Sequence of DPV Pepper vein yellows virus
Pepper vein yellows virus isolate pMA2 RNA-dependent RNA polymerase (RdRp) and coat protein (CP) genes, partial cds; and movement protein (MP) gene, complete cds.
ACC No: JX427535
Dated: 2013-06-04 | Length: 1382 | CRC: -1527151848
ID JX427535; SV 1; linear; genomic RNA; STD; VRL; 1382 BP.
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AC JX427535;
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DT 01-JAN-2013 (Rel. 115, Created)
DT 04-JUN-2013 (Rel. 117, Last updated, Version 2)
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DE Pepper vein yellows virus isolate pMA2 RNA-dependent RNA polymerase (RdRp)
DE and coat protein (CP) genes, partial cds; and movement protein (MP) gene,
DE complete cds.
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KW .
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OS Pepper vein yellows virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
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RN [1]
RP 1-1382
RX PUBMED; 23307365.
RA Knierim D., Tsai W.S., Kenyon L.;
RT "Analysis of sequences from field samples reveals the presence of the
RT recently described pepper vein yellows virus (genus Polerovirus) in six
RT additional countries";
RL Arch. Virol. 158(6):1337-1341(2013).
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RN [2]
RP 1-1382
RA Knierim D., Tsai W.S., Kenyon L.;
RT ;
RL Submitted (25-JUL-2012) to the INSDC.
RL Virology, AVRDC - The World Vegetable Center, PO Box 42, Shanhua, Tainan
RL 74199, Taiwan
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CC ##Assembly-Data-START##
CC Assembly Method :: ContigExpress v. Jul 31 2006
CC Coverage :: 3
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .1382
FT /organism="Pepper vein yellows virus"
FT /host="Capsicum annuum (bell pepper)"
FT /isolate="pMA2"
FT /mol_type="genomic RNA"
FT /country="Mali:Bamako"
FT /collection_date="14-Apr-2009"
FT /db_xref="taxon:909827"
FT gene <1. .576
FT /gene="RdRp"
FT /note="ORF2"
FT CDS <1. .576
FT /codon_start=1
FT /gene="RdRp"
FT /product="RNA-dependent RNA polymerase"
FT /db_xref="GOA:K9MDV1"
FT /db_xref="InterPro:IPR001795"
FT /db_xref="UniProtKB/TrEMBL:K9MDV1"
FT /protein_id="AFU85583.1"
FT /translation="SVAEWMLHDDMVVRNKLTLDLNSTTEKLRSAWLKCICNSVLCLSD
FT GTLLAQRVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDALESVNTNLEVYKS
FT LGFKVEVSGQLEFCSHIFRAPDLALPVNERKMLYKLIFGYNPGSGNLEVISNYIAACVS
FT VLNELRHDPDSVALLHKWLVSPVLPQNN"
FT gene 776. .>1382
FT /gene="CP"
FT /note="ORF3"
FT CDS 776. .>1382
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /db_xref="GOA:K9MDC0"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:K9MDC0"
FT /protein_id="AFU85584.1"
FT /translation="MNTGGVRRNNNGNGGSRNTRRRRRPRQVRPVVVVAPPGRARRGNR
FT RRRNGGRNRRSRNGVGGRSSNSETFIFNKDSIKDSSSGAVTFGPSLSESVALSGGVLKA
FT YHEYKITMVNIRFVSESSSTAEGSIAYELDPHCKLTSLQSTLRKFPVTKGGQATFRASQ
FT INGVEWHDTSEDQFRLLYKGNGTKNVAAGFFQIRFTVQL"
FT gene 807. .1277
FT /gene="MP"
FT /note="ORF4"
FT CDS 807. .1277
FT /codon_start=1
FT /gene="MP"
FT /product="movement protein"
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:K9MDW3"
FT /protein_id="AFU85585.1"
FT /translation="MEMVDHVTPAVADAHDRFALSLWSHPLGAHGAEIEDDEMEAGTEE
FT AEMELEEGRAIAKLSSSTRTQSRIVPQELSPSGRLYQRALRFQVEFSKPTMNIRSQWST
FT YASSVNPLPQRRAPSLTSWTPTASLLVSNPPCASSPSPKAGKRLFGLRRLTG"
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SQ Sequence 1382 BP; 368 A; 347 C; 343 G; 324 T; 0 other;
jx427535 Length: 1382 04-JUN-2013 Type: N Check: 8133 ..
1 agcgttgcgg aatggatgct acacgacgat atggtcgtcc gcaacaaact
51 cacactggac ttaaactcta caacggagaa gctacgatct gcgtggctaa
101 aatgcatctg caacagtgtc ctgtgtttga gcgatggtac tctcctcgcc
151 caaagggtcc ccggcgttca aaagtccggt agctacaata caagtagctc
201 aaattcaagg atccgagtta tggccgccta ccactgtgga gctgattggg
251 ctatggcgat gggagatgat gccctcgagt cagtcaacac caacctagag
301 gtgtataaaa gtctaggttt caaagtcgag gtttcaggac aactggaatt
351 ctgctctcac atctttagag cgcctgacct cgcccttccc gtgaatgagc
401 gcaaaatgct gtacaagctc atcttcggat ataatccggg aagtgggaat
451 ctggaggtta tctccaacta tattgccgcc tgtgtatcag ttctaaacga
501 attgcggcac gacccagatt ccgtagctct ccttcacaag tggctagtct
551 ctccagtgct gccacaaaat aattgaagag agagcatata actagccaag
601 catacatcag ttgcaagcgt tggaaagttt tagtctgatt accagcagcc
651 tgacacaata gattataagt ttttagcagg atttgcgttt ggatttttat
701 ccgcaatccc aatttctgta gcaggcatat acctagtcta ccttaagatc
751 tcagcccacg tccgtgcgat cgttaatgaa tacgggagga gttaggagaa
801 acaataatgg aaatggtgga tcacgtaaca cccgccgtcg cagacgccca
851 cgacaggttc gccctgtcgt tgtggtcgca ccccctgggc gcgcacggcg
901 cggaaatcga agacgacgaa atggaggcag gaaccgaaga agccgaaatg
951 gagttggagg aaggtcgagc aatagcgaaa ctttcatctt caacaaggac
1001 tcaatcaagg atagttcctc aggagctgtc accttcgggc cgtctctatc
1051 agagagcgtt gcgctttcag gtggagttct caaagcctac catgaatata
1101 agatcacaat ggtcaacata cgcttcgtca gtgaatcctc ttccacagcg
1151 gagggctcca tcgcttacga gctggacccc cactgcaagc ttactagtct
1201 ccaatccacc ctgcgcaagt tccccgtcac caaaggcggg caagcgactt
1251 ttcgggcttc gcagattaac ggggtagagt ggcatgatac atccgaagat
1301 caatttaggc tgctctacaa aggcaacggg acgaagaacg ttgccgctgg
1351 tttctttcag atccggttta ctgtgcaatt gc