Sequence of DPV Pepper vein yellows virus
Pepper vein yellows virus isolate pTH1 RNA-dependent RNA polymerase (RdRp) and coat protein (CP) genes, partial cds; and movement protein (MP) gene, complete cds.
ACC No: JX427539
Dated: 2013-06-04 | Length: 1381 | CRC: -884985622
ID JX427539; SV 1; linear; genomic RNA; STD; VRL; 1381 BP.
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AC JX427539;
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DT 01-JAN-2013 (Rel. 115, Created)
DT 04-JUN-2013 (Rel. 117, Last updated, Version 2)
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DE Pepper vein yellows virus isolate pTH1 RNA-dependent RNA polymerase (RdRp)
DE and coat protein (CP) genes, partial cds; and movement protein (MP) gene,
DE complete cds.
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KW .
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OS Pepper vein yellows virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
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RN [1]
RP 1-1381
RX PUBMED; 23307365.
RA Knierim D., Tsai W.S., Kenyon L.;
RT "Analysis of sequences from field samples reveals the presence of the
RT recently described pepper vein yellows virus (genus Polerovirus) in six
RT additional countries";
RL Arch. Virol. 158(6):1337-1341(2013).
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RN [2]
RP 1-1381
RA Knierim D., Tsai W.S., Kenyon L.;
RT ;
RL Submitted (25-JUL-2012) to the INSDC.
RL Virology, AVRDC - The World Vegetable Center, PO Box 42, Shanhua, Tainan
RL 74199, Taiwan
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CC ##Assembly-Data-START##
CC Assembly Method :: ContigExpress v. Jul 31 2006
CC Coverage :: 3
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .1381
FT /organism="Pepper vein yellows virus"
FT /host="Capsicum sp. (chilli)"
FT /isolate="pTH1"
FT /mol_type="genomic RNA"
FT /country="Thailand:Nakhon Pathom"
FT /collection_date="15-May-2009"
FT /db_xref="taxon:909827"
FT gene <1. .576
FT /gene="RdRp"
FT /note="ORF2"
FT CDS <1. .576
FT /codon_start=1
FT /gene="RdRp"
FT /product="RNA-dependent RNA polymerase"
FT /db_xref="GOA:K9MDW7"
FT /db_xref="InterPro:IPR001795"
FT /db_xref="UniProtKB/TrEMBL:K9MDW7"
FT /protein_id="AFU85595.1"
FT /translation="SVAEWMLHDDMVVRNKLTLDLNPTTEKLRSTWLKCICNSVLCLSD
FT GTLLAQRVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDALESVNTNLEVYKS
FT LGFKVEVSGQLEFCSHIFRAPDLALPVNERKMLYKLIFGYNPGSGNLEVISNYIAACVS
FT VLNELRHDPDSVALLHQWLVSPVLPQNN"
FT gene 775. .>1381
FT /gene="CP"
FT /note="ORF3"
FT CDS 775. .>1381
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /db_xref="GOA:K9MC69"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:K9MC69"
FT /protein_id="AFU85596.1"
FT /translation="MNTGGVRRNNNGNGGSRNTRRRRRPRQVRPVVVVAPPGRTRRGNR
FT RRRNGGRNRRSRNGVGGRSSNSETFVFNKDSIKDSSSGAVTFGPSLSESIALSGGVLKA
FT YHEYKITMVNIRFVSESSSTAEGSIAYELDPHCKLTSLQSTLRKFPVTKGGQATFRASQ
FT INGVEWHDTSEDQFRLLYKGNGTKNVAAGFFQIRFTVQL"
FT gene 806. .1276
FT /gene="MP"
FT /note="ORF4"
FT CDS 806. .1276
FT /codon_start=1
FT /gene="MP"
FT /product="movement protein"
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:K9MDV8"
FT /protein_id="AFU85597.1"
FT /translation="MEMVDHVTPAVVDAHDRFALSLWSHPLGAHGAEIEDDEMEAGTEE
FT AEMELEEGRATAKLSSSTRTQSRIVPQELSPSGRLYQRASRFQVEFSKPTMNIRSQWST
FT YASSVNPLPQRRAPSLTSWTPTASLLVSNPPCASSPSPKAGKRLFGLRRLTG"
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SQ Sequence 1381 BP; 369 A; 351 C; 343 G; 318 T; 0 other;
jx427539 Length: 1381 04-JUN-2013 Type: N Check: 9407 ..
1 agcgttgcgg aatggatgct acacgacgat atggtcgtcc gcaataaact
51 cacactggac ttaaatccta caacggagaa gctgcgatca acgtggctaa
101 aatgcatttg caacagcgtc ctgtgtttga gcgatggcac actcctcgcc
151 caaagggtcc ccggcgttca aaagtccggc agttacaaca caagtagctc
201 aaattcaagg atccgagtta tggccgccta ccactgtggg gctgactggg
251 ccatggcgat gggagatgat gccctcgagt cagtcaacac caacctagag
301 gtgtataaaa gtctaggttt caaagtcgag gtttcaggac aactggaatt
351 ctgctctcat atctttagag cgcctgacct cgcccttccc gtgaatgagc
401 gtaaaatgct gtacaagctc atcttcggat ataatccggg aagtgggaat
451 ctggaggtta tctccaatta tattgccgcc tgtgtgtcag ttttgaatga
501 gttgcggcat gacccagatt ccgttgctct ccttcaccag tggctagtct
551 ctccagtgct gccacaaaat aattgaagag agagcacata actagccaag
601 catacatcag ttgcaagcgt tggaagttca agtctgatta ccaacagcct
651 gacacaatag attataaatt tttagcagga ttcgcgtttg gatttttatc
701 cgcaatccca atttctgtag caggcatata cttagtctac cttaaaatct
751 cagcccacgt acgcgcgatc gttaatgaat acgggaggag ttaggagaaa
801 caataatgga aatggtggat cacgtaacac ccgccgtcgt agacgcccac
851 gacaggttcg ccctgtcgtt gtggtcgcac cccctgggcg cacacggcgc
901 ggaaatcgaa gacgacgaaa tggaggcagg aaccgaagaa gccgaaatgg
951 agttggagga aggtcgagca acagcgaaac tttcgtcttc aacaaggact
1001 caatcaagga tagttcctca ggagctgtca ccttcgggcc gtctctatca
1051 gagagcatcg cgctttcagg tggagttctc aaagcctacc atgaatataa
1101 gatcacaatg gtcaacatac gcttcgtcag tgaatcctct tccacagcgg
1151 agggctccat cgcttacgag ctggaccccc actgcaagct tactagtctc
1201 caatccaccc tgcgcaagtt ccccgtcacc aaaggcgggc aagcgacttt
1251 tcgggcttcg cagattaacg gggtagagtg gcacgataca tccgaagatc
1301 aatttaggct gctctacaaa ggcaacggga cgaagaacgt tgccgccggt
1351 ttctttcaga tccggtttac tgtgcaactg c