Sequence of DPV Hop stunt viroid

Hop stunt viroid isolate 13-1.27-HSVd, complete sequence.

ACC No: JX259410

Dated: 2012-09-16 | Length: 299 | CRC: 18555945

                
ID   JX259410; SV 1; circular; genomic RNA; STD; VRL; 299 BP.
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AC   JX259410;
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DT   16-SEP-2012 (Rel. 114, Created)
DT   16-SEP-2012 (Rel. 114, Last updated, Version 1)
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DE   Hop stunt viroid isolate 13-1.27-HSVd, complete sequence.
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KW   .
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OS   Hop stunt viroid
OC   Viroids; Pospiviroidae; Hostuviroid.
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RN   [1]
RP   1-299
RA   Wang J., Boubourakas I.N., Voloudakis A.E., Agorastou T., Magripis G.,
RA   Rucker T., Kyriakopoulou P.E., Vidalakis G.;
RT   "The Enemy Behind the Gates. Citrus Viroids Threaten the Future of the
RT   Greek Citriculture";
RL   Unpublished.
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RN   [2]
RP   1-299
RA   Wang J., Boubourakas I.N., Voloudakis A.E., Agorastou T., Magripis G.,
RA   Rucker T., Kyriakopoulou P.E., Vidalakis G.;
RT   ;
RL   Submitted (25-JUN-2012) to the INSDC.
RL   Plant Pathology and Microbiology, University of California, Riverside, 900
RL   University Ave., Riverside, CA 92521, USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .299
FT                   /organism="Hop stunt viroid"
FT                   /host="Citrus sinensis (Lane Late navel orange)"
FT                   /isolate="13-1.27-HSVd"
FT                   /mol_type="genomic RNA"
FT                   /country="Greece:Poros Arboricultural Station"
FT                   /PCR_primers="fwd_name: HSVd-For78-102, fwd_seq:
FT                   cgcccggggcaactcttctcagaatcc, rev_name: HSVd-Rev85-60,
FT                   rev_seq: gccccggggctcctttctcaggtaag"
FT                   /PCR_primers="fwd_name: HSVd-For283-302, fwd_seq:
FT                   ccggatcctctcttgagcccct, rev_name: HSVd-Rev288-271, rev_seq:
FT                   ctggatccgcggcagaggct"
FT                   /note="CV-IIa"
FT                   /db_xref="taxon:12893"
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SQ   Sequence 299 BP; 60 A; 85 C; 83 G; 71 T; 0 other;

jx259410 Length: 299  16-SEP-2012  Type: N  Check: 5048  ..

       1  ctggggaatt ctcgagttgc tgcatgggca agcaaagaaa aaacaaggca
      51  gggaggagac ttacctgaga aaggagcccc ggggcaactc ttctcagaat
     101  ccagcgagag gcgtggagag agggccgcgg tgctctggag tagaggcttc
     151  tgcttcgaaa caccatcgat cgtcccttct tctttacctt ctcctggctc
     201  ttcgagtgag acgcgaccgg tggcatcacc tctcggttcg tcttccaacc
     251  tgctttttgt ctatctgagc ctctgccgcg gatcctctct tgagcccct