Sequence of DPV Tomato severe rugose virus
Tomato severe rugose virus isolate ToSRV-[BR:GO:Goi1646:03] segment DNA-A, complete sequence.
ACC No: JX415188
Dated: 2013-05-20 | Length: 2591 | CRC: 39268999
ID JX415188; SV 1; circular; genomic DNA; STD; VRL; 2591 BP.
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AC JX415188;
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DT 20-MAY-2013 (Rel. 116, Created)
DT 20-MAY-2013 (Rel. 116, Last updated, Version 1)
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DE Tomato severe rugose virus isolate ToSRV-[BR:GO:Goi1646:03] segment DNA-A,
DE complete sequence.
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KW .
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OS Tomato severe rugose virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2591
RX PUBMED; 23489523.
RA Barreto S.S., Hallwass M., Aquino O.M., Inoue-Nagata A.K.;
RT "A study of weeds as potential inoculum sources for a tomato-infecting
RT begomovirus in central Brazil";
RL Phytopathology 103(5):436-444(2013).
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RN [2]
RP 1-2591
RA Barreto S.S., Hallwass M., Aquino O.M., Inoue-Nagata A.K.;
RT ;
RL Submitted (23-JUL-2012) to the INSDC.
RL Virology, Embrapa Vegetables, Km 09, BR060, Brasilia, DF 70359-970, Brazil
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FH Key Location/Qualifiers
FH
FT source 1. .2591
FT /organism="Tomato severe rugose virus"
FT /segment="DNA-A"
FT /host="Nicandra physaloides voucher CNPH:Begomo:1646"
FT /isolate="ToSRV-[BR:GO:Goi1646:03]"
FT /mol_type="genomic DNA"
FT /country="Brazil:Goias, Goianapolis"
FT /collected_by="Alice K. Inoue-Nagata"
FT /collection_date="2003"
FT /clone="1646"
FT /db_xref="taxon:158463"
FT CDS 171. .926
FT /codon_start=1
FT /product="CP"
FT /note="V1"
FT /protein_id="AGL72228.1"
FT /translation="MPKRDAPWRLTAGTSKVSRSVNYSPRAGYGPKYNKAAEWVNRPMY
FT RKPRIYRTLRGPDVPRGCEGPCKVQSYESRHDVSHVGKVICVSDVTRGNDITHRVGKRF
FT CVKSVYILGKVWMDESIKLKNHTNSVMFWLVRDRRPYSTPMDFGQVFNMFDNEPSTATV
FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNNVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSITN"
FT CDS complement(923. .1321)
FT /codon_start=1
FT /product="REn"
FT /note="C3"
FT /protein_id="AGL72229.1"
FT /translation="MDSRTGELITARQAENGVYIWEISNPLYFKINRVEDPMYTASRVY
FT HVQIRFNHNLRRALHLHKSFLNFQIWTTSLTASGTTYLTRFKYLVLLYLDRLGVISINN
FT VIRAVRFATDKSYVNAVLENHSIKFKYY"
FT CDS complement(1068. .1457)
FT /codon_start=1
FT /product="Trap"
FT /note="C2"
FT /protein_id="AGL72230.1"
FT /translation="MRNSSSLTPPSIKVQHRAAKKRGIRRRRIDIECGCSIYVHIDCRG
FT HGFTHRGTHHCTSGREWRLYLGDIKSPLFQDKQSGGSNVHREQSLPRPNTVQPQPEESI
FT ASPQELPQLPDMDDFTDSFWDDIFN"
FT CDS complement(1399. .2457)
FT /codon_start=1
FT /product="Rep"
FT /note="C1"
FT /protein_id="AGL72231.1"
FT /translation="MPSAPKRFQIKAKNYFLTYPKCSLSKEEALSQLKTLNTPTNKKFI
FT KVCRELHENGEPHLHVLLQFEGNYCCQNQRFFDLVSPTRSTHFHPNIQRAKSSSDVKSY
FT VDKDGDTIEWGEFQIDGRSARGGCQTANDAAAEALNAPSKDVALQIIREKLPEKFLFQF
FT HNLNSNLDRIFTRAPEPWAPTFPLSSFTSVPREMQAWADDYFGRGAAARPERPISIIIE
FT GDSRTGKTMWARALGAHNYLSGHLDFNPRVYSNNVEYNVIDDIAPHYLKLKHWKELLGA
FT QKDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLDKEENASLNNWTKHNAKFVFL
FT NTPLYQGTTQSC"
FT CDS complement(2040. .2303)
FT /codon_start=1
FT /product="C4"
FT /protein_id="AGL72232.1"
FT /translation="MKMGSLISTCFFNLRATTAAKINDSSTWSPQQDQHISIRTFRELS
FT HRPTSNPMSTRTEILSSGGNSKSTEEVLEAVARQLTTLPQKP"
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SQ Sequence 2591 BP; 661 A; 528 C; 599 G; 803 T; 0 other;
jx415188 Length: 2591 20-MAY-2013 Type: N Check: 4422 ..
1 accggatggc cgcgcgattt ttcacccctt tattttcaat taaagtaaag
51 tgattgtctg tggcccaatc atattgggcc tgtcgagctt agatatttgt
101 aacaacttaa ggcccaagtt gttaaacggc tataaattga acatacactt
151 tacttttgct ttaattcaaa atgcctaagc gtgatgcccc atggcgttta
201 acggcgggaa cttcaaaggt ttcccgctct gtcaattatt ctccccgtgc
251 aggatatgga cccaaatata acaaggccgc tgagtgggtg aacaggccca
301 tgtacaggaa gcccaggatc taccgtactt tgagaggccc agatgttcct
351 agaggctgtg aagggccttg taaggttcag tcttacgagt ctcgtcatga
401 tgtttcccat gtcgggaagg tgatttgtgt gtctgacgtt acacgtggta
451 acgatattac tcaccgtgtt ggtaagcgtt tctgcgtgaa gtctgtatat
501 attttaggga aggtatggat ggacgagagc atcaagttga agaatcacac
551 aaatagtgtg atgttctggt tggttagaga tcggagacct tattcgacac
601 ctatggattt tggccaggtg ttcaacatgt ttgacaacga gcctagcact
651 gcaactgtta agaacgatct tcgggatcgt tttcaggtca tgcacaagtt
701 ttatgccaag gttactggtg gacagtatgc cagtaatgag caggcattag
751 tgaagcgctt ttggaaggtc aacaacaacg tagtttacaa ccatcaggag
801 gcagggaaat acgagaatca tactgagaac gccttgctat tgtatatggc
851 atgtactcat gcctctaacc ccgtgtatgc tacattgaaa attcggatct
901 atttttatga ttcgattact aattaataat atttaaattt tattgaatga
951 ttttcgagta cagcatttac atatgatttg tctgttgcga aacgaacagc
1001 tctgattaca ttattaatgg aaataacgcc taatcgatct agatacaata
1051 agactaaata tttaaatcta gttaaatatg tcgtcccaga agctgtcagt
1101 gaagtcgtcc atatctggaa gttgaggaag ctcttgtgga gatgcaatgc
1151 tctcctcagg ttgtggttga accgtatttg gacgtggtag actctgctcg
1201 cggtgtacat tggatcctcc actctgttta tcttgaaata gaggggattt
1251 gatatctccc aaatataaac gccattctct gcctgacgtg cagtgatgag
1301 ttcccctgtg cgtgaatcca tgtcctctgc agtcgatgtg tacgtaaata
1351 gagcacccgc actctatatc aattcgtcgt ctcctgattc ctcgtttttt
1401 agcagctctg tgttgtacct tgatagaggg gggtgttaag gaagacgaat
1451 ttcgcattgt gctttgtcca attatttaga cttgcatttt cttctttgtc
1501 gaggaaacat ttatagctgg ccccctcgcc aggattgcaa agcacgatgc
1551 atgggatacc acctttaatt tgaactggct ttccgtattt gcagtttgat
1601 tgccaatcct tttgggcccc aagcaattct ttccagtgct ttaactttag
1651 atagtgcggt gcgatgtcat caatgacgtt atattcaaca ttatttgaat
1701 aaaccctagg attgaaatct aggtgtccac tcaaataatt atgggcccct
1751 aatgcacgtg cccacatcgt ctttcccgtt cgagaatcac cttcaatgat
1801 gatactaata ggtcgttccg gccgcgcagc ggcacctctc ccaaaatagt
1851 catctgccca agcttgcatc tctctcggta cgctagtgaa agaggagagg
1901 ggaaacgtag gggcccatgg ctccggagcc cttgtaaata tcctatctaa
1951 attactattt agattgtgaa actgaaataa gaacttttca ggcagcttct
2001 cacggattat ctgcaaggcg acgtctttgg aaggtgcgtt caaggcttct
2051 gcggcagcgt cgttagctgt ctggcaaccg cctctagcac ttcttccgtc
2101 gatttggaat tccccccact cgatagtatc tccgtccttg tcgacatagg
2151 atttgacgtc ggacgatgac ttagctctct gaatgttcgg atggaaatgt
2201 gttgatcttg ttggggagac caggtcgaag aatcgttgat tttggcagca
2251 gtagttgccc tcaaattgaa gaagcacgtg gagatgaggc tccccatttt
2301 catggagctc tctgcaaacc ttgatgaact tcttatttgt aggagtgttt
2351 agggttttta attgggaaag tgcttcttct ttcgataatg agcatttggg
2401 atatgtgagg aaataattct tcgcttttat ttgaaagcgc tttggagctg
2451 atggcatatt tgtaaatatg actcttgcta ccaattggta gcagctctaa
2501 aactcgtatg aattggtagt tatggtagct cttatatatt agaagttctt
2551 taaggagatt gctacacgtg gcggccatcc gttataatat t