Sequence of DPV Hop stunt viroid

Hop stunt viroid isolate 19-2.24-HSVd, complete sequence.

ACC No: JX259417

Dated: 2012-09-16 | Length: 301 | CRC: -2087219803

                
ID   JX259417; SV 1; circular; genomic RNA; STD; VRL; 301 BP.
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AC   JX259417;
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DT   16-SEP-2012 (Rel. 114, Created)
DT   16-SEP-2012 (Rel. 114, Last updated, Version 1)
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DE   Hop stunt viroid isolate 19-2.24-HSVd, complete sequence.
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KW   .
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OS   Hop stunt viroid
OC   Viroids; Pospiviroidae; Hostuviroid.
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RN   [1]
RP   1-301
RA   Wang J., Boubourakas I.N., Voloudakis A.E., Agorastou T., Magripis G.,
RA   Rucker T., Kyriakopoulou P.E., Vidalakis G.;
RT   "The Enemy Behind the Gates. Citrus Viroids Threaten the Future of the
RT   Greek Citriculture";
RL   Unpublished.
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RN   [2]
RP   1-301
RA   Wang J., Boubourakas I.N., Voloudakis A.E., Agorastou T., Magripis G.,
RA   Rucker T., Kyriakopoulou P.E., Vidalakis G.;
RT   ;
RL   Submitted (25-JUN-2012) to the INSDC.
RL   Plant Pathology and Microbiology, University of California, Riverside, 900
RL   University Ave., Riverside, CA 92521, USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .301
FT                   /organism="Hop stunt viroid"
FT                   /host="Citrus paradisi (Star Ruby grapefruit)"
FT                   /isolate="19-2.24-HSVd"
FT                   /mol_type="genomic RNA"
FT                   /country="Greece:Poros Arboricultural Station"
FT                   /PCR_primers="fwd_name: HSVd-For78-102, fwd_seq:
FT                   cgcccggggcaactcttctcagaatcc, rev_name: HSVd-Rev85-60,
FT                   rev_seq: gccccggggctcctttctcaggtaag"
FT                   /PCR_primers="fwd_name: HSVd-For283-302, fwd_seq:
FT                   ccggatcctctcttgagcccct, rev_name: HSVd-Rev288-271, rev_seq:
FT                   ctggatccgcggcagaggct"
FT                   /note="CV-IIa"
FT                   /db_xref="taxon:12893"
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SQ   Sequence 301 BP; 61 A; 86 C; 83 G; 71 T; 0 other;

jx259417 Length: 301  16-SEP-2012  Type: N  Check: 8615  ..

       1  ctggggaatt ctcgagttgc cgcatgggca agcaaagaaa aacaaggcag
      51  ggaggagact tacctgagaa aggagccccg gggcaactct tctcagaatc
     101  cagcgagagg cgtaggagag agggccgcgg tgctctggag tagaggcttc
     151  tagcttcgaa acaccatcga tcgtcccttc ttcttttacc ttctcctggc
     201  tcttcgagtg agacgcgacc ggtggcatca cctctcggtt cgtcttccaa
     251  cctgcttttt gtctatctga gcctctgccg cggatcctct cttgagcccc
     301  t