Sequence of DPV Sida micrantha mosaic virus
Sida micrantha mosaic virus isolate SiMMV-Santaremensis[BR:GO:Luz780:03] segment DNA-A, complete sequence.
ACC No: JX415187
Dated: 2013-05-20 | Length: 2691 | CRC: 2091699014
ID JX415187; SV 1; circular; genomic DNA; STD; VRL; 2691 BP.
XX
AC JX415187;
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DT 20-MAY-2013 (Rel. 116, Created)
DT 20-MAY-2013 (Rel. 116, Last updated, Version 1)
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DE Sida micrantha mosaic virus isolate SiMMV-Santaremensis[BR:GO:Luz780:03]
DE segment DNA-A, complete sequence.
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KW .
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OS Sida micrantha mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2691
RX PUBMED; 23489523.
RA Barreto S.S., Hallwass M., Aquino O.M., Inoue-Nagata A.K.;
RT "A study of weeds as potential inoculum sources for a tomato-infecting
RT begomovirus in central Brazil";
RL Phytopathology 103(5):436-444(2013).
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RN [2]
RP 1-2691
RA Barreto S.S., Hallwass M., Aquino O.M., Inoue-Nagata A.K.;
RT ;
RL Submitted (23-JUL-2012) to the INSDC.
RL Virology, Embrapa Vegetables, Km 09, BR060, Brasilia, DF 70359-970, Brazil
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FH Key Location/Qualifiers
FH
FT source 1. .2691
FT /organism="Sida micrantha mosaic virus"
FT /segment="DNA-A"
FT /host="Sida sp. voucher CNPH:Begomo:780"
FT /strain="Santaremensis"
FT /isolate="SiMMV-Santaremensis[BR:GO:Luz780:03]"
FT /mol_type="genomic DNA"
FT /country="Brazil:Goias, Luziania"
FT /collected_by="Alice K. Inoue-Nagata"
FT /collection_date="2003"
FT /clone="780"
FT /db_xref="taxon:228897"
FT CDS 271. .1026
FT /codon_start=1
FT /product="CP"
FT /note="V1"
FT /protein_id="AGL72223.1"
FT /translation="MPKRDPSWRQMAGTSKVSRSTNFSPRGGGGPKYNKASEWVHRPMY
FT RKPRIYRMIRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF
FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT KNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSITN"
FT CDS complement(1023. .1421)
FT /codon_start=1
FT /product="REn"
FT /note="C3"
FT /protein_id="AGL72224.1"
FT /translation="MDSRTGELITAHQAENGVYIWEIPNPLYFKTYKVEDLLYTRTRVY
FT HIQIRFNHNLRRVLGLHKAYLNFQVWTTSLTASGTTYLIRLRRLVMMYLDQLGVITLNN
FT VIRAVRFATDKAYVNYVLEDHDIKFKFY"
FT CDS complement(1168. .1557)
FT /codon_start=1
FT /product="Trap"
FT /note="C2"
FT /protein_id="AGL72225.1"
FT /translation="MLNSSSSTPPSIKPRHRIAKKRAIRRRRVDLECGCTIYQHLNCTG
FT HGFTHRGTHHCTSGREWRIYLGDTKSPVFQDVQGRGLAVHKDASVPHPDTVQPQPQESI
FT GSPQGLPELPSLDDFSDSFWNDLFD"
FT CDS complement(1478. .2557)
FT /codon_start=1
FT /product="Rep"
FT /note="C1"
FT /protein_id="AGL72226.1"
FT /translation="MPSAPKRFQIKAKNYFLTYPNCSLSKEEALSQLKTLNTPTNKKFI
FT KVCRELHENGEPHLHVLLQFEGNYCCQNQRFFDLVSPTRSTHFHPNIQRAKSSSDVKSY
FT VDKDGDTIEWGEFQIDGRSARGGCQTANDAAAEALNAPSKEIALQIIREKLPEKFLFQF
FT HNLNSNLDRIFARAPEPWTPPFRLSSFTNVPDEMQEWADDYFGRGSAARPLRPISLIVE
FT GGSRTGKTMWARALGPHNYFSGHLDFNSKVYSDQVEYNVIDDVAPHYLKLKHWKELIGA
FT QQKWQTNCKYGKPRLIEGGVPSIVLCNPGEGASYKDFLDKEENAALRGWTLHNAKFIFL
FT DAPLYQTETQDCQEESHQA"
FT CDS complement(2140. .2403)
FT /codon_start=1
FT /product="C4"
FT /protein_id="AGL72227.1"
FT /translation="MKMGSLISTCFFNSRATTAAKINDSSTWSPQQGQHISIRTFRELS
FT HRPTSSPMSTRTEIRSSGGNSKSTAEVLEAVARQLTTLPQKP"
XX
SQ Sequence 2691 BP; 656 A; 636 C; 649 G; 750 T; 0 other;
jx415187 Length: 2691 20-MAY-2013 Type: N Check: 1684 ..
1 accggatggc cgcgcgattt tgcccccccc ccacgtggcg ctctggtggt
51 cgtgcgatct ctctcccccc cactcgcgcg acgtggaact ctggtgtccg
101 cgcgttctcc ccccgcgcgc tctgccttta atttaaatta aaggaaataa
151 ctttcatcag gaccaatgaa attgcgtctt ttaagcctag atatttgcga
201 aagacttggg ccctaagttg tttgacggct atataattaa gtcatgtgtg
251 acgtcaggaa ttgtttcgaa atgcccaagc gggatccctc atggcgccag
301 atggcgggaa cctcaaaggt tagccgctct accaactttt cccctcgtgg
351 aggaggaggc ccaaagtaca acaaggcctc tgaatgggtt cacaggccca
401 tgtataggaa gcccaggata tacaggatga taaggactcc tgatgttcca
451 agaggctgtg aagggccctg taaggtccag tcctacgagc agcgtcacga
501 catctcacat gtcggcaagg tcatgtgcat atctgacgtc acacgtggca
551 acggtataac ccaccgtgtc ggtaagcgtt tctgcgttaa gtctgtgtac
601 attttaggga agatatggat ggacgagaac atcaagctca agaatcacac
651 gaacagtgtc atgttctggt tggtcagaga ccgtagaccg tatggtactc
701 ctatggactt tggccaggtg ttcaacatgt ttgacaacga gcccagcact
751 gctacggtga agaacgatct ccgtgatcgt tatcaagtta tgcacaagtt
801 ctacgccaaa gtcactggtg gtcaatatgc cagcaatgaa caggctctgg
851 tcaagaggtt ctggaaggtc aacaatcatg tggtgtacaa ccaccaggaa
901 gctggcaagt atgagaatca cacggagaat gctttgttac tgtatatggc
951 atgtactcat gcctctaacc ctgtgtatgc aacgcttaag attcggatct
1001 acttctacga ttcgataacc aattaataaa atttgaattt tatatcatga
1051 tcttcaagta catagtttac ataggctttg tcagtggcaa agcgaacagc
1101 tctaattaca ttgttaagcg tgattacgcc taattgatct aagtacatca
1151 ttacaaggcg tctaagccta atcaaataag tcgttccaga agctgtcaga
1201 gaagtcgtcc agacttggaa gttcaggtag gccttgtgga gacccaatac
1251 tctcctgagg ttgtggttga accgtatctg gatgtggtac actcgcgtcc
1301 ttgtgtacag caagtcctct accttgtacg tcttgaaata caggggattt
1351 ggtatctccc agatatatac gccattctct gcctgatgtg cagtgatgag
1401 ttccccggtg cgtgaatcca tgtcccgtgc agttgaggtg ttggtatatg
1451 gtgcagccgc actcaaggtc cactcgtcta cgcctgatgg ctctcttctt
1501 ggcaatcctg tgtctcggtt tgatagaggg gggcgtcgag gaagatgaat
1551 ttagcattgt ggagtgtcca gcctctcaat gccgcatttt cctctttgtc
1601 taggaagtct ttatagctgg ccccctcccc aggattgcac agcacgattg
1651 aagggacccc accttcaatc aaacgaggct ttccgtactt gcagtttgtc
1701 tgccatttct gttgggcccc tattagctct ttccagtgtt tcaactttag
1751 gtaatgcgga gcgacgtcat caatgacgtt atactccact tgatcagaat
1801 atacctttga gttgaaatcc agatggccac tgaagtaatt atgtgggcct
1851 aatgctctag cccacatcgt cttgcccgtt ctgctaccgc cttcaacaat
1901 taaacttatg ggcctcaatg gccgcgcagc ggaacccctc ccaaaataat
1951 catcggccca ctcttgcatc tcgtctggca cgttagtgaa tgaggagagt
2001 cgaaacggag gggtccacgg ctccggagcc cttgcaaaaa tcctatctaa
2051 attactattt agattgtgaa actgaaataa gaacttttcc ggcagcttct
2101 cccggattat ctgcaaggcg atttccttgg aaggtgcgtt taaggcttct
2151 gcggcagcgt cgttagctgt ctggcaaccg cctctagcac ttctgccgtc
2201 gatttggaat tccccccact cgatcgtatc tccgtccttg tcgacatagg
2251 acttgacgtc ggacgatgac ttagctctct gaatgttcgg atggaaatgt
2301 gttgaccttg ttggggagac caggtcgaag aatcgttgat tttggcagca
2351 gtagttgccc tcgaattgaa gaagcacgtg gagatgaggc tccccatttt
2401 catggagctc tctgcaaacc ttgatgaact tcttatttgt aggagtgttt
2451 agggttttta attgggaaag tgcttcttct ttcgataatg agcaattggg
2501 atatgtgagg aaataatttt tggcttttat ttgaaagcgc tttggagctg
2551 atggcatatt tgtaaatatg acccttacta ccaattggta gctgctctaa
2601 aactcatatg aatcggtagt tatggtagct cttatatact acaacttctt
2651 aagggcctaa agggcctaaa gcggccatcc gcactaatat t