Sequence of DPV Citrus dwarfing viroid

Citrus dwarfing viroid isolate 11-1.10-CDVd, complete sequence.

ACC No: JX259426

Dated: 2012-09-16 | Length: 294 | CRC: -1207435560

                
ID   JX259426; SV 1; circular; genomic RNA; STD; VRL; 294 BP.
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AC   JX259426;
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DT   16-SEP-2012 (Rel. 114, Created)
DT   16-SEP-2012 (Rel. 114, Last updated, Version 1)
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DE   Citrus dwarfing viroid isolate 11-1.10-CDVd, complete sequence.
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KW   .
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OS   Citrus dwarfing viroid
OC   Viroids; Pospiviroidae; Apscaviroid.
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RN   [1]
RP   1-294
RA   Wang J., Boubourakas I.N., Voloudakis A.E., Agorastou T., Magripis G.,
RA   Rucker T., Kyriakopoulou P.E., Vidalakis G.;
RT   "The Enemy Behind the Gates. Citrus Viroids Threaten the Future of the
RT   Greek Citriculture";
RL   Unpublished.
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RN   [2]
RP   1-294
RA   Wang J., Boubourakas I.N., Voloudakis A.E., Agorastou T., Magripis G.,
RA   Rucker T., Kyriakopoulou P.E., Vidalakis G.;
RT   ;
RL   Submitted (25-JUN-2012) to the INSDC.
RL   Plant Pathology and Microbiology, University of California, Riverside, 900
RL   University Ave., Riverside, CA 92521, USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .294
FT                   /organism="Citrus dwarfing viroid"
FT                   /host="Citrus sinensis (Tarocco blood orange)"
FT                   /isolate="11-1.10-CDVd"
FT                   /mol_type="genomic RNA"
FT                   /country="Greece:Poros Arboricultural Station"
FT                   /PCR_primers="fwd_name: CDVd-For87-107, fwd_seq:
FT                   ctgtcgacgaaggcagctaagtt, rev_name: CDVd-Rev92-70, rev_seq:
FT                   cagtcgacgacgacaggtaagtttc"
FT                   /PCR_primers="fwd_name: CDVd-For264-287, fwd_seq:
FT                   ctccagggtaaaacacgattggtg, rev_name: CDVd-Rev270-253,
FT                   rev_seq: cctggaggcccaatyycc"
FT                   /note="CV-IIIb"
FT                   /db_xref="taxon:551523"
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SQ   Sequence 294 BP; 72 A; 74 C; 86 G; 62 T; 0 other;

jx259426 Length: 294  16-SEP-2012  Type: N  Check: 134  ..

       1  ggaggaaact ccgtgtggtt cctgtggggc acaccccctt gccgaaaata
      51  aaacgcagag agggaaaggg aaacttacct gtcgtcgtcg acgaaggcag
     101  ctaagttggt gacgccgagt ggagtaaaga cggagagtct ccgctagtcg
     151  gaaagactcc gcatcctccg gcagaccctt ctagctcccg ctagtcgagc
     201  ggacaactga gtgagttgtc ccaatcctaa tctgttttta tctaggctag
     251  aaggggattg ggcctccagg gtaaaacacg attggtgttt cccc