putative 4 kDa protein"
FT /note="ORF6"
FT /protein_id="AFM91110.1"
FT /translation="MMTSQVGLYGGFGRPWDGDMERVSYAVRLTSVELAIWTYAWISHN
FT VTAQCKLDANLQL"
XX
SQ Sequence 4772 BP; 1247 A; 998 C; 1295 G; 1232 T; 0 other;
jx182425 Length: 4772 01-JAN-2013 Type: N Check: 3957 ..
1 agaaattccc caggatttct cgacctagtt cgtttatctg gtgacttgcg
51 cttctgttgc tttgcgtagg gaatttctct ccttaattac tatctttaat
101 tttggggttt gaaggttggg tctacctttc ggggggataa attgtaactt
151 ccaacaaata agcacaatgg agaccatcaa gagaatgatt tggcctaaga
201 aggagatctt tgtaggagat tttgcgatcg gagttaatag gacggcaccg
251 gtggacatct tccagttggt gtgtcgtgtg gttctaagat acatgaggac
301 agggaaaata gagtgtgatt ctgacagcat gacaaagttt gtggttgagt
351 tacttaagac agactgtgct gccaaatggg agtggtttat gaagagacgg
401 cagaggggtg actatatcgt ccctctatct atagcctcca tcccaatcat
451 accgctgttg agttacgcca cgagggtacg cgctgtctca gtcaaggctt
501 ttggtaatga acttacgttc agtattcgag tgcctagacc atctgtacct
551 aagaaaggtt tactcctcag actggcggca ggactagcac tcgcacctat
601 atgcgcgcta gccatgtacg ctaccctacc tagggaaaaa ctgtcggtat
651 tcaagcttag aactgaggca cgggctcaca tggaggatga gagagaagcg
701 acagattgtt tggtggttga accggctcgt gaacttaagg ggaaggatgg
751 agaagatctc ctcactggta gtagaatgac aaaggtaact gcgtccacgg
801 gacgccctcg ccgcagaccg tacgctgcga agattgcgca agtggcgaga
851 gcaaaggtgg gttaccttaa aaacacgcct gagaacaggt tgatctatca
901 gagagttatg attgagatca tggacaaaga ctgcgtccgg tatgttgaca
951 gggatgtcat attacctctg gctataggat gttgctttgt gtatccggat
1001 ggagtagagg agtcggcggc actatggggt tcttcggaat cccttggtgt
1051 gaaataggga ggcctagtac gtctacctgg ggttgtaaca cagaccaata
1101 gagatatccc atctggtgtg ttgcttcccc aggaggtgct agaggttcgt
1151 gcaggacctc ctaatgctaa ggaccgtaat atatttatgg ttgctggttg
1201 cccatcacag gcacggttct tagtacataa tcactgcctg aaaaacctaa
1251 aaaggggtct tgtggagaga gttttctgtg tcgagaagaa cggaattctc
1301 actcgcactc cacaacctac caaaggagcc tttagtcgtc tttccccgtt
1351 caggaaagca gtctgtgaga aggttggagt agcccaccga cttgggtatg
1401 acgggtttct gtcatactac aacggtgcga aactccgtac ttacaaacgg
1451 gctgtggaga gtctgcatat cacacctgtc tcggagaggg atagtcatct
1501 gactaccttc gtcaaggcgg agaagatatc gacagctaaa ggtgacccag
1551 cacctagggt gatacagcct cgtaatccta ggtataatgt cgagcttgga
1601 agatatctac ggcatatgga atccaaactg atgaaagctg tggatggcgt
1651 atttggagaa acgacatgca tcaagggata tactgccgat gaggttggcg
1701 ctatttttcg ggagaagtgg gacaggtttg acaagcctgt agccataggt
1751 ctcgacgcgt caaggtttga tcaacacggt tccgtggagg ctttgcaatt
1801 cgagcatagt ttctacaggg ccctgtaccc tggtaacaag cttttgagca
1851 agttattgga ctggcaactc cataataaag gtaagggtta tgttcctgat
1901 gggactatta cctatcgcaa ggagggctgc cgcatgagtg gggatataaa
1951 cacctcgttg ggcaattatc tactaatgtg tgctatgatc tatggataca
2001 tgcgccattt ggggatcaat gagtttagtc tggcgaactg tggggatgat
2051 tgtgttctaa ttgtagagcg caggaatctt aaacagatac agggcacact
2101 acctgagtat ttcctaggac taggatacac aatgaaggtg gaaaaacccg
2151 tgtttcaatt ggaagaggtt gaattttgcc aggcacaccc cgtgcagttt
2201 caaggtggtt ggaagatggt cagaaatgtc cgcactgcaa tgagtaaaga
2251 tgtgcactgt gtcaataaca tacgggatct cgctacgcgt agagcctgga
2301 gtaacgcaca gcatttcgga ggaagggcgt tgacgtccgg tatcccggtt
2351 gttgacaagt tctactctcg gtttgttgta tatgatgccc ccaagaagca
2401 tcaacgtatt gacacagtaa ccaatgtgca taagtggcgg ggatccggtg
2451 gggcgtatac tgtgactcct gaatctaggg ctagtttctg ggctgccttt
2501 ggactcacgg gggatgaaca gttagcgctt gaggaccgtt tggacagatg
2551 ggagatggat ctatttggag aggagggtgt tgacgctcat gagcccagca
2601 tccttgactc cgccgtagca tgaccaagca agataagtta cacaatggca
2651 atggtagtaa gaaacaacaa cacagcatta gtaccgtata gtggaggcaa
2701 gcgtggcctc cggaaagcat ttggatttgg agctacaatc gtcgggcaaa
2751 agatttatga taatcgcggt aagattgtag ggttcatggt agaacaagga
2801 aagaaaggtc taagtaagat ggctaatgct ctcggttatg gcaatggtca
2851 gaaaactcag aatctggttg gtgggatggg tggggccatt atggctcctg
2901 ttgcggtctc gaggcagctt cgtgggagta aaccccggtt tactggacgc
2951 acagctggtt ctgttactgt cacccaccgt gagtatgtac gacaggtaaa
3001 caacacgtct gccttcacag tcaatggggg tattgtcggg aatttgtatc
3051 aactgaatcc tttgaacggt actctgttca cttggttgcc ctccatagca
3101 tccaattttg atcaatacac gttcaataac atcacgttgc actatgtccc
3151 cctctgtagt actactgagg taggtcgtgt tggattatat catgacaaag
3201 actcacagga tcctgagcct actgataggc aggagttggc gaactttagt
3251 acccttaaag agacaccccc ctggggtgaa gtaatgttgc gaatacccac
3301 tgataggatc aagaggtact gcgatgacag taacgcagtc gatcataagc
3351 taattgattt gggtcaagta ggcattgcta catatggggg tgctggcgcc
3401 aacgccgtgg gtgatgtgtt tatatcgtat agcattactt tattctcacc
3451 tcagcccact agctcattgc ttagcacaag acaacagagc cttctcggtg
3501 ccaccggtct cacgactggc ccgagttact tgacggtgtc cagcacggcg
3551 accgttctca ccttgacgtt tagagctact ggcaccttta tggtctccgg
3601 tcacttccgt gatactgggg cagccgtatt aggtctcgct ggtaatatca
3651 atgtaaattc actgacagtc ttggatacgg ttggtttggc cacctcgttt
3701 tccattaatt gttcagtgtc cgctttaccg tctaccatta cctttacctc
3751 cacagcaata acatcttcca cggtacactg tgtacgggcc gtaagggcca
3801 atgatgccac attgttgtaa ctatgtgagg ggcttcttga acaagaccag
3851 ttcatggata ctgaatacga acaagtcaat aaaccatgga acgagctata
3901 caaggaaacg acgctaggga acaagctaac agtgaacgtt ggaatggagg
3951 atcaggaggt agcacttctc ccttcaaact ttctgacgaa agtccgagtt
4001 ggactgagtg gaggctacat aacgatgaga cgaattcgaa tcaagataat
4051 ccccttggtt tcaaggaaag ctggggtttc gggaaagttg tatttaagag
4101 atatctcaga tacgacggga cggaagcttc attgcacaga gtccttggat
4151 cttggacagg agattcggtt aactatgcag catctcgatt tttcggtatc
4201 aaccagatcg gatgtaccta tagtattcgg tttcgaggag ttagtgtcac
4251 catttctgga gggtcgagaa ctcttcagca tctctgtgag atggcagttc
4301 gggctaagca agaattgcta cagcttaccc cagtcgaagt ggaaagtaat
4351 gtatcaagaa gatgccctga aggctttaaa gccttcgaag aagaaagcga
4401 gtaagacaga ctcttcagtc tgagtgagtg gaagcaagca ctaacctaga
4451 tagcatgtgg gttacttgca ctggcatgca gccgttatga tgacgagtca
4501 ggtcgggctc tacggtgggt ttggtcgccc atgggacgga gatatggaaa
4551 gggtctcgta cgctgttaga ctaacttcgg ttgagcttgc gatatggacc
4601 tatgcctgga taagtcataa tgttactgcc cagtgtaaat tggatgccaa
4651 cttacaactt taggagtact tgtggaacct cacgatgaca cggttgatct
4701 cacccttcgg gggggctata gagatcgctg gaagcactac cggacaaccg
4751 gaacattgca gaaatgcagc cc