Sequence of DPV Papaya mosaic virus
Papaya mosaic virus isolate PMV-HN, complete genome.
ACC No: JX524226
Dated: 2012-10-28 | Length: 6656 | CRC: 1233883287
ID JX524226; SV 1; linear; genomic RNA; STD; VRL; 6656 BP.
XX
AC JX524226;
XX
DT 28-OCT-2012 (Rel. 114, Created)
DT 28-OCT-2012 (Rel. 114, Last updated, Version 1)
XX
DE Papaya mosaic virus isolate PMV-HN, complete genome.
XX
KW .
XX
OS Papaya mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC Alphaflexiviridae; Potexvirus.
XX
RN [1]
RP 1-6656
RA Chen W.Y.;
RT "Amplification of Full-length cDNA of Papaya mosaic virus of Hainan";
RL Unpublished.
XX
RN [2]
RP 1-6656
RA Chen W.Y.;
RT ;
RL Submitted (24-AUG-2012) to the INSDC.
RL Chinese Academy of Tropical Agricultural Sciences, Institute of Tropical
RL Bioscience and Biotechnology, 4 Xueyuan Road, Haikou, Hainan 571101, China
XX
CC ##Assembly-Data-START##
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1. .6656
FT /organism="Papaya mosaic virus"
FT /host="Carica papaya"
FT /isolate="PMV-HN"
FT /mol_type="genomic RNA"
FT /country="China"
FT /isolation_source="plant leaves"
FT /collection_date="01-Jan-2007"
FT /db_xref="taxon:12181"
FT CDS 100. .4743
FT /codon_start=1
FT /product="replicase"
FT /note="ORF1(176K)"
FT /protein_id="AFV46461.1"
FT /translation="MANLRSVFEQLNDVSLRAVIQEEAYRDIKLTIKETKTYNPYAHPV
FT AVADSLEKLGIETNPFAVKAHTHAAAKTIELDMYKIVSFYLPKENPTTFMFMKRSKLQY
FT FRRGPQQKDVFLNAHIEPKDVARYDVDTLFDKNVTPQITTNTAFMGDTLHFLPLTAIER
FT IFKSSPKLQTLYATMVLPPEALHRLHSLHPGIYELEFHQEHFIYKPGGHAGAAYIHKYE
FT QLEWIKVGRFKWADEKGLTHMVTSQILETKGANHLFIFQRGRFLTPELRCFSTETKYVT
FT MPPIFLPKQFNARLPIKKTTAQQLFLYVKSVKNVTERDIWAKMRQLLKTSELQDYNPRE
FT VTLLVNYFLLIARLRSETCFDNVLSGGMFKKLFKPFIAWWEIQKHKIFGNEEFEQLMEA
FT LEWVDVTLTYPTKTFDNRGWVVKLEARRGYEWFADEMHKPKGPELNLEEKKTDPDAASY
FT EKYLKALSLLQKEPEVMEAKEAEATDEPQRPEVKEEQAEASTSGRAEEIQEDPATKKGK
FT EEPNPNRDLLCPCGLHLKIKNAEFPELPVLDHPDHLTGRKAWFFSKDGKPYSYTGGSHA
FT SRGWPNWLEKILAAIEIKEPLPEFNQCLVQQFKLQAAIPFHRDDEPCYPKGHQVLTINH
FT SGECLTQIACQKGKASITMGFGDYYLSPVGFQESHKHAVSNTTGGRVSLTFRCTVQQNK
FT FNDDGSMEALDNLPWKAWIPKLQNLGFQGRQLQYDPNGALISPIEEIRSMPKCKPEGVP
FT EVVYKTLDGLARAPTPYSPNPIRARAYTSDVKNCRIGALLRQQGKEWGCRFDALVEAGK
FT RELAISVIHGAGGSGKSQALQTLIKDNPELDITVVLPTNELRLDWLRKLPKAPQEKFKT
FT FEKALLAPPTPIVIFDDYGKLPAGYVEAFCLYFSTVQLIILTGDCKQSVHHESNENATT
FT SSIEPLVKEASELCRYYINATHRNKKDLANKLGVYSEKTGLTEVTHGTTPIPGLHMLVP
FT SLYKKQAFSEMGHKVSTYAGCQGITAPKIQILLTEETSLCSREVLYTALSRAVHSIHFV
FT NASPNNQAFWKKLECTPYLKAFLSTLREEVAQPIEEKKAEPTPVEPPRTHIAKEDAMVE
FT YENVIEKMPEKHEREIFSEKHGHSNCVQTEDPFIQMFSHQQAKDDTLLWATIEARLVIS
FT NPKANWQEYLEKRPVGEVLFESYKRAMHLPKMPIPFEEDLWNSSMHEVQKTYLSKPENM
FT IKNGMARQSPDYDPNVISLFLKSQWVKKMEKLGAIKIKPGQTIASFHQATVMLFGTMAR
FT YMRRMREVFQPAHIRINCEMTPEDLSSWAAGEGGHWKFKGPSLANDFTAFDQSQDGAML
FT QFEILKARHHSIPEDILDAYLTIKTNSKIFLGTLAIMRLTGEGPTFDANTECNIAFTHT
FT KFNIPEGTAQLYAGDDSAIDGLPALRPSFKMIEQKLTLRSKPQVALQQKGDWAEFCGFR
FT ITPKGLIKDPKKLHASWMLEKKKGNVKNVLRSYELDLALAYQHKDSLHELLSEEELKYH
FT YETVRSIVKSGGGGVLNTYISKDESLY"
FT CDS 4727. .5428
FT /codon_start=1
FT /product="triple gene block protein 1"
FT /note="ORF2(26K)"
FT /protein_id="AFV46462.1"
FT /translation="MNHFINLLVAEGFVRTNEPLTDQLVVHSVAGSGKSTLIRKFLEEQ
FT PLARAYTHCRADPPNLEGRFIQPFKGPCPDHFNILDEYCKEPISAKFQVLIADPLQYRT
FT QHLRPHYVNHKSHRLGPETCKLLSSLGIKVESHRRDRDVVTLSGIFGSPILGQAIALDR
FT SASDLLRAHGIQALCPIESIGQEYPVVTVVSSEPLRNVRFKDQVYIALSRHTEQLHVLS
FT PEFPHTTSRPQ"
FT CDS 5382. .5717
FT /codon_start=1
FT /product="triple gene block protein 2"
FT /note="ORF3(12K)"
FT /protein_id="AFV46463.1"
FT /translation="MSSHQNFLTPPPDHSKAILAVAVGVGLAIVLHFSLSYKLPSPGDN
FT IHSLPFGGTYRDGTKSIIYNSPHRGPGQSGALPIITVFAIIECTLHVLRKRDNPVRPQH
FT SDCPNCS"
FT CDS 5653. .5859
FT /codon_start=1
FT /product="triple gene block protein 3"
FT /note="ORF4(7K)"
FT /protein_id="AFV46464.1"
FT /translation="MFSGKEITLFALSTLIALIVLNYMSATPNPVCLIELTGHSAVLRG
FT NNCESLTSGVIEALSAHLHGLRN"
FT CDS 5889. .6536
FT /codon_start=1
FT /product="coat protein"
FT /note="CP"
FT /protein_id="AFV46465.1"
FT /translation="MSKSSMSTPNTAFPAITQEQMSSIKVDPTSNLLPSQEQLKSVSTL
FT MVAAKVPAASVTTVALELVNFCYDNGSSAYTTVTGPSSIPEISLAQLASIVKASGTSLR
FT KFCRYFAPIIWNLRTDKMAPANWEASGYKPSAKFAAFDFFDGVENPAAMQPPSGLIRSP
FT TQEERIANATNKQVHLFQAAAQDNNFASNSAFITKGQISGSTPTIQFLPPPE"
XX
SQ Sequence 6656 BP; 2007 A; 1677 C; 1513 G; 1459 T; 0 other;
jx524226 Length: 6656 28-OCT-2012 Type: N Check: 7330 ..
1 gaaaagaaac acaaagcaaa gcaaagcaaa gcaactcaaa taaaccatat
51 ttggccaagg cacttggtaa tcaaacgggc acaaccctag attaacgata
101 tggcaaattt gaggagtgtt ttcgaacagt tgaacgacgt ctcactccgg
151 gctgttattc aagaagaggc ctacagagac attaagctca ctattaagga
201 aactaaaacc tacaatcctt atgcacatcc agtagcagta gcggatagtt
251 tagaaaaatt aggaatagaa actaacccct ttgccgtcaa ggcgcatacg
301 catgccgcgg caaagacaat agaattagat atgtacaaaa tagtttcttt
351 ctacctccca aaggagaacc ccaccacctt tatgttcatg aagaggagca
401 agttgcaata ttttagaaga ggcccacagc aaaaagatgt gttcctcaat
451 gctcacatag aacccaaaga cgtggctagg tatgacgtgg acaccctttt
501 tgacaagaac gtgaccccac agattaccac aaacacagcc tttatggggg
551 ataccctcca ttttcttcca ctaacagcga ttgaaaggat ctttaaatcc
601 tcccccaaac ttcaaaccct ctacgccact atggtactcc caccggaggc
651 cctgcataga ctgcattctc tgcaccctgg tatatatgaa ttagaatttc
701 accaagaaca tttcatctac aaaccagggg gtcatgctgg ggcagcgtac
751 atccacaaat acgagcaact tgagtggatt aaagtgggaa ggtttaagtg
801 ggcggacgag aaggggctca cccacatggt gacctcacag attttggaaa
851 ctaaaggtgc caaccacctc ttcattttcc agagagggag gtttctgact
901 ccagaattga ggtgtttcag cactgagaca aaatatgtca ccatgcctcc
951 catcttcctc cccaagcagt ttaatgcccg gttgccaatt aagaaaacca
1001 ccgcccaaca attgtttctc tacgtaaaat cagtgaaaaa tgtaacagag
1051 agggacatct gggcaaagat gagacagttg ctcaagactt cggagctaca
1101 agattacaat ccaagagagg tgactctgct ggtgaactat tttctcttga
1151 ttgccagatt aaggtcggaa acgtgttttg acaacgtcct cagcggggga
1201 atgttcaaga aactcttcaa acccttcatc gcatggtggg agatccaaaa
1251 acacaaaatt ttcggaaatg aggagtttga acagttgatg gaagctctgg
1301 agtgggtgga tgtaacactg acctacccaa caaaaacttt tgacaatcgg
1351 ggttgggtgg ttaagctgga agcgaggagg ggttacgagt ggttcgctga
1401 tgagatgcac aagccgaagg gtccagaact aaacttggag gagaagaaaa
1451 cggacccgga cgccgcatcc tacgaaaaat acttgaaagc cctgagcctt
1501 ttacagaaag aaccggaggt catggaagcc aaagaagcag aggcaacaga
1551 tgaaccccaa aggcccgaag ttaaggaaga gcaggcagag gcttccacga
1601 gtgggagggc tgaagaaatt caagaggacc cggcaaccaa gaaagggaag
1651 gaggagccga accccaatcg ggacctgctc tgcccatgcg gactacatct
1701 aaagatcaaa aatgccgaat ttcctgaact tccggtactc gatcatccag
1751 atcatctcac cggaagaaaa gcatggttct tctcaaagga tggaaagcca
1801 tactcctaca caggaggctc acatgcatcc cgaggctggc caaattggct
1851 ggagaaaatt ttagccgcaa tagaaatcaa agagccactg ccggagttca
1901 accaatgctt agtccagcag tttaaactcc aagcggccat cccattccac
1951 cgagatgatg aaccgtgtta tccaaagggt caccaggttc tcaccatcaa
2001 ccactcaggg gaatgcctca cccaaatagc ttgccaaaaa ggaaaggcaa
2051 gtataactat gggattcggt gactactact tgagcccagt gggattccaa
2101 gagtcccaca agcatgcggt aagcaacacc acagggggaa gggtgtctct
2151 gactttcaga tgcacagtcc agcaaaataa atttaatgat gatggaagta
2201 tggaagccct tgataacctt ccttggaaag cgtggattcc gaaactgcaa
2251 aatttaggat tccaaggaag gcagcttcag tatgatccta atggagcact
2301 gatcagcccc attgaggaaa ttcgaagcat gcccaagtgc aagcctgaag
2351 gggttccaga agtagtttac aagacgctgg acggactagc ccgtgcgcca
2401 actccatatt ctccaaaccc tatccgagct agagcataca cctcagatgt
2451 caaaaactgt agaattgggg ccctgctaag gcaacaaggt aaggagtggg
2501 gatgcaggtt tgacgcattg gtagaagctg gcaagagaga gttggccatc
2551 tccgtaattc acggagcggg aggaagcggg aagtcacaag cattgcagac
2601 cctgattaag gacaacccag agcttgatat cacggtggtc ctcccaacca
2651 atgaactcag gctggattgg cttcggaagt taccaaaagc cccgcaggaa
2701 aagttcaaaa ccttcgaaaa ggcattgtta gctcccccca ccccaatagt
2751 catcttcgat gattatggca aactaccggc aggctacgtg gaagccttct
2801 gcttgtactt ctccactgta caactgatca tcctaaccgg agattgcaaa
2851 cagagtgtgc accatgaaag taatgagaat gccacaacaa gctcaataga
2901 acccctggtt aaagaagcct cagagctttg caggtattac atcaatgcca
2951 cacacagaaa taagaaagat ctggccaaca aactgggagt ttactcagag
3001 aaaaccgggt tgaccgaagt gacccacggc accaccccga tccctgggct
3051 tcacatgcta gtgccctcgc tttacaaaaa gcaagccttt tcagagatgg
3101 gacataaggt gtccacctac gcgggctgtc aggggatcac cgctccaaaa
3151 atccaaatct tgctaacaga ggaaacctct ctctgctcca gagaggtcct
3201 gtacactgca ctatcgaggg ccgtacattc aatccatttt gtaaacgcga
3251 gcccaaacaa tcaggctttt tggaaaaaac tggagtgcac tccatacctc
3301 aaggctttcc tgtcaacttt gagagaagaa gtggcacagc ctattgaaga
3351 gaagaaagct gaacccactc cagtagagcc cccacgaaca cacattgcaa
3401 aggaagatgc aatggtggaa tatgaaaacg tcatcgagaa aatgcctgaa
3451 aagcatgaaa gggaaatttt ctcagaaaaa cacgggcaca gcaactgtgt
3501 tcaaaccgaa gaccccttca ttcagatgtt ttctcaccaa caggcaaaag
3551 atgacaccct actttgggct accattgaag ccagattggt catctccaac
3601 ccaaaggcca attggcaaga gtaccttgaa aagaggccag tgggagaagt
3651 gctgtttgaa tcatacaagc gggccatgca cttgccaaag atgcccattc
3701 cctttgagga ggatctttgg aactctagca tgcatgaggt gcaaaagacc
3751 tacttgtcca agcctgaaaa catgatcaag aatggaatgg ccaggcagag
3801 ccccgactat gacccaaatg tgatctccct gttcctgaag tctcagtggg
3851 tgaagaaaat ggaaaaatta ggggcaataa agatcaaacc cggtcaaacc
3901 atagcctctt ttcatcaagc cactgtaatg ctctttggaa ctatggcaag
3951 atacatgagg agaatgcggg aagtcttcca acctgcccac atcaggatta
4001 actgtgagat gaccccggaa gacctgagct cttgggcggc tggagaaggg
4051 ggacactgga agtttaaagg cccttcactt gccaatgact tcacagcatt
4101 tgaccagtca caagatggtg ctatgctaca gtttgaaatt cttaaagcta
4151 ggcaccactc catcccagag gacattttgg acgcgtacct cacgataaaa
4201 actaactcaa agatattcct gggaacattg gcaataatga gattgaccgg
4251 tgaggggccc actttcgacg caaacactga atgcaatatc gccttcacac
4301 acactaaatt caacattcca gaaggcacag cacaattgta tgcaggggat
4351 gactcagcaa tcgatggttt gcctgcacta agaccaagtt ttaagatgat
4401 cgaacaaaag ctcaccttga ggtccaaacc ccaggtagcc cttcaacaaa
4451 aaggagactg ggcagagttc tgtggcttcc gaatcacccc aaaagggctg
4501 atcaaggacc ccaagaaact ccatgcctct tggatgctag aaaagaagaa
4551 ggggaatgtt aaaaacgtat tgagatcata cgagcttgat ttggcgttag
4601 cataccaaca caaggatagc ctgcacgaac tactttccga ggaggagctc
4651 aagtaccact acgagacggt tcgttccata gttaagtcag gaggaggtgg
4701 agttttgaat acttacatct ccaaggatga atcactttat taaccttctc
4751 gtagctgagg gatttgtcag gactaacgaa cccctcactg accaacttgt
4801 agtccattcg gtagccggaa gtggaaagtc aaccctcatt aggaaatttc
4851 tggaggagca accccttgca agagcataca cgcactgtag ggccgaccca
4901 cccaatcttg aggggaggtt cattcagccg ttcaagggac cgtgtccaga
4951 tcatttcaac atactggacg aatactgcaa ggagccaatc tcggccaagt
5001 tccaagtcct catagccgac ccgcttcaat acaggactca acatctgcga
5051 cctcactacg tcaatcataa atcccacagg ttgggacctg agacttgcaa
5101 actactgtcc agccttggaa tcaaggtcga aagtcataga agagaccgtg
5151 acgtggtgac cctgagtggt atcttcggtt caccaatcct aggccaggct
5201 attgcgctag acaggtctgc cagtgacctg ctaagagctc acggaatcca
5251 ggccctctgc cccatcgaat caattggcca ggaataccca gtggtgacag
5301 tagtttcttc ggagcccttg agaaacgtga ggttcaagga tcaagtgtac
5351 atagccctat ccagacacac tgaacagctc catgtcctct caccagaatt
5401 tcctcacacc acctcccgac cacagtaagg ctatcttagc tgtagcagta
5451 ggagtaggtt tagctatagt tctgcatttt tctctctctt ataagttgcc
5501 ctcaccaggt gataacattc acagtcttcc ttttggaggc acgtacaggg
5551 acggaactaa atccattatt tacaactctc cccacagagg accgggacag
5601 tcaggcgccc tgccaatcat tacggtgttt gccatcatcg agtgtaccct
5651 ccatgttctc aggaaaagag ataaccctgt tcgccctcag cactctgatt
5701 gccctaattg ttcttaacta catgtcagcg actcccaatc cggtgtgtct
5751 gattgaactc acaggacata gtgctgttct aagaggaaat aactgtgaaa
5801 gtttaacatc aggtgttata gaggccctat ccgcccacct acacgggctt
5851 aggaactagc ttcattcgaa attcaaaatt ctgttttaat gtctaagtca
5901 agtatgtcca cacccaatac agccttcccc gccatcaccc aggaacaaat
5951 gagctcgatt aaggtcgatc caacgtccaa tcttctgccc tcccaagagc
6001 agttaaagtc agtgtccacc ctcatggtag ctgctaaggt tccagcagcc
6051 agtgttacaa ctgtggcatt ggagttggtt aacttctgct atgacaatgg
6101 gtccagcgcg tacaccacag tgactggccc atcatcaata ccggagatat
6151 cactggcaca attggccagc attgtcaaag cttccggcac ttcccttaga
6201 aaattctgcc ggtacttcgc gccaataatc tggaatctga ggacggacaa
6251 aatggctcct gccaattggg aggcctcagg atacaagcca agcgccaaat
6301 ttgccgcgtt cgacttcttc gacggggtgg agaatccggc ggccatgcaa
6351 cccccttcgg gactaatcag gtcgccgacc caggaagagc ggattgccaa
6401 tgccaccaac aaacaggtgc atctcttcca agccgcggca caggacaaca
6451 actttgccag caactccgcc ttcatcacca aaggccaaat ttctgggtca
6501 acccccacca tccaattcct tccacccccc gaataaacac acttgaccca
6551 gcccgttgtt tagcactatt tgttggggct attgagtttt caaaatgtgc
6601 ttttgctata gtagacgaaa cttactacct agtttggttt tgcaaatttc
6651 ctttcc