Sequence of DPV Tomato leaf deformation virus
Tomato leaf deformation virus isolate PA98-1-1 segment DNA-A, complete sequence.
ACC No: JX501502
Dated: 2013-05-12 | Length: 2589 | CRC: 1620743916
ID JX501502; SV 1; circular; genomic DNA; STD; VRL; 2589 BP.
XX
AC JX501502;
XX
DT 31-OCT-2012 (Rel. 114, Created)
DT 12-MAY-2013 (Rel. 116, Last updated, Version 3)
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DE Tomato leaf deformation virus isolate PA98-1-1 segment DNA-A, complete
DE sequence.
XX
KW .
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OS Tomato leaf deformation virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2589
RX PUBMED; 23468482.
RA Melgarejo T.A., Kon T., Rojas M.R., Paz-Carrasco L., Zerbini F.M.,
RA Gilbertson R.L.;
RT "Characterization of a new world monopartite begomovirus causing leaf curl
RT disease of tomato in ecuador and peru reveals a new direction in
RT geminivirus evolution";
RL J. Virol. 87(10):5397-5413(2013).
XX
RN [2]
RP 1-2589
RA Melgarejo T.A., Kon T., Rojas M.R., Paz-Carrasco L., Murilo-Zerbini F.,
RA Gilbertson R.L.;
RT ;
RL Submitted (18-AUG-2012) to the INSDC.
RL Plant Pathology, University of California, Davis, 222 2nd Street, Davis, CA
RL 95616, USA
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FH Key Location/Qualifiers
FH
FT source 1. .2589
FT /organism="Tomato leaf deformation virus"
FT /segment="DNA-A"
FT /host="tomato"
FT /isolate="PA98-1-1"
FT /mol_type="genomic DNA"
FT /country="Peru:Ica"
FT /collection_date="Dec-1998"
FT /db_xref="taxon:681518"
FT gene 174. .929
FT /gene="V1"
FT CDS 174. .929
FT /codon_start=1
FT /gene="V1"
FT /product="CP"
FT /db_xref="GOA:K4NZL0"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:K4NZL0"
FT /protein_id="AFV52550.1"
FT /translation="MPKRDAPWRLMAGTSKISRTSNYSPRGGMGPKFDKNAAWVNRPMY
FT RKPRVYRVLRGPDVPKGCEGPCKVQSFEQRHDISHIGKVMCISDVTRGNGITHRVGKRF
FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT KNDLRDRFQVMHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRSYFYDSITN"
FT gene complement(507. .824)
FT /gene="C5"
FT CDS complement(507. .824)
FT /codon_start=1
FT /gene="C5"
FT /product="C5"
FT /db_xref="InterPro:IPR006892"
FT /db_xref="UniProtKB/TrEMBL:K4NZL5"
FT /protein_id="AFV52555.1"
FT /translation="MVLVFPSFLMVVDHMVVDLPKAPHQSLLVTGILTPRDLSIEPMHN
FT LKTISKIVLHGGSTGLIVEHVEHLAKVHGSAIGSPVSDQPEHDTVSVVLQLDILVHPYF
FT T"
FT gene complement(926. .1324)
FT /gene="C3"
FT CDS complement(926. .1324)
FT /codon_start=1
FT /gene="C3"
FT /product="REn"
FT /db_xref="GOA:K4PD76"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:K4PD76"
FT /protein_id="AFV52553.1"
FT /translation="MDSRTGENITVHQAENSVFIWEVPNPLYFKIHDVEDILSTTTRVY
FT HIQIRFNHNLRKALQLHKAFLNFQVWTTSVQASGTTYLNRFRHLVLFYLDNLGVISINN
FT VIRSVRFATDKPYVNHVLQNHSIKIKLY"
FT gene complement(1071. .1460)
FT /gene="C2"
FT CDS complement(1071. .1460)
FT /codon_start=1
FT /gene="C2"
FT /product="TrAP"
FT /db_xref="GOA:K4NZZ9"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:K4NZZ9"
FT /protein_id="AFV52552.1"
FT /translation="MQNSSSSTPPSIKPRHKIAKAKPIRRKRIDLDCGCSFFLHINCVN
FT NGFTHRGEHHCASGREFRFYLGGTKSPLFQDTRRGGHTVHNDESIPHPNPVQPQPEEGA
FT STTQSLLELPSLDDISSSFWDDIFK"
FT gene complement(1411. .2457)
FT /gene="C1"
FT CDS complement(1411. .2457)
FT /codon_start=1
FT /gene="C1"
FT /product="Rep"
FT /db_xref="GOA:K4P282"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:K4P282"
FT /protein_id="AFV52551.1"
FT /translation="MPPPKAFKINAKNYFLTYPQCNLTKEEALSQLQNLETPTNKKYIK
FT IARELHEDGQHHLHVLLQFQGKFQCKNNRFFDLVSPTRSTHFHPNVQGAKSSTDVNAYV
FT DKDGDTLEWGEFQVDGRSARGGCQTANDAAAEALNSGSKEAALQIIREKLPEKYLFQFH
FT NLNCNLDKIFSKAPEPWSPPFPLSSFTNVPEEMQEWADDYFGRGAAARPERPISIIIEG
FT CSRTGKTMWARALGPHNYLSGHLDFNSKVYSNGADYNVIDDVSPQYLKMKHWKELIGAQ
FT KDWQSNCKYGKPIQIKGGIPSIVLCNPGEGQSYKDFLDKEENAALRAWTLHNAKFIFLN
FT SSLYQTEA"
FT gene complement(2043. .2300)
FT /gene="C4"
FT CDS complement(2043. .2300)
FT /codon_start=1
FT /gene="C4"
FT /product="C4"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:K4P248"
FT /protein_id="AFV52554.1"
FT /translation="MGNIISTCYSSSKANSNVRITDSSTWYPQPGQHISIRTFRELNPA
FT PTSTPTSTRTEIHSNGENSKSTAEVLEEAAKLLTTLPQKP"
XX
SQ Sequence 2589 BP; 664 A; 535 C; 600 G; 790 T; 0 other;
jx501502 Length: 2589 12-MAY-2013 Type: N Check: 8500 ..
1 accggatggc cgcacgattt tttacccccc tgttaatttt gggaccacac
51 acatacggac aaaacctttt gtccaatcat ggagcgtctg acgagcttaa
101 ttattaattc ctttagactg agtggtctat aaagacccag acaaactgta
151 ataattgata tctttaactc aaaatgccta agcgcgatgc cccatggcgc
201 ttaatggcgg ggacctcaaa gattagccgt acttccaatt attcacccag
251 aggaggtatg ggccctaagt tcgacaagaa tgcggcctgg gtaaacaggc
301 ccatgtacag gaagcccaga gtataccggg ttttaagagg cccagatgtt
351 cccaagggct gtgaggggcc ctgtaaggtc cagtcattcg agcagcgtca
401 cgatatctcc catattggca aggtcatgtg tatatccgat gttacccgtg
451 gtaacggtat tacccaccga gtgggtaagc gtttctgtgt gaagtccgtc
501 tatattttag gtaaaatatg gatggacgag aatatcaagt tgaagaacca
551 cactaacagt gtcatgttct ggttggtcag agaccggaga ccctatggca
601 ctcccatgga ctttggccag gtgttcaaca tgttcgacaa tgagcccagt
651 actgccaccg tgaagaacga tcttcgagat cgttttcagg ttatgcatag
701 gttctatgct aaggtcacgg ggggtcagta tgccagtaac gagcaggctc
751 tggtgaggcg cttttggaag gtcaacaacc atgtggtcta caaccatcag
801 gaagctggga aatacgagaa ccatacggag aacgccctat tattgtacat
851 ggcatgtact catgcctcta accctgtgta tgctacgttg aaaatacgta
901 gctattttta tgattctata acaaattaat aaagtttaat ttttattgaa
951 tgattctgaa gtacatgatt tacatatggt ttatctgttg caaaccgaac
1001 agatctaatt acattgttaa ttgaaataac tcctaaatta tctaagtaaa
1051 ataaaactaa atgtctaaat ctatttaaat atgtcgtccc agaagcttga
1101 actgatgtcg tccagacttg gaagttcaag aaggctttgt gtagttgaag
1151 cgccttcctc aggttgtggt tgaaccggat ttggatgtgg tatactctcg
1201 tcgttgtgga cagtatgtcc tccacgtcgt gtatcttgaa ataaagggga
1251 tttggtacct cccagataaa aacggaattc tctgcctgat gcacagtgat
1301 gttctccccg gtgcgtgaat ccattattaa cacagttaat atgcaggaag
1351 aatgagcagc cacagtctag gtctatgcgt ttccttctga tgggctttgc
1401 cttggcaatc ttatgcctcg gtttgataga gggaggagtt gaggaagatg
1451 aattttgcat tgtggagtgt ccacgctctt agagctgcat tttcctcttt
1501 gtcaaggaag tctttatagc tctgtccctc tcctggattg cagagcacga
1551 tagagggtat gccaccttta atttgaattg gctttccgta tttacagttt
1601 gattgccaat ccttctgggc ccctatcagc tctttccaat gtttcatctt
1651 taaatattgc ggactgacgt catcaatgac gttatagtcc gctccatttg
1701 aataaacttt ggaattaaaa tccaggtgtc cactcagata attatgtggg
1751 cctagtgcac gagcccacat agtcttccct gtccttgaac acccctctat
1801 tattatactg ataggtcttt ctggccgcgc agcggcaccc ctaccaaaat
1851 aatcatcagc ccattcttgc atctcctccg ggacgttagt gaaggaggag
1901 agtggaaacg gaggagacca tggctccgga gccttcgaaa aaattttatc
1951 taaattacaa tttaaattat gaaattgaaa taaatatttt tcagggagtt
2001 tctcccttat tatttggagg gctgcttctt tgctaccgct atttaaggct
2051 tctgcggcag cgtcgttagc agtttggcag cctcctctag cacttctgcc
2101 gtcgacttgg aattctcccc attcgagtgt atctccgtcc ttgtcgacgt
2151 aggcgttgac gtcggtgctg gatttagctc cctgaacgtt cggatggaaa
2201 tgtgttgacc tggttgggga taccaggtcg aagaatctgt tattcttaca
2251 ttggaatttg ccttggaact ggagtagcac gtggagatga tgttgcccat
2301 cttcgtgaag ctcccttgca attttgatat atttcttatt tgtgggtgtc
2351 tctaggtttt gcaattggga aagtgcttct tctttggtta aattgcactg
2401 gggatatgta agaaaataat tttttgcatt tatcttaaag gccttaggtg
2451 ggggcatttt ggtaataaat attttggaca ccgattggtt tggcttgtaa
2501 aacttattgc aatcggtgta ctggagtctt atttatagta ggagttccta
2551 aaggatttag caacacgtgg cggccatccg tataatatt