Sequence of DPV Tomato leaf deformation virus
Tomato leaf deformation virus isolate PA10-S9 segment DNA-A, complete sequence.
ACC No: JX501506
Dated: 2013-05-12 | Length: 2591 | CRC: -1515033121
ID JX501506; SV 1; circular; genomic DNA; STD; VRL; 2591 BP.
XX
AC JX501506;
XX
DT 31-OCT-2012 (Rel. 114, Created)
DT 12-MAY-2013 (Rel. 116, Last updated, Version 3)
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DE Tomato leaf deformation virus isolate PA10-S9 segment DNA-A, complete
DE sequence.
XX
KW .
XX
OS Tomato leaf deformation virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2591
RX PUBMED; 23468482.
RA Melgarejo T.A., Kon T., Rojas M.R., Paz-Carrasco L., Zerbini F.M.,
RA Gilbertson R.L.;
RT "Characterization of a new world monopartite begomovirus causing leaf curl
RT disease of tomato in ecuador and peru reveals a new direction in
RT geminivirus evolution";
RL J. Virol. 87(10):5397-5413(2013).
XX
RN [2]
RP 1-2591
RA Melgarejo T.A., Kon T., Rojas M.R., Paz-Carrasco L., Murilo-Zerbini F.,
RA Gilbertson R.L.;
RT ;
RL Submitted (18-AUG-2012) to the INSDC.
RL Plant Pathology, University of California, Davis, 222 2nd Street, Davis, CA
RL 95616, USA
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FH Key Location/Qualifiers
FH
FT source 1. .2591
FT /organism="Tomato leaf deformation virus"
FT /segment="DNA-A"
FT /host="tomato"
FT /isolate="PA10-S9"
FT /mol_type="genomic DNA"
FT /country="Peru:Ica"
FT /collection_date="Jul-2010"
FT /db_xref="taxon:681518"
FT gene 176. .931
FT /gene="V1"
FT CDS 176. .931
FT /codon_start=1
FT /gene="V1"
FT /product="CP"
FT /db_xref="GOA:K4P263"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:K4P263"
FT /protein_id="AFV52574.1"
FT /translation="MPKRDAPWRLMAGTSKISRTSNYSPRGGMGPKFDKNAAWVNRPMY
FT RKPRIYRVLRGPDVPKGCEGPCKVQSFEQRHDISHIGKVMCISDVTRGNGITHRVGKRF
FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYSSPMDFGQVFNMFDNEPSTATV
FT KNDLRDRFQVMHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRSYFYDSITN"
FT gene complement(509. .826)
FT /gene="C5"
FT CDS complement(509. .826)
FT /codon_start=1
FT /gene="C5"
FT /product="C5"
FT /db_xref="InterPro:IPR006892"
FT /db_xref="UniProtKB/TrEMBL:K4P267"
FT /protein_id="AFV52579.1"
FT /translation="MVLVFPSFLMVVDHMVVDLPKPPHQSLLVTGILTSRDLSIEPMHN
FT LKTISKIVLHGGSTGLIVEHVKHLAKVHGRAIGSPVSDQPEHDAVSVVLQLDILVHPYF
FT T"
FT gene complement(928. .1326)
FT /gene="C3"
FT CDS complement(928. .1326)
FT /codon_start=1
FT /gene="C3"
FT /product="REn"
FT /db_xref="GOA:K4P019"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:K4P019"
FT /protein_id="AFV52577.1"
FT /translation="MDSRTGENITVHQAENSVFIWEVPNPLYFKIHNVEDIQSTTTRVY
FT HIQIRFNHNLRKALQLHKAFLNFQVWTTSVQASGTTYLNRFRHLVLFYLDNLGVISINN
FT VIRSVRFATDKPYVNHVLENHSIKINLY"
FT gene complement(1073. .1462)
FT /gene="C2"
FT CDS complement(1073. .1462)
FT /codon_start=1
FT /gene="C2"
FT /product="TrAP"
FT /db_xref="GOA:K4NZM8"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:K4NZM8"
FT /protein_id="AFV52576.1"
FT /translation="MQNSSSSTPPSIKPRHKIAKAKPIRRKRIDLDCGCSFFLHINCVN
FT NGFTHRGEHHCASGREFRFYLGSTKSPVFQDTQRGGHTVHNDESIPHPNTIQPQPEEGA
FT STTQSLLELPSLDDISSSFWDDIFK"
FT gene complement(1413. .2459)
FT /gene="C1"
FT CDS complement(1413. .2459)
FT /codon_start=1
FT /gene="C1"
FT /product="Rep"
FT /db_xref="GOA:K4NZN3"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:K4NZN3"
FT /protein_id="AFV52575.1"
FT /translation="MPLPKRFQISAKNYFLTYPHCSLTKEEALSQFQNLNTPINKKYIK
FT ICRELHENGEHHLHVLIQFEGKYNCKNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI
FT DKDGDTLEWGEFQIDGRSARGGCQTANDSYAKALNAGDLHAALAVLKEEQPKDYVLQHH
FT NLRANLEKIFSKAPEPWSPPFPLSSFTNVPEEMQEWADDYFGRGAAARPERPISIIIEG
FT CSRTGKTMWARALGPHNYLSGHLDFNSKVYSNGADYNVIDDVSPQYLKMKHWKELIGAQ
FT KDWQSNCKYGKPIQIKGGIPSIVLCNPGEGHSYKDFLEKEENAALRAWTLHNAKFIFLN
FT SSLYQTEA"
FT gene complement(2045. .2302)
FT /gene="C4"
FT CDS complement(2045. .2302)
FT /codon_start=1
FT /gene="C4"
FT /product="C4"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:K4P293"
FT /protein_id="AFV52578.1"
FT /translation="MGNIISTCLSSSKGNTTARINDSSTWYPLPGQHISIRTYRELNPA
FT PTSSPILTRTVTPLNGESSKSTAEVLEEAAKLLTTVTPKR"
XX
SQ Sequence 2591 BP; 664 A; 541 C; 599 G; 787 T; 0 other;
jx501506 Length: 2591 12-MAY-2013 Type: N Check: 4602 ..
1 accggatggc cgcgcgattt ttttaccccc cttgttaagt ttgggaccac
51 acatatacgg acaaaacctt ttgtccaatc atggagcgtc tgacgagctt
101 aattattaat tcctttagac tgagtggtct ataaagaccc cgacaatctg
151 taataattga tatctttaac tcaaaatgcc taagcgggat gccccatggc
201 gcttaatggc ggggacctct aaaattagtc gtacatccaa ttattcaccc
251 agaggaggta tgggccctaa attcgacaag aatgcggcct gggttaacag
301 gcccatgtac aggaagccca gaatataccg ggttttaaga ggcccagatg
351 ttcccaaggg ctgtgagggg ccctgtaagg tccagtcttt cgagcagcgt
401 cacgatatct cccatattgg caaggtcatg tgtatatcag atgtcacccg
451 tggtaacggt attacccatc gagtcggtaa gcgtttctgt gtgaagtccg
501 tctatatttt aggtaaaata tggatggacg agaatatcaa gttgaagaac
551 cacactaaca gcgtcatgtt ctggttggtc agagaccgga gaccctatag
601 ctctcccatg gactttggcc aggtgtttaa catgttcgac aatgagccca
651 gtactgccac cgtgaagaac gatcttcgag atcgttttca ggttatgcat
701 aggttctatg ctaaggtcac gggaggtcag tatgccagta acgagcaggc
751 tctggtgagg cggttttgga aggtcaacaa ccatgtggtc tacaaccatc
801 aggaagctgg gaaatacgag aaccatacgg agaacgccct attattgtac
851 atggcatgta ctcatgcctc taaccctgtg tatgctacgt tgaaaatacg
901 tagctatttt tatgactcaa taacaaatta ataaagatta atttttattg
951 aatgattctc aagtacatga tttacatatg gtttatctgt tgcaaatcga
1001 acagatctaa ttacattgtt aattgaaata actcctaaat tatctaagta
1051 aaataaaact aaatgtctaa atctatttaa atatgtcgtc ccagaagctt
1101 gaactgatgt cgtccagact tggaagttca agaaggcttt gtgtagttga
1151 agcgccttcc tcaggttgtg gttgaatcgt atttggatgt ggtatactct
1201 cgtcgttgtg gactgtatgt cctccacgtt gtgtatcttg aaatacaggg
1251 gatttggtac ttcccagata aaaacggaat tctctgcctg atgcacagtg
1301 atgttctccc cggtgcgtga atccattatt aacacagtta atgtgcagga
1351 agaatgagca gccacagtct aggtctatgc gtttccttct gatgggcttt
1401 gccttggcaa tcttatgcct cggtttgata gagggaggag ttgaggaaga
1451 tgaattttgc attgtggagt gtccacgctc ttaaagctgc attctcctct
1501 ttctcaagga agtctttata gctgtgtccc tctcctggat tgcagagcac
1551 gatagagggt atgccacctt taatttgaat tggctttccg tatttacagt
1601 ttgattgcca atccttctgg gcccctatca gctctttcca atgtttcatc
1651 tttaaatatt gcggactgac gtcatcaatg acgttatagt ccgctccatt
1701 tgaataaact ttggaattaa aatccaggtg tccactcaga taattatgtg
1751 ggcctagtgc acgagcccac atagtcttcc ctgtccttga acatccctct
1801 attattatac tgataggtct ttccggccgc gcagcggcac ccctaccaaa
1851 ataatcatca gcccattctt gcatctcctc cgggacgtta gtgaaggagg
1901 agagtggaaa cggaggagac catggctccg gagcctttga gaaaatcttc
1951 tctaggttcg ctcttagatt atggtgctgc aacacataat ccttgggttg
2001 ttcttccttt aagacggcaa gtgctgcatg taaatcgcca gcgtttaacg
2051 ctttggcgta actgtcgtta gcagtttggc agcctcctct agcacttctg
2101 ccgtcgattt ggaactctcc ccattcaagg gtgtcaccgt ccttgtcaat
2151 ataggacttg acgtcggagc tggatttagc tccctgtatg ttcggatgga
2201 aatgtgctga cctggtaggg gataccaggt cgaagaatcg ttgattcttg
2251 cagttgtatt tcccttcgaa ctggataagc acgtggagat gatgttcccc
2301 attttcgtgc agttctctgc aaattttgat gtatttcttg ttaattgggg
2351 tgtttaggtt ttggaattgg gaaagtgctt cttcctttgt taacgagcag
2401 tgaggatatg taaggaaata atttttggca gatatttgaa agcgtttagg
2451 caggggcatt ttggtaattg ttggattggt taccaattga ggtctctcaa
2501 aaactctata tgaattggta gaacggtaac caatttatac tagaatcctc
2551 tttgctaaaa tctccacgtg gcggccatcc gttataatat t