Sequence of DPV Rice tungro bacilliform virus
Rice tungro bacilliform virus isolate Punjab, complete genome.
ACC No: JX255736
Dated: 2013-04-26 | Length: 7931 | CRC: -48291252
ID JX255736; SV 1; circular; genomic DNA; STD; VRL; 7931 BP.
XX
AC JX255736;
XX
DT 03-SEP-2012 (Rel. 114, Created)
DT 26-APR-2013 (Rel. 116, Last updated, Version 2)
XX
DE Rice tungro bacilliform virus isolate Punjab, complete genome.
XX
KW .
XX
OS Rice tungro bacilliform virus
OC Viruses; Retro-transcribing viruses; Caulimoviridae; Tungrovirus.
XX
RN [1]
RP 1-7931
RX PUBMED; 23197138.
RA Mathur S., Dasgupta I.;
RT "Further support of genetic conservation in Indian isolates of Rice tungro
RT bacilliform virus by sequence analysis of an isolate from North-Western
RT India";
RL Virus Genes 46(2):387-391(2013).
XX
RN [2]
RP 1-7931
RA Mathur S., Dasgupta I.;
RT ;
RL Submitted (27-JUN-2012) to the INSDC.
RL Plant Molecular Biology, University of Delhi South Campus, Benito Juarez
RL Road, New Delhi, Delhi 110021, India
XX
FH Key Location/Qualifiers
FH
FT source 1. .7931
FT /organism="Rice tungro bacilliform virus"
FT /isolate="Punjab"
FT /mol_type="genomic DNA"
FT /country="India"
FT /collection_date="1998"
FT /db_xref="taxon:10654"
FT CDS <98. .670
FT /codon_start=1
FT /product="P24"
FT /note="ORFI"
FT /db_xref="InterPro:IPR005037"
FT /db_xref="UniProtKB/TrEMBL:J7JWQ3"
FT /protein_id="AFQ62090.1"
FT /translation="IESRLEKLGFLDLAIWGSPKTQKYSLSTENIAFYCYFHKSENTST
FT TGHNHTFHSDNKQLNTIVDLIVKHAEKTKNIKEELDNYSKLLEKILELKPTKKQIEKLL
FT ENQNTINQNFDYIKEQNSQIEKSLRKTNKLEDSINTLLVEIQQARPKEVELRTLKIAEQ
FT NSKAIEKFEKEIQDLREILEYLKHQST"
FT CDS 667. .1002
FT /codon_start=1
FT /product="P12"
FT /note="ORFII"
FT /db_xref="InterPro:IPR009417"
FT /db_xref="UniProtKB/TrEMBL:J7K3B5"
FT /protein_id="AFQ62091.1"
FT /translation="MSADYPTFKEALEKFKDLESETANKDKFGWVFTLQGIKTTADVNL
FT ASKGLVQLYALQEIDKKINHLSAQVGKIPTTSGSSSSAGAIVPAGSNTQGQYKAPPKKG
FT IKRKYPG"
FT CDS 999. .6023
FT /codon_start=1
FT /product="P194"
FT /note="ORFIII"
FT /db_xref="GOA:J7JVS2"
FT /db_xref="InterPro:IPR000477"
FT /db_xref="InterPro:IPR001878"
FT /db_xref="InterPro:IPR001969"
FT /db_xref="UniProtKB/TrEMBL:J7JVS2"
FT /protein_id="AFQ62092.1"
FT /translation="MSLRPFSGTSRTLTQDSASESNIKKGKSSTKRELIEEIDVAKEIE
FT NFDWNKLSGIKSNKLYEKNWQEKAKLKQQSIISAYKEEAISVTTNAFITSLFPNEVIKN
FT VKNQGKLYYHIGMMAIGIKGLHRKKIGTKVMVMFYDDSFGKAKEASIGSIEMDMNAGCG
FT VFYSCPDFAKYIKDLSHLKIGIQTLGYENYEGKNLSIAIKTIGRLTTNIQARYKMNVKN
FT IVEQISSQGITMVAPMEIDSSHLDGNEWNLSKFMIQEGTSRVPSKALIYQNLHGGESLR
FT FSNYTQTKMHDPTEINSDEDEDLKILGEQLNAKMATLQEETLEQKLERIKEEKKQLLVK
FT LEAKKKEIELKSLKMAVIEDDFNPNNEYLDDSYSELEDLEFEQLGLTGWEDLDQESLET
FT EEVTEWENPNQVLTREIKAFKSVSEQIEDIFGELLKEHGNYDMALKNLEERYDLRNLEG
FT AKNLEEIAKASTSKMMDVKPVKRPKEEQTAYEDDMRDDWRRKELTANPEVSSKDRNFER
FT IGGSYKKNFYPSKSEILNLDHVPPQFYYDQIITWEGIVKNEWEARKKDGMDMWSWMDGR
FT ITGMVLYLIQDWISKNQAAYNDIKSRGDRPENFVKMVKDRFLIEDPTDERRTALQRLAL
FT RELEALNCEDPVKIQPFMAEYLKKAAEAKKGFDVIYVERLFDRLPEAVGKLIKKEFLDA
FT GNSYEAGIGVAVSYISTWMRLKCIKETEAKTQKKASLAFCRSIYTIGDYKKRKTLKRVT
FT NYNRNKRKNYVRKPNIKRKCRCYICQDENHLANRCPRRYVNQARASMIEGLEEDIVSIA
FT SDDEDYENFFEIIELEEFLSKSGQQDHEHTWETGGKKEKTCDICDYYTDFNKTIVCKTC
FT EIQYCTTCANQLGIEVEKTYKKSREEELYDELRKTVVNLDLRLTIVEHKLEMNKLQEQF
FT DSLQLSKEPSSSETIKALAMQAKESNFIKTNINRTAGCYVEVKLTFLNNSKITTALIDS
FT GSTHNIICPLLVPEIWVKSLNLDIVMTTIDNSKYSLNRGLHDDVKIQFKEVDESFGIKY
FT SLGQTYVAPKPTGTFIIGHRFMTSEHGSITIHKDYVTIQKTTGIYPTARHELKSEFARK
FT HGGQRPLFSNIPETYNKIPKLYGYKSEIEDKNLLTLIKELEYLGYIGDDITKNKTNWVC
FT DFKIINPDINITCNTIPYTPADKEVFEKQIKELLDNKLIRKASPTCRHRTAAFVVRNHS
FT EEVAQKPRIVYNYKRLNDNMVTDPFNIPHKISMINLLQRARIFSKFDLKAGFHHMKLKE
FT DFKDWTTFTCSEGLYTWNVCPFGIANAPCAFQRFMQESFGDLKFALLYIDDILIASSNE
FT QEHIKHLKLFFTRVKEVGCVLSKKKSKMFLKEVEYLGVEIKEGKISLQPHIVEKIKKFD
FT KSKLSTLKGLQAYLGLLNYARGYIKDLSKLVGPLYKKTGKSGQRTFNKEDWNIIFKIER
FT EVDKIKPLSRPEESDYIIIETDASEEGWGAVLICKPDKYASKDTEKIAGYASGNFGEKK
FT TWTSLDYEIEAINEALNKFQIYLDRDFTIRTDCEAIVKGIKTEDYKKRSKTRWIKLRDN
FT LLKDGYKPTFEHIKGNKNFLPNFLSREGDFILKCLQNTASIIESSDSRSSTIESSDSQS
FT SIKESLDSRTPTKESSDSSCRIKLHPLSSRQKVKGE"
FT CDS <6047. .7213
FT /codon_start=1
FT /product="P46"
FT /note="ORFIV"
FT /db_xref="InterPro:IPR009347"
FT /db_xref="UniProtKB/TrEMBL:J7K2M2"
FT /protein_id="AFQ62093.1"
FT /translation="INKECSYSIHHLGKNRVPIYKQGNLFHSEFTGRLSHLSNGLIDHL
FT FTFSDNTERVRKLHLISEHIYNKEFEIQTYSLECEKLREQVSHLKNTIETQKQQIREMR
FT DKIEGLREPLKKPIYTTQDKEALRNFFCKERSMEYIYHHIKRLARESYYSHLNKLQKDM
FT EFLRGFYLSFLTNVKFLVLFETGLWTTENIESHFFNNSSLFITQEEGERQMTKGLLEKN
FT SEDEAGRYILTSGFVSDLYAHGFIKQINFTNKLPEGIPLVIREKIMQYKFPGANTILIE
FT KEIPKWDFDLMKRSTTFRTQIYILQGHRNFYGFSPIKSYEPITPEEFGIEYYSWEQIYE
FT DDEADVVYQSISTRISKVVREYAWPCDDSDIMSCTTSMEEEYAHRLEA"
XX
SQ Sequence 7931 BP; 3220 A; 1269 C; 1430 G; 2012 T; 0 other;
jx255736 Length: 7931 26-APR-2013 Type: N Check: 4421 ..
1 tggtatcaga gcaatgttcg aactttaagg gaaattttga tacaaactta
51 tacatacatt tacatatgtt ctgaagagga atcttatttt ctcaaatatt
101 gagtcacgtc ttgaaaaact tggatttcta gatttagcaa tttggggatc
151 accaaaaaca caaaaatata gtctatctac tgaaaatata gctttttatt
201 gttactttca taagtctgaa aacacatcca ctactggaca taatcacacc
251 tttcattctg ataataagca acttaatact attgtagatc taatagtaaa
301 acacgcagaa aaaactaaaa atattaagga agaactagat aactatagta
351 agttactaga aaagatatta gaactaaaac ccactaagaa gcaaatagaa
401 aaacttttgg aaaaccaaaa cactataaac cagaactttg attatatcaa
451 agagcaaaac tctcagattg aaaaatcttt gagaaaaact aataaattag
501 aagattctat aaataccttg cttgtggaaa tacagcaagc tagacctaaa
551 gaagtagaac ttcgtaccct taaaatagca gaacaaaact ctaaagctat
601 agaaaaattt gaaaaagaaa tacaagatct aagagaaatc ttagaatatc
651 ttaagcacca atctacatga gtgctgatta tcctaccttt aaggaagcct
701 tagaaaagtt taaggattta gagtctgaaa cagcaaacaa agataaattt
751 ggctgggttt ttactcttca agggataaag acaacagcag acgtaaatct
801 agcatctaaa ggactagtac aactttacgc tttacaagaa atcgataaga
851 aaataaatca tttatctgca caagtcggca agatacctac aactagtggt
901 agcagtagtt cagcaggagc catagtacct gcaggaagta atacccaagg
951 tcagtataaa gcaccaccta agaaaggaat taaaaggaag tacccaggat
1001 gagtcttaga ccgtttagcg gtacctctag aactctaact caagattcag
1051 ctagtgaatc taacattaaa aaaggaaaat cttcaacaaa aagagaatta
1101 atagaagaaa tagatgttgc taaagaaata gaaaactttg attggaataa
1151 actatctggt ataaaatcta ataaacttta tgagaaaaat tggcaagaaa
1201 aagccaaatt aaaacaacaa tcaataatct ctgcttataa agaagaagct
1251 attagtgtca caactaatgc tttcatcact tcattatttc ctaatgaagt
1301 tataaaaaat gttaagaatc aaggaaaact ttattatcat ataggcatga
1351 tggccatagg aattaaagga ttacatagaa agaaaatagg tactaaagta
1401 atggtaatgt tttatgatga tagctttgga aaagccaaag aagctagtat
1451 aggatcaata gaaatggata tgaatgcagg ttgtggagta ttttactctt
1501 gccctgattt tgccaaatat ataaaagacc tatcccacct taagatagga
1551 attcagacct taggatatga aaattatgaa ggaaaaaatc tttccatagc
1601 cataaaaact ataggaagac taacaacaaa catccaggct agatataaaa
1651 tgaatgttaa aaatatagta gaacaaatat catcccaagg aataactatg
1701 gtagcaccca tggaaataga ttcatcacac ttagatggga atgaatggaa
1751 tttaagtaaa tttatgattc aggaaggaac aagtagagtt cctagcaaag
1801 ccttaatata tcagaatctg catggaggag aatcacttag attttcaaac
1851 tacacacaaa ccaaaatgca tgatccaaca gaaataaatt ctgatgaaga
1901 tgaagattta aaaattctag gagaacaatt aaatgccaaa atggcaaccc
1951 ttcaagaaga aaccctagaa caaaaattag aacgcataaa agaagaaaag
2001 aaacaactac tagtaaaact agaagccaaa aagaaggaaa tagaattaaa
2051 atccttaaaa atggcggtca tagaagatga ctttaaccca aacaacgaat
2101 atctagatga ctcatattct gaattagaag atttagaatt cgaacaatta
2151 ggattaactg gttgggaaga tctagaccaa gaaagtctag aaacagaaga
2201 agtcactgaa tgggaaaacc caaaccaagt cctaactaga gaaataaaag
2251 cctttaaatc agtatctgaa caaatagaag atatatttgg agaattatta
2301 aaagaacatg gaaattatga catggcccta aaaaatcttg aagaaagata
2351 tgatttaaga aacttagaag gagccaaaaa cctagaagaa atagctaaag
2401 catccacatc aaaaatgatg gatgtaaaac cagtaaaaag accaaaagaa
2451 gaacaaacag catatgagga tgatatgaga gatgattgga ggagaaaaga
2501 attaacagcc aatccagaag tatcctcaaa agatagaaat tttgaaagaa
2551 taggaggatc atataagaaa aacttttacc ccagtaaaag tgaaatccta
2601 aacctagacc atgtaccccc acaattctac tatgaccaaa tcataacttg
2651 ggaaggaata gtaaaaaacg aatgggaagc aaggaaaaag gatggtatgg
2701 acatgtggtc ctggatggat ggaagaataa caggaatggt tttatatcta
2751 atacaagatt ggatatctaa aaaccaagcc gcttataatg atataaagtc
2801 tcgaggagat agaccagaaa atttcgtaaa aatggttaaa gatagattct
2851 taatagaaga tcctacagac gagcgaagaa cagccttaca aagactagct
2901 ctaagagaat tagaagcttt aaattgtgag gatccagtta aaattcagcc
2951 atttatggca gaatatctta agaaagctgc cgaagctaaa aaaggatttg
3001 atgtcatata tgtcgaaaga ctatttgata gacttcctga ggcagtagga
3051 aaactaataa aaaaggaatt tctagatgca ggaaattcat atgaagcagg
3101 tataggagta gctgtttcat acatatctac atggatgaga ttaaaatgca
3151 taaaagaaac agaagctaaa acacaaaaga aagcatcatt agcattctgt
3201 cgatccatat atactatagg agattataag aaaagaaaaa cattaaaacg
3251 tgttacaaat tataatcgaa ataaaagaaa aaattatgtt agaaaaccta
3301 atataaaaag aaagtgtagg tgttatattt gccaggatga aaaccaccta
3351 gcaaacagat gtcctagaag atatgtcaat caagctagag ccagcatgat
3401 tgagggatta gaagaagata tagtttccat agcttcagat gatgaagact
3451 atgagaactt ctttgaaata atagaactag aagagttttt gagtaaatca
3501 ggacaacaag atcacgagca cacctgggaa acaggaggta agaaagaaaa
3551 aacttgtgat atttgtgatt attatactga tttcaataaa accatagtat
3601 gcaaaacatg tgaaatacaa tattgtacta cttgtgctaa tcaacttggt
3651 atagaagtag aaaaaacata taagaaatct agagaagaag aattatatga
3701 tgaattaaga aaaacagttg tcaacctaga tctaagattg acaatagttg
3751 aacataaact agaaatgaat aaattacaag aacaatttga ttccttgcaa
3801 ttatctaaag aacctagttc ttcagaaact ataaaagctt tagctatgca
3851 agcaaaagaa tcaaatttta taaaaacaaa tataaataga acagcaggat
3901 gttatgtaga ggttaaatta actttcttaa ataactcaaa aataaccact
3951 gcattaatag attcaggatc aacacataat attatctgtc ccttattggt
4001 accagaaata tgggtcaaaa gcctgaattt agatattgtt atgacaacaa
4051 tagataacag caaatatagc ttaaatcgag gattacatga tgacgtaaaa
4101 atacaattta aagaagtaga tgaaagtttt ggaataaaat acagtttggg
4151 acaaacatat gttgccccta aaccaactgg aactttcata attggacata
4201 gatttatgac cagtgaacat ggtagtatta caattcataa agattacgtt
4251 acaatccaaa aaactacggg aatctacccc acagctcgtc atgaactcaa
4301 atcagagttt gcgcgaaagc atggtggaca aagaccccta ttttcaaaca
4351 ttccagaaac ctacaacaaa attccaaaat tatatgggta taagagtgaa
4401 atagaagata aaaacctact tactcttata aaagagttag aatatttggg
4451 atatataggc gatgatataa caaaaaataa aaccaattgg gtatgtgact
4501 tcaaaatcat taacccagat ataaacatca cttgtaacac aatcccatat
4551 accccagcag acaaagaagt ctttgaaaaa caaatcaaag aactcttgga
4601 taataagtta ataaggaaag caagtcctac ttgcagacat agaactgcag
4651 cttttgtagt aagaaaccat tctgaggaag tagcacagaa gcctcgaata
4701 gtttataact ataaaagact gaatgataat atggttacag atcctttcaa
4751 tattccacat aaaatctcta tgataaattt attacagaga gctagaatat
4801 tctctaagtt cgacttgaaa gcagggtttc atcatatgaa acttaaagaa
4851 gattttaaag attggacaac ctttacttgt tctgaaggat tatatacttg
4901 gaatgtctgt ccatttggta tagctaacgc tccatgcgca tttcaaagat
4951 ttatgcagga atcctttgga gatttaaagt ttgcattatt atacatagat
5001 gacatcttaa ttgcatcaag taatgaacaa gagcatatta agcatcttaa
5051 gttattcttc actagagtta aagaagtagg ttgtgtcctt agtaagaaaa
5101 aatcaaaaat gttcctgaaa gaagtagaat acttaggagt ggagataaaa
5151 gaaggaaaga ttagcttaca accacacata gtggaaaaga taaagaagtt
5201 tgataaaagc aagttgagta ccctaaaggg attacaggca tatctaggcc
5251 tactcaatta tgctagagga tacattaaag acctatcaaa gttggtagga
5301 ccactatata aaaagactgg caagagtggc cagcgaacct ttaataaaga
5351 agattggaat ataattttta agatagaaag agaagttgat aagattaaac
5401 ctttaagtag accagaagaa tctgactaca taataataga gacagatgca
5451 tcagaagaag gatggggagc agtcttaatc tgcaaacctg ataaatatgc
5501 tagcaaagat actgaaaaga tagcaggtta tgcatcagga aactttggag
5551 aaaagaagac ctggactagt ttagattatg agatcgaagc tataaacgaa
5601 gcattaaata agtttcagat atatttagat agagacttta caatcagaac
5651 agattgtgag gcaatagtta aaggcataaa aacagaagat tacaaaaaga
5701 gatccaagac aagatggatt aaactaagag ataatcttct taaagatgga
5751 tacaagccta cctttgagca tatcaaagga aacaaaaact ttttgccaaa
5801 cttcctatcc cgcgagggag attttatttt aaaatgtctt caaaacacgg
5851 cttcaattat agaatcttcg gattcacgat cttcaactat agaatcttcg
5901 gattcacagt cttcaattaa agaatctttg gattcacgga ctccaactaa
5951 agaatcttcg gattcatctt gcaggataaa acttcatcct ctgtcctcaa
6001 ggcagaaggt gaaaggcgag taatcgctaa agttcttggc gtttccatca
6051 ataaagagtg ttcatactca atccaccatc tcggcaaaaa ccgagtcccc
6101 atatataaac agggaaacct gttccacagt gagtttactg gtaggcttag
6151 ccacttatca aacggtctta tagaccacct ttttacattt tctgataata
6201 ctgagcgagt taggaagctc caccttatat cagagcatat ctacaataaa
6251 gaatttgaaa tacagaccta tagtctcgag tgtgagaaac taagagagca
6301 ggttagccac ttaaaaaata ctattgaaac acaaaaacaa cagataagag
6351 agatgagaga taaaattgag ggactgagag agccactcaa aaagcccata
6401 tacacaaccc aggataagga agcacttcgt aacttctttt gcaaagaaag
6451 aagcatggag tacatttatc accacataaa gaggttagct cgagagagct
6501 attactcaca tctaaataaa cttcagaaag atatggaatt ccttagggga
6551 ttttacttat ctttcttaac aaatgtcaag tttctagttc tctttgagac
6601 tggactctgg acaactgaaa atattgaaag ccacttcttc aacaacagca
6651 gtctcttcat aacccaggaa gaaggagaaa ggcagatgac aaaaggattg
6701 ctagaaaaga acagtgaaga tgaagctgga agatacatcc tgacatcagg
6751 atttgtgtct gacctatacg ctcatggatt cataaaacag ataaacttca
6801 ctaataaact cccagaaggt attcctttag tcataagaga aaagataatg
6851 cagtataaat tcccaggagc aaatactatc ttaattgaga aagaaatccc
6901 aaaatgggac tttgatctca tgaagagaag cacaacattc aggactcaga
6951 tttacattct ccaaggacat agaaactttt atggattttc acccataaaa
7001 tcctatgaac ccattacacc cgaagagttc ggaatagaat attacagctg
7051 ggaacagatc tatgaagatg atgaagcaga cgtcgtctat caatcaataa
7101 gcaccagaat ctctaaagtt gtaagggagt atgcttggcc atgtgatgac
7151 agcgacatca tgtcctgcac tacctcaatg gaagaagaat atgcccacag
7201 gctggaggca taaagagatg ctccaaagat aaaagaacag agcatcaaag
7251 catcaataaa agaagactga agacataaag gaggaatcca ctttaaatta
7301 ttgtacctct acaattattg tacgaaatgt ctagactacc cctgaaccct
7351 cctatataag gagaagtagt ctgcatgtaa taggcatcga atccgaaata
7401 cacacaccca gagtagcaca cacttccacg agagcaagag aagagctgat
7451 cttctcactt cctctccaaa gaaggattag ctgcaatggc tcaggtcagt
7501 gagtagtcgt ctttaaggtt cctctaggaa cctctgtgta atatgtattg
7551 tattatgttt gtatcatcaa gaacttatcc gccgcatgaa taaagctcta
7601 tattgttgtt tacactcctt cgataagata tgaagccata ctcgtttctt
7651 aatcaatagt tctaagttaa ttctagcatg aaaaaggggg ctaaaggggg
7701 aagaagtacc gtcagggcgt gtgatgccaa gggaacaagt accatgaata
7751 ccctaataag tgctagaagg aagataagaa ctaacgaaac aaggaacatt
7801 tggtagctgg tttctgatta tcattatcaa gtagctcttc ctcatcacga
7851 aaactgcaaa ggcctgccaa ccctaggctg aaacagtgac taggccgagg
7901 aattgcgaaa agataggggg gtgcccgcat c