Sequence of DPV Citrus dwarfing viroid

Citrus dwarfing viroid isolate 12-1.11-CDVd, complete sequence.

ACC No: JX259427

Dated: 2012-09-16 | Length: 297 | CRC: -1609903926

                
ID   JX259427; SV 1; circular; genomic RNA; STD; VRL; 297 BP.
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AC   JX259427;
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DT   16-SEP-2012 (Rel. 114, Created)
DT   16-SEP-2012 (Rel. 114, Last updated, Version 1)
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DE   Citrus dwarfing viroid isolate 12-1.11-CDVd, complete sequence.
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KW   .
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OS   Citrus dwarfing viroid
OC   Viroids; Pospiviroidae; Apscaviroid.
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RN   [1]
RP   1-297
RA   Wang J., Boubourakas I.N., Voloudakis A.E., Agorastou T., Magripis G.,
RA   Rucker T., Kyriakopoulou P.E., Vidalakis G.;
RT   "The Enemy Behind the Gates. Citrus Viroids Threaten the Future of the
RT   Greek Citriculture";
RL   Unpublished.
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RN   [2]
RP   1-297
RA   Wang J., Boubourakas I.N., Voloudakis A.E., Agorastou T., Magripis G.,
RA   Rucker T., Kyriakopoulou P.E., Vidalakis G.;
RT   ;
RL   Submitted (25-JUN-2012) to the INSDC.
RL   Plant Pathology and Microbiology, University of California, Riverside, 900
RL   University Ave., Riverside, CA 92521, USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .297
FT                   /organism="Citrus dwarfing viroid"
FT                   /host="Citrus sinensis (Navelate-Nucelar navel orange)"
FT                   /isolate="12-1.11-CDVd"
FT                   /mol_type="genomic RNA"
FT                   /country="Greece:Poros Arboricultural Station"
FT                   /PCR_primers="fwd_name: CDVd-For87-107, fwd_seq:
FT                   ctgtcgacgaaggcagctaagtt, rev_name: CDVd-Rev92-70, rev_seq:
FT                   cagtcgacgacgacaggtaagtttc"
FT                   /PCR_primers="fwd_name: CDVd-For264-287, fwd_seq:
FT                   ctccagggtaaaacacgattggtg, rev_name: CDVd-Rev270-253,
FT                   rev_seq: cctggaggcccaatyycc"
FT                   /note="CV-IIIa"
FT                   /db_xref="taxon:551523"
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SQ   Sequence 297 BP; 72 A; 76 C; 87 G; 62 T; 0 other;

jx259427 Length: 297  16-SEP-2012  Type: N  Check: 789  ..

       1  ggaggaaact ccgtgtggtt cctgtggggc acaccccctt gccgaaaata
      51  aaatgcagag aggggaaagg aaacttacct gtcgtcgtcg acgaaggcag
     101  ctaagttggt gaagccgagt ggagtaaaga cggagagtct ccgctagtcg
     151  gaaagactcc gcttcctccg gctgaccctc cttcagctcg ccgctagtcg
     201  agcggacaac tgagtgagta gccccaaccc taatctgttt ttatctaggc
     251  tagaagggga ttgggcctcc agggtaaaac acgattggtg tttcccc